RNA id: XM_026922985.2


Basic Information

Item Value
RNA id XM_026922985.2
length 3820
RNA type mRNA
GC content 0.44
exon number 4
gene id ppp1r3aa
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 18781747 ~ 18787897 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGGCAGTCACGGTGTGTGGGGTATCAGTGCGCTTGAACTTTCCTGCCTCCCCTGTCTCTCAGTCATACACCGTGCACGAATATCGGTTGAAGAACCTGGACCTGCCATGGCTTCCTGCTACACTGAGCCGTCAACACTCAGTGCTTGGATACAagatgaagatgaggaagagaaagagccAAAATCTCCACAAAGGAGCTCAAGTGATGAGTCTGAGGAGTCAGAACCTGAGCCATCACTGGCTTCTGTGGTGCGAAGGAAGGTTTCTTTTGCAGACGCTTTTGGCTTGGACTTGGTTTCTGTTAAGGAGTTTGATAACAGAGTTGAGAGTGCtgaaggaagagagggagaggagtaCCACCTGTCCTGCATCTTCAGCGTCCCAAACTCAGATGAGGAGCTGAAGCTCCGGCTTTGGCAGAACAAGCTGGAGCTGGAGAGCATTGAGCTCCTGCCTGGCTCCACCACCATCCGTGGCACTGTCCGTGTGCTTAACCTCTCTTATCACAAGGTTGTTTATGTACGCACTACTTTGGATGGATGGCAAAGCCACTTTGACCAGCTAGCTGAGTATGTTCCTGGATCCAGCGATGGAGAGACAGACCGCTTCTCCTTCCAACTCACCCTGATGCCTCCCTTTCCACCCAGTGGGGCCCGGCTGGAGTTCTGCCTCTGCTATGAATCCTCCACTGGAATCTTTTGGGCAAACAATGGAGGTATGAACTATGTGCTGTTTTGCCATAAGAGAGGAAGGAGAACActgaaagagaaggagggagggaaagaaaggGAGACTGAAGAGAACGatcaaaagggaaaaaagagctGCTTGAAAGCTATAAAAAAGGGGAGTTGTGCTGAGTCGAAGCCCACGGACAAGAACAGTGAACTCTCAGagcaAGAGTCACCCAGGTCTGTAGAGAATCAGAAAGGAAAAACTCAGCACATAGCTGAAAGTCGATCAAGAGATGCACTAGAGGAGAACTGCAAAACTTTGACTGAAAGACGGAACAGAAGACGAGCAGCTCAGTTGGCACACTTGCAAGACTATTTCTCTCATAGGGACACAGAAGTCCAGCTAGGTCAACCTTCTCATCAAGAAAAATCTAAGAGAGATTTAAATGTGGTACTACCCATGCCACAGCATAGTATTCCAGTGATGACAGACACTTCTAGTACACTTCAAGTATGCAGCAGAAAGGAGCAAAATGGGAATACATCATTGATTCTACCTGACCATCAGATTCCCTTACTTCCCCTGGACTGGGGTAGAAACATCTcatctccacctctctctcatCCAAACACTTCTGAGATCATTAGTGGAACAAAGCCAGATGCTCTTGAAAAAGAGCGAACAGAGGATGTGTCAACAGAGTTCTCAAATGATGCCTGGAAAGCTTTCCTCAGTGGTACAGATAGTATAGACAACCAGAACAATCCTTTGAACCAAAAGTGCTTGCTTTGCGTTGCAGGGTCCAATGATTCCCAGGCATCAAATACAGAATATGATGTGTCCAATATAGGGGACAAAGTATTATCAGTGTGGAGTACCCAGGAGTCTGCAGTGACCAGTGGGAATGGCTCACACCAGTGCTTTACAGCAATGGAAACTCTAGAGTCTGATCCTGCTGAACTGTCACAAGCTCTTGACCCCAGTCATATCAGTGAGGTGTTGAGTTATAAGGATCCTGAAAAGGCACAGATCATTTCTGAACCACATACTGTTCAGGAATCAGAATCAATCTGGGCCCAATGGATGCCTGGTGTCACTGAGGCCCCACATGACAGACACATACTTAGTGAAAGGCCTTTTAGTGAAGACAAGCCCATGCTATTAACCAACCCAGGGGAGACAGCCCATGCTGAGGATGCCACAGAGCCACTGTATTCCAAATCAGGAAATGGAGTCTTGCTTGAAGAATGTGCAAGCAGTACAGGGTTCTTAGACACAGAAATGAAGGTAAAAGGGGACACATACAGAGTAGTTGAAGATATTTTGACATTTAACGGGATCAGCAAGAAACCCTTTACAGACAGTAGGGAGTCTTTAGAACGACAGTATATAGATGAAAgcaaaaaaccaacaaaaaagaaagaaaatgagaaagtaTCCCAAATGAAAAGGATATCTTGGAGTGAGTATTCTGAAGATGCTTTAGTGGTACTAGAAAGCAGATTGCAAACAGATGAACAGGAACCATCCTGTCTAAAAGATGAGAACACAGAAATATGGATTTCATCGAGGAcaagtgtggtgtgtgatgaaggTGAACCACATAAACAGACTGAATGTCTCGATAGGGGAGAAGAGGGGGTTGTGTGTTATGAGTTAGTGAAAAAGGGATTCTCTGACTCCAGTGAGAGGCAAGGAGAAGAAATATCCTCTGTAGAAAATATAGCTAATAGAGAATgtgaaaatggtttaaaaactGAAGGTCAGGGTATATATGGAAGGCAGAATGAGGGTGATGACTACACAGACAATTACCTACACAAGGAACTACACAAGCTTCAAAGTTCCCCTGAAACCTGCCCACATGCACCCAATCTATGTATAACTAGCCACACCAGTAGTCCACCTGGGCACTTCACCTGGACAGAATCTGTGAGTGAGGGTGaacttcttctttttcctgcCCCTCATAAGGGTTTTGAGAGTGAGGAGACTCTGAGGTATAGGGTAGCTCCGGACCTCCAGGATCCAGGTGTGGGGACTGAGTTTCCTAGCTCATTCTCCAGGACGGCTTCTCCCTCAGTGGGCACAATGTCAAGCTGGCTGCTGGTGTGCTGGGCCAAAATCTCTACTCTGAGCTACATCGCTGGGGCCCTCATGTGTGCCATCCTGTTTGTGATCTTTGTAACTGCTTATTTGCATGACTTCCCAGTTTGCCTGGCCATTTACCTGTTGTCTGCATGCTGGTGGTGTAGACAGGGCATGAAAAAGCATGTGACCACAGCAGACAGTGTGGACTGACATCAGTAAAGTATAGGTTCCACTTTAAGGGCCCAACACCAGTTGTCTACACGTACGAGAGTGGCGTTTCTTTCTTCTGAAGATGTTGCtttcctaaataaaataatttgatgtTCATTTCTGAAGGGCAGCTTCCTACATTTTGTGAAGATGGTGAATATAACATAGCGGTGCTCAAATATCGGAGACCTGGATATGAAACCAAGTTAATGTAGCATCTAGATCATACATGTCTTGCTTGTACAGACTCTCAAGAGTCAGGCTAACCTAAACTGGGAATGTTTGacattcatttcatatttagtATTAATTACTATGGTATATTTTACTTACAGTGATAGATATAAGTTTCAATGATCCCTATTTGCATAAAAAATTCTGTAGTAcagatgttcagtgtgtgagtttagtcGCTCTGGTAGAGTTTAGCAGCTCTAagtttctaaacatgaaccagcacAGTTCTGTAGCAGATTATCTGTTGTAGTTTATCCAATCAAAtgcatttatatgaaatatttagctAAAGGCAGCACAATGGACCAGACACTAGCTAGAGTGTTAGATACATTGGATCAACAAGAggagagttttcacagatttttctcTGGGCTGATTAGTGAACTGACGACattgcttgtttaaaaaaaagtcaactaaAGAATGTTTAAACATGAATGGGCAGAcaagtatgtgtttattatcactttcaaattaaaaaaaaaatgttcaaggtCTGTGGTGCTAGTCAAAGTGTGTTACGtgccactatgaaacaaaatgtTCAATTGTCTTCATCTGTTTAATGGTTAAGAATTAAAACTCAaggttgtcaccattca

