RNA id: XM_034313260.1


Basic Information

Item Value
RNA id XM_034313260.1
length 2628
RNA type mRNA
GC content 0.47
exon number 16
gene id LOC113531968
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 15059512 ~ 15078787 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACGCCCATATCCTCTCGCGCGCCGCGTTTACTCCCCCACTGAACTTACTCCATGCGCATTCTTCTCTCTCAGAACTTCGCCTGTTTCCACAGAGAACGCGACCGGTCAGTTAGGAACTACAGCGGAAATCTCTGtgtgattgtgtgtgacaGAAAGATAGCCATTATGCCAGAGGCCAGAGGACAAGACACTGTGATCGAGCCTGCTGAGGATCCTCAGATACGGAGAGAGAAGGGCCAAGGAACAACgccagagcagagagagaagtgGGCCAACAAGACCGAGTTTCTGCTGTCCATGGCTGGTGAAATCATAGGCCTGGGCAATGTGTGGCGCTTTCCTTATCTCTGCTACAAGAACGGAGGAGGTGTATTCTTCATCCCTTATTttgtcttcctcttcttctgtgGCATCCCTGTCTTTTTCCTGGAGACTGCATTGGGTCAATACACCAGTGAAGGAGGGATCACAGCCTGGAGGAAGATATGTCCTATATTTGAAGGAATTGGTGTAGCATCTCAGGTTATTGTCATCTACCTGAATATCTACTACATTGTGGTTCTTGCCTGGGCGGTCTTCTACCTCTTCAGCTGTTTCCAGACCACATTGCCTTGGATCTCCTGTGCCCACGAATGGAACACAGAATCTTGTCATGTGTATAACAAAAGCTTACAGGACTCTGGCCTGCACAAGGCAGATGCTGACTGGTCCTTCCTGTACAATGAAACCTATGACTACAGTAGAAGTATCAACGTCTCTACACCTTTCAAGGTTGTCTCTCCAGAGGAGGAATTCTGGCTtcATCGCGTGCAGAGGATATCCAGCAGTGATTTCCTGGGCCCACCGCACTATGACCTGACACTCTGTCTTTTGCTGGTCTGGATTATCTGTTACTTTTGCATCTGGAAAGGAGTCAAGACCACAGgcaagGTGGTCTACTTCACAGCCACGTTCCCATATGTCATGCTGCTGATTCTGTTTTTCCGAGGAGTCACTCTACCTGGTGCTGGGGCGGGAATCAGCTATTACCTGTACCCTGATATCTCCAAACTCTCCAATCCTGacgTTTGGTGTGACGCAGGGACCCAAGTCTTTTTTTCCTATGCCGTGTGTCAGGGTGTCCTCACCGCTTTGGGAAGCTATAACAAATACCACAATGATTGCTACAAAGACTGCATCGCTCTCTGTGCCCTGAACAGTGGCACCAGCATCTTTGCAGGCTTTGCTGTATTCTCTATCCTGGGCTACATGGCTCATGAGCTGTCCTTGCCTATGGAGGACATAGTGAAAGCAgGTCCAGGCCTGGCGTTTATAGCATATCCCAAAGCCCTGTCTCTCCTCCCAGGCCCTCAGTTCTGGTCTGTCCTTTTCTTCCTGATGGTCCTCTTCCTTGGACTAGACAGCCAGtttgtgtgtgttgagagtcTAGCCACAGCACTCACCGATGTTTTCCCTGAAATTCTGAGGAAGCCAAAGCGCAGAGAGATTCTGGTGTTGCTCATTGCTGTGGTCTGCTTCCTGCTGGGCCTTCCTCTGGTCACTCCGGGTGGGCTCCACCTTTTTAAGCTGATAGACACGTATGGCCCCAGTGGAACAAACCTGCTCCTCATCGCCTGCTTCGAGACGCTTGTCATTGCCTGGGTGTATGGTGCAGACCGTTTTTTTGATAACATCGAGGACATGATAGGATATCCTCCTTTGCCTGTGCTGAAGTATTGCTGGCTCTTCGTCACCCCGTTCATCTGTGGAGCCACTCTCTTGTATGATCTGATCAGGAGTCCACCACTCAGCAGTTCAGCAGACTTCGTACCGAGCTGGGGTTCCGGAGTCGCTGCCCTGCTCACTCTCACACCGATGATCTGTGTCCCCATCTTCATCCTGGTCGCCGTCAAAAGGGGTCCTTACCTGATCGTACCCTCTGCTGACCTGCAACAGCGCAGCCCAAACAAGCCTCGGCTAACTCTGTGTGAGCATGTCATCATTAAGAGACAGAAGCTTTCTCACACAGAGGGAGACAAAAGTGTCGAGGAAAAAACCCTGAAAGAGGACACCACTGACATGTGATGTGAAGTATGACATCAGCAGACAGTCTCTGACCTCATACTCTCTGGAAGGATGCAGAAACTCTTTGCTAGATAATGAAACCTCAAGTGAAATCAACCTCAGCTACAGTTCACAAAAGCAAGAAAATGATGCTGATCGATAGAGTGAGACTCTGGTTGTTTTTcccactctcttttttttaatgtataatataagcTCATTTAATAGATGTATCTTTTGAGTAAAGACTGATTAAAGGTGGACCTGATATTTCCACTGCTAGCACTGGTGATATAGCTGTCCATAATACAGGTACCTTGgtgtcatattttatattttaactctcATGGGACTCATCAGTATAAATTATGACTGAGACAAGATTGagcatattcattttaatatggCTTTTGTATGGTTTTGTAAATCAATATACCACAAATATGAAATTGTATCCATGTTGACATATGTAACCAGAATTAGTAATATCTGCCTAAAACTGGTGTTTTTACATTCCATTACATTTAATCTATGTTTTTACTTCTAAGCAGCACTGCTGTACAGCAATACAGATAAAACTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU334999 lncRNA downstream 320075 14739216 ~ 14739437 (-) True G282673
TU334974 lncRNA downstream 328508 14715045 ~ 14731004 (-) False G282649
TU334971 lncRNA downstream 328508 14721809 ~ 14731004 (-) True G282649
TU334700 lncRNA downstream 668955 14389823 ~ 14390557 (-) True G282410
TU334699 lncRNA downstream 685999 14372731 ~ 14373513 (-) True G282409
XR_003403333.2 lncRNA upstream 130563 15209348 ~ 15213255 (-) False LOC113532334
XR_003403332.2 lncRNA upstream 130563 15209348 ~ 15213255 (-) True LOC113532334
TU335298 lncRNA upstream 192209 15270994 ~ 15271200 (-) True G282950
TU335356 lncRNA upstream 271921 15350706 ~ 15353441 (-) True G282999
TU335389 lncRNA upstream 309163 15387948 ~ 15390101 (-) True G283022
XM_026922976.2 mRNA downstream 12041 15032648 ~ 15047471 (-) True slc6a1l
XM_034313070.1 mRNA downstream 173940 14873850 ~ 14885572 (-) False LOC113531970
XM_026922975.2 mRNA downstream 173940 14873851 ~ 14885572 (-) True LOC113531970
XM_026923243.2 mRNA downstream 1200839 13851543 ~ 13858673 (-) True kin
XM_026922586.2 mRNA downstream 1230004 13808409 ~ 13829508 (-) True LOC113531720
XM_026922888.2 mRNA upstream 22571 15101356 ~ 15111265 (-) True pyroxd1
XM_026922889.2 mRNA upstream 22571 15101356 ~ 15111082 (-) False pyroxd1
XM_026922587.2 mRNA upstream 37442 15116227 ~ 15118561 (-) True LOC113531721
XM_026923156.2 mRNA upstream 43949 15122734 ~ 15138477 (-) False LOC113532053
XM_026923158.2 mRNA upstream 43949 15122734 ~ 15135324 (-) True LOC113532053
XR_003403346.2 other downstream 2478449 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 3399185 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 3471488 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 3800120 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 4052369 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU335292 other upstream 95563 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 1879739 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 2024780 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 2900000 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 2900000 17978785 ~ 17980246 (-) False LOC113532261

Expression Profile