RNA id: XM_026922951.2


Basic Information

Item Value
RNA id XM_026922951.2
length 1066
RNA type mRNA
GC content 0.50
exon number 4
gene id parietopsin
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 9289095 ~ 9291409 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGCATGGAACGAAGAGCAGAGGAAGTCACAGAAGAGACACCAGTAGATGTTTCTACTGTTTCTACTCTACTGTCTCCATTAGGATATGGGCTTCTGTCATTTTGGATGCTGATTGtcactcttctctctgtcttctgtAACTCTCTGGTTATCGCAGTAATGTTACGGAACCGACAGCTTTTCCTCCCCACAAACGTCCTCATTCTGGGTCTGGCCATCTCTGACTTGCTCATGACCCTCTGTGGATCAGCTGTTGGCACTGTGACCAACTACTATGGGCAGTTCTTCATGGGGAGAGAACTCTGCGTCTTCCAAGGATTCGCAGTCAATTACTTTGGTCTAGTCTCCCTGTGTACACTAACTCTGATGGCTTATGAGCGCTACCACATAATATGCAAGTCCATGGGTGCCTTCAAGATAACATGGCAACGTAATGCTAAGGGTCTACTTCTAGTCTGGTTCTACTGTCTGTTCTGGGCCACAGCACCCTTGCTAGGCTGGGGCTCCTATGGCCCCGAAGGAGTCCAGACCTCATGCTCTCTGACCTGGGAGGAGCGCACCTGGGTCAGCTACAGCTTTCTGATCCCGTACTGgttcttctgcttctttctgCCAACGTGGCTGATCATCTACTGCTATTACCACATACTGACCTCCATTAAAAAGCTGAACCAGAGTGTGGAGAATCAGGGAGGCAGATCACGGCAAAAAGAGGACAGACAAGCTATGTGCATGGTGGCTGCCATGATTGGTTCCTTCTTCCTCTGTTGGCTGCCTTACGCTATTGTATCCATGCTTGTGATCCTCGTGCCAGATATTTCCATATCCCCACTCCTTGCCTCCATGCCTGCCCACTTGGCTAAGACCAGCCCTGCATACAACCCCATCATCTTCTTCCTGGCCAAAAAACAGTTCCTGGACATGGCCTTGGAGATTATATCATGTGGCTGCTACAGCCCTACGTTTCCCACGTCAAGCAGTGCCAGAGAGGAGGAAATAGTGGAGACTGGCTCCAAACGGCTGAGTCCTAACGCCATTCAACCTGAACCTCCATTGACCGACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU331172 lncRNA downstream 95092 9193616 ~ 9194003 (-) True G279382
XR_004579873.1 lncRNA downstream 590304 8698430 ~ 8698791 (-) True LOC117599455
TU330836 lncRNA downstream 676753 8612118 ~ 8612342 (-) True G279064
TU330707 lncRNA downstream 898536 8389498 ~ 8390559 (-) True G278963
TU330657 lncRNA downstream 1049419 8238974 ~ 8239676 (-) True G278920
TU331392 lncRNA upstream 44927 9336336 ~ 9337530 (-) True G279588
TU331405 lncRNA upstream 94724 9386133 ~ 9387789 (-) False G279592
TU331406 lncRNA upstream 94724 9386133 ~ 9389747 (-) True G279592
TU331436 lncRNA upstream 192684 9484093 ~ 9484948 (-) True G279620
TU331437 lncRNA upstream 193658 9485067 ~ 9485769 (-) True G279621
XM_026922697.2 mRNA downstream 100160 9167589 ~ 9188935 (-) True tspan12
XM_034313077.1 mRNA downstream 100973 9167589 ~ 9188122 (-) False tspan12
XM_034313254.1 mRNA downstream 655140 8626921 ~ 8633955 (-) True hsp90b1
XM_034313063.1 mRNA downstream 740467 8488152 ~ 8548628 (-) False sbf1
XM_026923675.2 mRNA upstream 47359 9338768 ~ 9347046 (-) True LOC113532331
XM_026923676.2 mRNA upstream 47359 9338768 ~ 9347043 (-) False LOC113532331
XM_026923677.2 mRNA upstream 47359 9338768 ~ 9347043 (-) False LOC113532331
XM_034313366.1 mRNA upstream 59469 9350878 ~ 9359050 (-) True LOC113531956
XM_026922643.2 mRNA upstream 100620 9392029 ~ 9423268 (-) True mkln1
TU331209 other downstream 80532 9207351 ~ 9208563 (-) True G279415
XR_003403340.2 other downstream 479757 8809220 ~ 8809338 (-) True LOC113532431
TU330637 other downstream 1069415 8218561 ~ 8219680 (-) True G278912
TU330291 other downstream 1221018 8053088 ~ 8068077 (-) True G278634
trnal-aag_11 other downstream 1695287 7593727 ~ 7593808 (-) True trnal-aag_11
trnay-gua_2 other upstream 331124 9622533 ~ 9622619 (-) True trnay-gua_2
TU332243 other upstream 978348 10269757 ~ 10296121 (-) False LOC113532274
XR_004579975.1 other upstream 1703696 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332827 other upstream 1947526 11238935 ~ 11259392 (-) True vegfab
TU333108 other upstream 2294895 11586304 ~ 11588024 (-) True G281074

Expression Profile