RNA id: XM_026922976.2


Basic Information

Item Value
RNA id XM_026922976.2
length 2208
RNA type mRNA
GC content 0.47
exon number 15
gene id slc6a1l
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 15032648 ~ 15047471 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGACTTTCTTTTGACTCTGTAATGGGCAGCTGGGAACTAGTTCTCACTTGGGAGTTCTCCACTGgatttttgctcttttattcAGCTGAGATACCTTCATATCTCACAGCTGAATGATCTGTCTGCTGTCCACTACTGAAGATCTGCACAGCTTGTGGAACAATCGCATCACGTATCGGACATTAATACGGCCCAGTCTTCACTACAATAAGTACTGTTTAGTACACTAGCTCAGTCCTTAGGTGGactgtggaacatctgtgaaccTGCCATGGGAAAAACAGGGGATAGCACTGTGCAGCTCAACTCACCATCGGAGCTCAAGCAGGCTATTCCATTTGAGGAAGTGAACCACAGTCTGACTTCTGCTCTGAATGAGAGCAAGCAGAGCCTTCCTGATCGAGGCACCTGGAAGGGCAAGTTTGACTTCCTGCTGTCCTGCATAGGATATGCCATTGGCCTGGGAAACGTATGGAGATTCCCATATCTCTGTGGGAAAAATGGAGGCGGAGCATTtcttattccttacttcacTACATTGGTGTTTGCTGGGATTCCTCTATTTCTGCTGGAGACTGCACTAGGACAGTACACATCAGTAGGAGGACTAGGGGTCTGGAAACTCATACCCATGATGAAAGGTGTAGGTTTGGCTGCTGCAGTGTTGTCCTTCTGGCTCAACATCTACTACATCGTCATTATTGCCTGGGCCCTCTACTACCTGTTCAACTCCTTCAGATCAGAGTTGCCTTGGCAGAGTTGTGATAACCCCTGGAACACCGATCACTGTTTCTCCAACTACAGCCTGACTGATACCACCAACCTGACCAGCGCTGTAACTGAATTTTGGGAGAGGAACATGCACCAGCTGAGCAGTGGTCTGGAGGAGCCGGGTGAGTTGCGCTGGCCGCTGGCTGGGACTCTTGCTCTGGCCTGGGTACTCGTCTACTTCTCTATTTGGAAAGGGGTTGAATGGACTGGAAAGGTGGTCTATTTCTCTGCCACTTATCCGTACTTCATGCTCTTCATCCTGTTTTTCCGAGGCATCACTCTCCCAGGGGCTAAAGATGGCATTCTCTTCTACATCACCCCTGACTTTAACAAGCTCCAGAAATCTGAGGTGTGGTTGGATGCTGCCACTCAGATCTTCTTCTCTTATGGTCTCGGTTTGGGTTCTCTGATTGCTCTGGGCAGCTACAATACCTTCAATAACAATGTCTACAGAGATGCCATCATTGTGTGCTGCATAAACTCCTTCACCAGCATATTTGCTGGCTTTGTCATCTTCTCCATTGTAGGATTCATGGCCTACATCACAAAAAAACCAATCCAGGAATTAGCTGCCTCAGGTCCAGGTTTGGCGTTTCTGGCATATCCTCAGGCTGTGACTCAGCTTCCCATGTCCTCTCTGTGGGCCATTCTCTTCTTCTCCATGCTTTTGATGCTTGGACTAGACAGTCAGTTTTGTACTGTGGAAGGTTTCATCACAGCTTTGGTAGATGAATATCCCACCATCCtaaggaagaggaagaaattATTCATCCTCGTGGTCTGCATTATCTCATTCGTCATTGGCTTGTCCAACATCACACAGGGTGGCCTGTACGTGTTCAAGCTATTTGACTACTACTCAGCCAGTGGGATGTGCCTCCTCTTCCTCGTCTTCTTTGAGACAGTCGCTATAGCCTGGTTTTATGGAGCAGAGAGGTTCTATAAAAACATTGAGGAGATGATCGGCTATCGTCCATGTGGCTGGTGGAAACTCTGCTGGCTCTATTTCACCCCATCAATCTGTTTGggggttTTCACCTTCAGTGCAATAGAGATGACCCCGCTGACCATGGGCAAGTATGTGTTCCCAGGCTGGGGACAGGGCATCGGCTGGCTCATGGCTCTTTCCTCTATGCTCCTCATTCCTGGATACATCATTTACATGTTCTTCAACATCAAGGGAAGCATTCATCAGCGCTGGCACAAAATGACAAAGCCCAGTGAAGAAGCCAAGCCAACAGAGAACCACCATTTAACACAGCAACATTACCAAGCGGGAATAATGGGAGAAGCGTCTGTCTAATATCACCTGGAAACTGAGGGCACTACAGGAAGGCACTCTGGCCACAGCACTGATATTTATTCTTTCTGTTTAGCTCAATCAGTAAATGAATATAAGAGCATAATATAAAGAATGTATAAAAGACTCACCCAAA

Function

GO:

id name namespace
GO:0015812 gamma-aminobutyric acid transport biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0003333 amino acid transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005328 neurotransmitter molecular_function
GO:0005332 gamma-aminobutyric acid molecular_function

KEGG:

id description
K05034 SLC6A1, GAT1; solute carrier family 6 (neurotransmitter transporter, GABA) member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU334999 lncRNA downstream 293211 14739216 ~ 14739437 (-) True G282673
TU334974 lncRNA downstream 301644 14715045 ~ 14731004 (-) False G282649
TU334971 lncRNA downstream 301644 14721809 ~ 14731004 (-) True G282649
TU334700 lncRNA downstream 642091 14389823 ~ 14390557 (-) True G282410
TU334699 lncRNA downstream 659135 14372731 ~ 14373513 (-) True G282409
XR_003403333.2 lncRNA upstream 161877 15209348 ~ 15213255 (-) False LOC113532334
XR_003403332.2 lncRNA upstream 161877 15209348 ~ 15213255 (-) True LOC113532334
TU335298 lncRNA upstream 223523 15270994 ~ 15271200 (-) True G282950
TU335356 lncRNA upstream 303235 15350706 ~ 15353441 (-) True G282999
TU335389 lncRNA upstream 340477 15387948 ~ 15390101 (-) True G283022
XM_034313070.1 mRNA downstream 147076 14873850 ~ 14885572 (-) False LOC113531970
XM_026922975.2 mRNA downstream 147076 14873851 ~ 14885572 (-) True LOC113531970
XM_026923243.2 mRNA downstream 1173975 13851543 ~ 13858673 (-) True kin
XM_026922586.2 mRNA downstream 1203140 13808409 ~ 13829508 (-) True LOC113531720
XM_026923772.2 mRNA downstream 1245214 13782762 ~ 13787434 (-) True LOC113532385
XM_034313261.1 mRNA upstream 12041 15059512 ~ 15078787 (-) False LOC113531968
XM_034313260.1 mRNA upstream 12041 15059512 ~ 15078785 (-) True LOC113531968
XM_026922971.2 mRNA upstream 12041 15059512 ~ 15078751 (-) False LOC113531968
XM_026922970.2 mRNA upstream 12041 15059512 ~ 15078742 (-) False LOC113531968
XM_026922972.2 mRNA upstream 12041 15059512 ~ 15078196 (-) False LOC113531968
XR_003403346.2 other downstream 2451585 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 3372321 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 3444624 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 3773256 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 4025505 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU335292 other upstream 126877 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 1911053 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 2056094 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 2931314 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 2931314 17978785 ~ 17980246 (-) False LOC113532261

Expression Profile