RNA id: XM_026922920.2


Basic Information

Item Value
RNA id XM_026922920.2
length 8517
RNA type mRNA
GC content 0.46
exon number 52
gene id dock4b
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 18484440 ~ 18593405 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTCGCGCTCGTgtactctctcgctctcgcgcTCGCTCGGGCGCTCTGAACAATGAGTATGTGCGGCGCGCGAGGAGCCCGGAGAATGTGAGCGTGTGATTTGGCCCCAGTGTTCAGCGCTGTGCGATTCTCCTCGTGTGGGCTTTCAATGGGCGAAGAACCCTAACCATGTGGATACCGACGGAACACGAGAAATTCGGAGTGGTGCTGGCCAGTTTTCGGGGGACGGTACAGCACGGCTTGCCTCTGGAGATCGGTGACACGGTGCAGATCCTGGAGAAATGTGAAGGCTGGTACAGAGGCTTCGTGCTCAAGAACCCAAATGCCAAGGGGATTTTCCCATGCAGCTACATTCATTTGAAAAATGCTCAAATCAAGAACAAGGGGCAGTTCGAGACTGTGGTGCCCACGGAAGACACGGTCATTACAGAGATGACGTCCACATTGCGGGAATGGGGCACCATATGGAAGCAGCTTTATGTGAAGAATGAGGGAGATCTGTTCCACAGGTTGTGGCATGTGATGAATGAGATCTTGGATCTGCGGCGGCAGGTGCTGGTTGGCCATCTGACCCACGACCGCATGAAGGACGTCAAACAGCACATCACTGCACGCCTAGACTGGGGAAATGAGCAGCTGGGTCTGGACCTGGTCCCCAGGAGAGAGTTCAGCATGGTGGACCCTGATGACATCAGCGTCACTGAGCTGTACAGACTGATGGAACATCGGCACCGTAAAAAGGAAACGCCGGTCCCAGCCAGCACACATCACCTGTTTGTGCACATGAAGAGTCTGATGAGCTCGAACCTGGGCGAGGAGCTGGATGTTTTCTTCTACATCTATGACAGCAGAGAGAGTCGACCAATCAGTGAAAGGTTCTTTGTGAAGCTAAATAAGAACGGAGTGCCAAAGTCTCCAGAGaagacagagacacactgtACCCTTTTTGTGGACTTGGGGAGCAGCGACCTGAGAAAAGATGTGTATATTGTTGTTCACATCATTAGGATAGggaggaTGTGCGCCGGTGAGAAGAAGAGCACATGCAGCGTGCAATACAGGCGTCCCTTTGGCTGCGCTTTGGTCAGTATTGCAGATCTACTCACTACTGACACGAAAGATGACCACGTCCTTAAAGTCTATGGATGTAACACTGAGAGCGAATGGAGTCAAATCCATGACAACATCATAAAGAAAGTGAACTCCAGATATAACCAAATAGGATCCAATGCGGGCCTAGCAGTGAATCTACAGTTACTTCACGGGGACATTGAGCAGTTGCGGAGGGAGTACATGGCCATTTTCTCTCGGGGTGTGTCCATCACCAGGAAACTGGGCTTCTCTGATGTCATCATGCCAGGGGAGATGAGGAACGATCTGTACATTACCCTGGAGAAAGGAGAGTTTGAGAAGGGAGGGAAGACAGTAGCCAGAAATGTGGAGATCACCGTTTATGCACTGGATGTCGATGGACAGATTCTCAGGGGCTATGTTGCAGCGGGTTCAGGTGAACCGGGGGCTGATGAGTACCACTCCTTTGTGCTGTACCACAACAACAGCCCACGCTGGGTTGAGCAGATCAAGCTTCCCATCCCCGTTGACATGTTCCGTGGCTCCCATGTCCGCTTTGAGTTTCGCCACTGCTCCACAAAAGACAAGGGGGAGAAGAAGCTGTTTGGCTTCTCATTTGTCCCTTTAATGCAGGAAGATGGACGAACTCTGCCTGATGGCACCCATGAGCTTATCGTCCATAAGtgtgagGAGAACGCTAATCTTCAGGACTGTGCACGCTACCTCAATCAACCCTCCTTCAAAACCAACCTGTCAGGCAACAACCAAGCTGTGAAAAGCAGCAAGGAGTCCTTCTGGATCACCTCGTTCCTCTGTTCCACCAAACTCACTCAGAATGGTGATATGCTGGACTTGCTGAAATGGAGGGTGCACCCTGAGAGGATCAGTGACAGCTTGTCTAAACTGAAGGAGATTGATGGCTCTGAGATAGTTAAGTTCTTACAGGATACACTGGACACGCTCTTTGGAATCTTGGACGAGAGCTCGCAGAGATATGGTCTCAAAGTCTTTGATTCTCTTGTGCACATTATAAATTTACTCCAGGACAGCAAGTTCCAGCACTTTAAACCCGTCATGGACACCTACATCGAGAGCCACTTTGCAGGAGCTTTGTCATACAGGGATCTGATTAAGGTACTGAAATGGTACGTGGACCGCATCATTGAAGCCGAACACCAGGACCACATCCAGCGAGTACTCAGAGCGACGGAGTACATCTTTAAGTACATTATCCAATCTCGGAGGCTGTTTGCACTCGCCACGGGAGGCCAGAACGAGGAAGAGTTTCGCTGCTGTGTGCACGAACTCTTCATGTCCATCCGCTTCTTCTTGTCGCAGGAGAGCAAAGGGTCCAGccctatcacacacacacaggcGGTGTTTTTGCAGGCGTTTCCTGCAGTCTATGGGGAGCTACTGAAGCTGTTCACTGTCAGAGAGGTGGCCTCATTCGTGCGGGAGACGCTGGGGAGTCTGCCAGACACCTCACAGTCAGACTGCCCCCTAGAGACTGTCAAACTGCAGTGCATTTCCAAAACTGTGGAGAGCCAGCTGTATACAAatccagaatcAAGGTATATCCTGCTCCCTGTGGTCTTGCGCTTGTTACAATCTCACATGCAGGAGCAGCGGGATCTGGTGATGTGCGCCCAAATACTCACCACCATGCTGTCTATCATAAAGAGATACGATACGgagccAGCCATGTCTGAAGAAGTGGATCTGATGGTGGAAAGCTTGCTCAGTGTGTTATTGAGGACCATACTGGAGATTTCCAACCGTCCGCAGACCCCAGCGTCGACCCTGCGTCCACAGAATCAGGACGTGACGGGGGAGTTTGTGTCATGTCTCTTGGCTCTCCTGAAGCAGATGGGAGATCAACACTACCAGCAGCATCTTCAGCGTTTCACCAGTAAAGATGAGCTGAGGGATTTCCTCCTGCAGATTTTCACCGTGTTCCGGATCCTGATCCGGCCCGAGATGTTTCCGAAAGATTGGACAGTCATGCGGCTCGTCACTAATAATGTCATCATAACAACAGTGCTCTATCTGTCAGATGCTCTGAGGAAGAACTTTCTCAATGACAGGTTTGATTATAAGGTCTGGGACTCgtatttctatctatctgtaaTCTTCATCAACCAGCCCTGCCTCCAGCTTGAGACCTTCTCTCCTTCCAAGCGCAAGAAAATTCTAGAAAAgtatggcGATATGAGGGTGATGATGGGCTGTGAAATCTTCAGTATGTGGCAGAATCTAGGAGAACACAAGTTAAACTTCATCCCTGCTATGATCGGCCCATTTCTCGAGGTGACACTGGTTCCTCAGCCGGATCTGAGGAACGTGATGATCCCCATCTTTCACGATATGATGGACTGGGAACAGCGGCGCAGCGGCAACTTTAAACAGGTGGAGGCAAAACTTATAGACAAACTCGACAGTCTGATGTCAGAAGGAAAGGGTGATGAAACTTACCGGGAGCTCTTCAACAGCATAATTCCTCTGTTCGGTCCATACCCTAGTCTTTTAAAGAAGATCGAGAGAGAGACGTGGAGAGAGAGCGGAATCTCATTAATTGCAACGGTGACACGTCTAATGGAGAGACTGCTCGATTACAGGGACTGTATGAAACTTGGAGAAGTTGATGGAAAGAAGATTGGCTGTACTGTCAGTTTGTTGAACTTCTATAAAACGGAGCTGAATAAGGAGGAGATGTATATCCGCTACATCCACAAGCTGTATGACCTGCACTTGAAAGCACAGAACTACACAGAGGCGtcttacacactgctgctgtacGATGAACTGTTGGAGTGGTCAGAAAGGCCACTGCGGGAGTTCTTGAGTTACCCCATGCAGAGCGAGTGGCAGAGGAAAGAGTACCTGCACCTCACCATCATCCAGAACTTTGACCGCGGCAAGTGTTGGGAGAACGGCATCCTCCTGTGTCGAGAGTTGGCTGATCAGTATGAAGCGTACTATGATTACAGGAACTTGAGTAAAATGAAGATGATGGAAGCCTCCCTGTATGATAAAATAATGGACCAGCAGAGACTGGAGCCCGAGTTCTTCCGAGTGGGCTTCTATGGGAAGAAGTTCCCCTTCTTCTTACGGAATAAGGAGTTTGTATGTCGTGGTCATGACTATGAGCGTTTGGAAGCCTTCCAGCAGCGCATGCTCAACGAATTCCCTCATGCCATCGCCATGCAACATGCCAACCAGCCAGACCAGACCATCTACCAGGCTGAGGCCCAGTACCTGCAAATCTACGCAGTGACTCCAATCCCAGACAGCCAGGACGTCCTTCAGAGAGACGGCGTTCCGGACAACATCAAGAGCTTCTACAAAGTCAACAACATCTGGCGTTTCCGCTATGACCGCCCCTTCCACAAGGGCACCAAAGACAAGGAGAATGAGTTTAAGAGTCTGTGGGTGGAGAGGACAACGATGACCCTGGTGCAGAGTCTCCCAGGGATCTCCCGCTGGTTTGAAGTGGACAAGAGAGAGCTGGTGGAGGTGAGCCCGCTGGAGAACGCCATCGAGGTGATTGAAAACAAGAACCTGCAGCTGCGCACACTTATCACGCAGTGCCAGACACGCCAGATGCAGAACATCAACCCACTCACCATGTGCTTAAACGGCGTGATCGACGCTGCTGTGAATGGAGGTCTTGCTCGCTATCAGGAGgCATTCTTTGTGAAAGACTACATGATGAATCACCCAGAGGACGGAGATAAGATTGGACGCCTCAGAGAACTCATGTTTGAACAGGCACAAATACTGGAGTTTGGCCTGACTGTCCATGAGAAGTTTGTTCCACAGGACATGCGGCCACTGCATAAGAAACTGGTGGATCAGTTCCATCTCATGAAGTCTAGCCTAGGGATTCAGGAGCTCCCGGCATACGTGAGAGCCAGCCCGATCCATTTTCCCAATGGAAGCCCGCGGGTCGGTCGAAACTCAATGCCCAACATCTTGAATGTAGAGGGAGGACGTGTGGTGGCCCGCCGCAGtccACTCGGCTATCCAGCAGTGAACCGGTACTCTTCGTCCTCTCTGTCATCGCAAGCATCCAATGAAGTGAGCAACATCACCGGGCAGTCAGAAAGCTCAGACGAAGTCTTCAACATGCAGCCTAGTCCATCTACCTCGAGTCTCAGCTCCAATCATTCAGCCTCTCCAAACGTGACCAGCTCAGCCCCCTCCAGTGCCCGAGGTTCACCTCAGTTGtcagagaaacacaaacatgtcCGGGAGAACTCCTGCCTCTCTCCAAGGGAGAGACCCTGCAGCGCTGTGTTTCCCAATCCACTTGAAACCACACAGAGGACGATCCCGCATCCGGCAGGCGATGCCTCTCTGCCTCGCAGCGATCCCAACATCTCCATTCCAGACAAAGGGTCTCCTGCTAAAAATGTGAGATCCCAATCGCCAGGTCCAGTGTCAAGGTCACCACAAAAGtactCTGTGCCTCCTTTCACGCCCTCGCCCACGGAGTGCCCACCAGTAGGACTCGTACCCAACTCCCCAGTGCTCTCTGGCAGCTACAGCAGCGGCATCTCGTCTCTCAGCCGCTGCAGTGTTTCTGAAGCCTCAGGCACCGAAGCCACCCCCTCTACCGACCACGCCCTCCCCACCTCCGCCTCTAGTGGCTCGGATGAGCTTTTTCGGCGCGAGAACAAGACTCCGCCCCCTTACAGCAGCAACCCGCGGCGACCGGTGCCCCTCCCTCACAGCCTTTCCATTCCCACGAGTGCTGATGCTCCACCCATTCCACCAAAACCCCACCAGCTTCGCAGTGTTAAGCCAGTGGAGCAGCTGCCCAGACCCCGCCCCCTTCCCAGGAAAGTCTCTCAGCTTTAGTGCTGCTGGAAGAAAATACCATGCACCACCGATtgcactttctttctttggGTTGATAAACCTAAACTTTCAATTTACATAACAAACAGACTGGGTATGAAGGAGGATATGGCAGGGGTGTTACTGCTAATTCCTGCACTTTTCAGCAATCACAGATCAAGATGCTCTTGCTCTGAGTACCAGGGCATTTTTACATTCTGTAAATACTGATATGAAACGTATGTTTTGCCTTAAGTATTGAAATCAGACTATTTTACCATTGGGTAATGCACGTTTCTAAGTACATTTTAAGTACATTCTACTTTTTTAAATGGCTCAGAGGTGCTAATGGCCTCCATTCAGCTCTTCATGTAGGCACTAGATAATATCCATGGCTTTGTTGATACACTTGGACTCCTAAAAGaggctgccttttttttttttttttttttaggtggcCAGTTCACCAAACTCTTTTAATCATCTGCAGGAGCATGTTTTACAGGATTTCAGAGGTCAGGGTCTTGTTGATTTTGAGCACATCTGTAGATAGAACAGCAATCAGTTTATACAGAATATTCATCCATCACCTACTTGTTACGATAAGGTTTACAGTTTACATGATTTGGTCAGCACTCACAGCTGACACTTCAGAACTAAAGTCTGACCAAACAGGTCGAATGCTTGAGTTAGTTTACCAGGTATTGTGCCAAAGGAACAGGAAAAGTGTGTTTATACGGAGACAGTCATGTCGTATTTCATTCTCCAGCTCAAGATTCACATTAAGtctctgttttcatgtttttacacTATCATTTTGTGgtggttattgttttttttttttgttttttttttgaaagacagTCATGTTAAAGTATGATTGGGTTAGTCCGTGGCATGACTGGATATACCATGACAGGCTGGTACTCACGTTACACTGCCTGAGTAATATTTAGGAAAGGAGCTGAAGGCAGAAGCATCTGCCCATGTGCATAGCAGAAGCTAGCCTAATTATGGTGCAGCGCATAGTgactgtgacttttttttttttaacgtgtgCTGAAATTGCTGGAGCCTTTACAGAATTGAATCCTGCCATTCTTCGTATTCACATTCTGCTGTACCAATTACATGTCCTATTCACATACTACGCCAATTTAAAAGCGTTGAATTTTGCCCTAGATGCCATATCTCACTCTCAAAACTGCCAGTAGGAATTTTAGGAAATTGTTCATTTGAAGGTCTCAAACACAAGACTATATAGTGGACTGTGACAATATATCAGAGTAATGCTTAATTATGACATTAAGATTTGACCATTTCTACTTATACCAAGATTCTACTTTTAACAACACAATACACTGTATAgtagtatatatttttgtacaatCTCATTAATTGATGTTTTTAAAGCAGTGGTTCTCAGACTAGTCCTCACAGCCTTCCAGATGCTCTGCATTTTAGCCTATTAATCAGTTTTAAGGTATGAActacataagaaaaaaaaacatcatgggGATGTGACATTagggaaaaataatcaatgataagGTGGTGTGATCTGGCTGGATTAGTTACTGGTACCACcctgaaatgtattattttctatttaaaatttgctagaaattcatttttgttaagtaaagaacatgtcattatttttatccatttacagttacttttaatgttgtggaacgtctggaAAACAAATTAGATCCTGTtatgatttacattatagcagctgtaatcagtcattccttcaccaatCTGTCTCTGATCGGTTGTTGCAGTAATATACACTTGTCAAATTGCCTTATAGCCGGCTGTACTGCCAGAGCTACTGGAAATTAATcgacaccttttgaccaatcagatttgagagctcaagagcgctgtggtataactaTAGTATAGAGTCTGTTTTCAGTtagtttttcatgaaatatgttgagagatgttttttaaaatttgatcatttaatttttatgtctAATTGTAATGCATCAAAAATCACGTATTTGCCAAATTACCATATTGTATACATTCATATATTGTCACAGCcctatttataatttaatctcTATATTAATCTACTGCGTTTTTTTCTATACATAAtgatttacagagaaacctgCTGATTTGGGTATTTATAACAGTCCTGTCAGAGCCTGTTTTTGTGCCCCGCAAATGAACATTTAATGGAAAATACTGATCACCTCTCTCACTGCTACattcttatttctgtttatttctggaaaattaaataatgttcacaTTTTGTGAGTCATTTTTCAAACTTGGATTTGTTGAGAACTTTGGATAAACATCTTCATACGAATCAgtgcttgaaaaaaaattgtaaattataTGATAATGTCCTTGTAATTATGCCAAATACAATACCTTCTctattgtaaatataatgtttttaaaagaaagtgtAGCTATAACAAATTTACAGCTTTGAATGTCGGaacaaattataattataaatgttaaatatttatgattttttggggggggggtaGAACAACTGAGGTTGAGCttacacatttactgtacattCTAATGAATTCctgtgtaataaaatgttttcaacAAGCA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU337140 lncRNA downstream 137604 18346453 ~ 18346836 (-) True G284590