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis
ko00030 Pentose phosphate pathway
ko00051 Fructose and mannose metabolism
ko00710 Carbon fixation in photosynthetic organisms

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU337354 lncRNA downstream 33943 18698921 ~ 18747804 (-) False LOC113532190
TU337140 lncRNA downstream 434911 18346453 ~ 18346836 (-) True G284590
TU337106 lncRNA downstream 596755 18180379 ~ 18184992 (-) True G284559
TU337057 lncRNA downstream 689208 18092217 ~ 18092539 (-) True trnaa-ugc_14
TU337055 lncRNA downstream 692805 18088654 ~ 18088942 (-) True G284520
TU337444 lncRNA upstream 32045 18819942 ~ 18823200 (-) True G284862
TU337448 lncRNA upstream 43028 18830925 ~ 18831139 (-) True G284866
TU337464 lncRNA upstream 73948 18861845 ~ 18862152 (-) True G284882
TU337468 lncRNA upstream 80160 18868057 ~ 18938095 (-) False G284885
XR_004579967.1 lncRNA upstream 130499 18918396 ~ 18922870 (-) True LOC117599567
XM_026923414.2 mRNA downstream 33914 18747031 ~ 18747833 (-) True LOC113532190
XM_026922762.2 mRNA downstream 37585 18739775 ~ 18744162 (-) True gpr85
XM_026923597.2 mRNA downstream 106180 18665209 ~ 18675567 (-) False tmem168a
XM_034313317.1 mRNA downstream 106302 18665209 ~ 18675445 (-) False tmem168a
XM_026923598.2 mRNA downstream 106601 18665209 ~ 18675146 (-) True tmem168a
XM_026922669.2 mRNA upstream 307495 19095392 ~ 19107426 (-) False tfec
XM_034313021.1 mRNA upstream 307499 19095396 ~ 19103077 (-) False tfec
XM_034313020.1 mRNA upstream 307499 19095396 ~ 19103077 (-) True tfec
XM_026922670.2 mRNA upstream 307500 19095397 ~ 19105351 (-) False tfec
XM_026923199.2 mRNA upstream 352548 19140445 ~ 19161281 (-) True lta4h
trnae-cuc_38 other downstream 569354 18212322 ~ 18212393 (-) True trnae-cuc_38
XR_003403330.2 other downstream 593749 18156824 ~ 18187998 (-) True cald1a
trnaa-ugc_14 other downstream 689203 18092473 ~ 18092544 (-) False trnaa-ugc_14
trnaa-ugc_13 other downstream 691125 18090551 ~ 18090622 (-) True trnaa-ugc_13
trnaa-ugc_11 other downstream 697893 18083783 ~ 18083854 (-) True trnaa-ugc_11
TU338301 other upstream 1525170 20313067 ~ 20320050 (-) True G285607
trnaa-ugc_16 other upstream 1634504 20422401 ~ 20422472 (-) True trnaa-ugc_16
XR_004579970.1 other upstream 2672929 21460826 ~ 21471100 (-) False LOC113544587
XR_004579971.1 other upstream 2672929 21460826 ~ 21471056 (-) True LOC113544587
XR_003404518.2 other upstream 2672930 21460827 ~ 21471100 (-) False LOC113544587

Expression Profile