TU337106 lncRNA downstream 299448 18180379 ~ 18184992 (-) True G284559
TU337057 lncRNA downstream 391901 18092217 ~ 18092539 (-) True trnaa-ugc_14
TU337055 lncRNA downstream 395498 18088654 ~ 18088942 (-) True G284520
TU337033 lncRNA downstream 454525 18027734 ~ 18029915 (-) False ahcyl2b
TU337354 lncRNA upstream 105516 18698921 ~ 18747804 (-) False LOC113532190
TU337444 lncRNA upstream 226537 18819942 ~ 18823200 (-) True G284862
TU337448 lncRNA upstream 237520 18830925 ~ 18831139 (-) True G284866
TU337464 lncRNA upstream 268440 18861845 ~ 18862152 (-) True G284882
TU337468 lncRNA upstream 274652 18868057 ~ 18938095 (-) False G284885
XM_026923734.2 mRNA downstream 250701 18225500 ~ 18233739 (-) False tnni4a
XM_026923733.2 mRNA downstream 250701 18225500 ~ 18233739 (-) True tnni4a
XM_026923661.2 mRNA downstream 272736 18156824 ~ 18211704 (-) False cald1a
XM_026923664.2 mRNA downstream 296442 18156824 ~ 18187998 (-) False cald1a
XM_026923662.2 mRNA downstream 296442 18156824 ~ 18187998 (-) False cald1a
XM_026923597.2 mRNA upstream 71804 18665209 ~ 18675567 (-) False tmem168a
XM_034313317.1 mRNA upstream 71804 18665209 ~ 18675445 (-) False tmem168a
XM_026923598.2 mRNA upstream 71804 18665209 ~ 18675146 (-) True tmem168a
XM_026922762.2 mRNA upstream 146370 18739775 ~ 18744162 (-) True gpr85
XM_026923414.2 mRNA upstream 153626 18747031 ~ 18747833 (-) True LOC113532190
trnae-cuc_38 other downstream 272047 18212322 ~ 18212393 (-) True trnae-cuc_38
XR_003403330.2 other downstream 296442 18156824 ~ 18187998 (-) True cald1a
trnaa-ugc_14 other downstream 391896 18092473 ~ 18092544 (-) False trnaa-ugc_14
trnaa-ugc_13 other downstream 393818 18090551 ~ 18090622 (-) True trnaa-ugc_13
trnaa-ugc_11 other downstream 400586 18083783 ~ 18083854 (-) True trnaa-ugc_11
TU338301 other upstream 1719662 20313067 ~ 20320050 (-) True G285607
trnaa-ugc_16 other upstream 1828996 20422401 ~ 20422472 (-) True trnaa-ugc_16
XR_004579970.1 other upstream 2867421 21460826 ~ 21471100 (-) False LOC113544587
XR_004579971.1 other upstream 2867421 21460826 ~ 21471056 (-) True LOC113544587
XR_003404518.2 other upstream 2867422 21460827 ~ 21471100 (-) False LOC113544587

Expression Profile