RNA id: XM_026922997.2


Basic Information

Item Value
RNA id XM_026922997.2
length 3534
RNA type mRNA
GC content 0.46
exon number 17
gene id hcfc2
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 7946410 ~ 7956609 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATGATCTCATGAAACCATCTCTCAACAGCAGTTTATAGTGCAGTTTGTAGTGCGGAAGGGAGAAAGGGGAGAGTAGGCGAGTAATAGTTGATTTGAAACGCGTCCCTTTGATAACGGCGGCACCGCGTCCGACACAAAACTCCGGCCGGCGGTGCAGCGTTCAATGTCTTGAGTGgtacactgtttaaaaaacaaacaaacatctttATAATTGTTTGTAAGGATGGGAAGCGAGGCTCCTCTGTGGAAGCGCGTGCAGGCGTTTACCGGCCCGGTTCCTCGGGCAAGACACGGACACCGAGCGGCGGCCATCCGGGAGCTGATAGTGGTGTTTGGAGGTGGAAATGAAGGAATAGCGGAGGACCTGCATGTTTATAACACAGTTTCCAGACAGTGGTTTCTTCCCGCAGTGAGAGGGGACATCCCCCCTGGCTGTGCCGCACATGGTTTGGTGTGTGAAGGCACACGCATTCTGGTGTTTGGAGGAATGGTGGAATTTGGACAATACAGCAACAGTCTCTACGAGCTGCAGGCCAGTCGCTGGCTGTGGAAGAAGCTGAAGCCGCGGCCACCAAAGAATGGTTCGCCTCCTTGCCCTCGTCTGGGACACAGCTTCACTCTCCATGGCAACAAGTGCTACCTGTTTGGAGGGCTGGCCAATGACAGTGAAGACTCAAATGGCAACGTGCCTCGATATTTGGATGATTTCTATGAGCTGGAGCTACAGACACAGTCAGGAGTCAAAGGCTGGATCATCCCTGAAACAAAAGGAGGGGGTCCATCACCCAGGGAATCTCACACGTGTGTGGCGTACAGCGGAAAGAGCGGCAGCTCCCCGAAGCTTTACATTTTTGGGGGCATGTGTGGGAATAGACTAGCAGATCTGTGGCAGCTGGATATCGaCACTATGACCTGGTCATTACCTAAAACTGCAGGACCCTGTCCTTTACCGAGAAGTCAACACTCTTCAAATGTGATTGGAAACCAGATGTATGTGTTTGGTGGCTGGGTTCCTGCAGAGAAGAATGCTGTAGGAGCAGAATGGATCTGTACTAACTCTATGTCAGTGCTAAACCTCGACACAATGATGTGGCATGGTCTGACCCCTGAGCGCCAGCGGCAGCGGCAGTCAGGCACAGCCATAGAGGAGGGGGAAGAGAAAGGTCATATCCACTGGCTGAAAGCTCGCGCGGGTCACTGCGCTGTGGCCATCGGAACGCGCCTGTACATCTGGAGTGGACGAGATGGCTATAGGAAATGCCGGAACTACCAAGTGTGCTTCAAAGACCTGTGGTATTTGGAAACAGAGAAGCCAGCGACACCAGCTGCTGTGTTTTTGGTCAAGTCCACTATCAACATGTTGCATGTAGCCTGGCACCCTTTACCTGCAGCCGAGTGCTACCTGCTTCAGTTGCAGTACGTTGCTCCGCCTCCAGCCTCACAAACACAGCCCTCTGATTCGCCAACTATCCCAACCCCACCCACTAGTCTCACAGAGGGGGAGGAGCCTCTACAGAGACATACACAGTCAGAGCCGTCTCGTGGAGAAGGAGATGGAAACTACGAGAGCTCAGCACTACAGGAGAGGACTGGCAGTGGTGAAGCCAGAGCAGAGACCACAGATAAACAGAACAAATTGGAGTTCAATCCTGTAGCTGGCATCAACACAGATGAGTCTGTAAATAGGCAGCAGACGGCCACTTTGAGACCTGTGACAGAAGAAGCGAATGACCAGAATGGGACTAAATCTCAGCAACTGCAAGAACATGAAAATCTACCCAACCCTTCAGGACAGAGTGAAAGAGCTGATGTCTCTGCATGGTTCGATGTTGGTATATTTAAAACACTCTTTGCTGAGGTCACACACTACTATCTACCCTCTGAGAATAGGAGCACTGACCAAATCTCCAGTGACAGTGAGTGGAAGATGCCAGGACCTCACAGTTTTGAAGGACGGGAAAAGCAGGAGCTTACATCTAATGTTACCTACCGGTTCAGAGTAGCAGGCCTAAATTGCTGTGGCCGAGGAGACTTCAGTCCCATTGGGGAATTTAAGACGTGCCATCCTGGATTCCCAGAGGCACCTCCTGCTGTCAAAATCACTAAGGCATGTGATTCAGTACACATCACATGGGAGTCGCCCTCCAACGCATCAGGGAAAATTCAGGAATATTCCATGTACCTGGCAGTGAAGAAGACGCGAGGAAACGCCTCGGAGAAGCCGGGAGATCTTACCTTTATACGCATTTACCGTGGTGCCAAAACCTCATGTACAGTGAACGCTGCGAATCTGAGTAACGCATACATCGACTGCTCGGCTCGTCCTGCCATTGTGTTCCGCATCGCCGCCAAGAACGAACGTGGCTATGGGCCTGCCACTCAGATCCGCTGGCTACAAGAGagcaataaaatcaaatcagctTTAAAACCAGACTCCAGCCCTACCAACCCTGAGCCAGACGACATTATTAGCTCATGATGGCTGCATGGGAACCGTTCTCACTCTCAAATCAGCTGGGCCTATTTTCACAGGAGccatacagtgttttattttgtattttctaaCATTCTGTTCAGTCTCAGCTATAGATAATACAACTTTTATGTACCTAAGTGCATTTGTACTTGCTGTAAATGTATGTTTCCTAACTTATTTTTTATACTGTGGATTGTtgtacataaacatttttaagcTGTTAGTTTTTCACAAATTAGTGTTTTAgtgatgaagtgttttgtttccAAATCGGCATTTTTCTCAGTGAAGGCTGATcctatatttttgtatttttacttaaaatacaCCCCTCAAATAATTTCctgaaaacagacaaaatcTGCATAGAAATACCCTTTAATCTGCTATCTACCTGTGTTCAGCAAGTTTTAGGTGTTAATGGTTCAAaacaattcattttatattctgtAAATGATGTCAGTCTTTGGGGCTAGATGGTTTATTTTGCAGTGTTAGGCTCCTCCAAAACCTCTGCAGTTCAAAGTATTACTACTATTCAGAGAAGCCCTTGAGCAATTTGCTAAAATTGTAATAACTTACACATAACTACACAAcctccacataaactgatttaaaggCATTACTGTCTACATTAcattaagttttctgtaaggagctCTTTAACAGTTACgtaaggagtctctagtgtcagcatTTATTctagtcagagataaagctgtaattcaatgttcagacacaggaaagtcttcaggacagagggttAGGTGCATTTTtcgtcttactaacttcaaaagagagaaagagataaaaatgcTGGTTATAGCTGGAGACTGGTTATAGATTTTATAACATGTGACAACAGGACCTAACTTTCTTCATGGATGTTacccaacattaaatgtgactataaatcaATTATAAATCAAAAAATACAACTTGTCATTTCAAGTTACTTTTGGTTCAAATTTAGAGCTGTAAATTCATGACGTCTGTTCAAATTCAATTCTTCATGTAAGAccaatcaaataaaaatgtagacatttttttcatttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330151 lncRNA downstream 67393 7796835 ~ 7879017 (-) True G278520
XR_004579997.1 lncRNA downstream 412128 7530784 ~ 7534282 (-) False LOC117599592
XR_004579998.1 lncRNA downstream 412129 7530784 ~ 7534281 (-) False LOC117599592
XR_004579996.1 lncRNA downstream 412129 7530784 ~ 7534281 (-) True LOC117599592
TU329920 lncRNA downstream 450147 7495572 ~ 7496263 (-) True G278312
TU330235 lncRNA upstream 10655 7966819 ~ 7967421 (-) False avpr1ab
TU330636 lncRNA upstream 260849 8217013 ~ 8217293 (-) True G278911
TU330657 lncRNA upstream 282810 8238974 ~ 8239676 (-) True G278920
TU330707 lncRNA upstream 433334 8389498 ~ 8390559 (-) True G278963
TU330836 lncRNA upstream 655954 8612118 ~ 8612342 (-) True G279064
XM_034313096.1 mRNA downstream 9619 7932973 ~ 7936791 (-) False LOC113531950
XM_034313094.1 mRNA downstream 9619 7932973 ~ 7936791 (-) True LOC113531950
XM_034313095.1 mRNA downstream 9619 7933012 ~ 7936791 (-) False LOC113531950
XM_026923000.2 mRNA downstream 21712 7871744 ~ 7924698 (-) True chst11
XM_026922687.2 mRNA upstream 10709 7966873 ~ 7970571 (-) True avpr1ab
XM_026922658.2 mRNA upstream 147310 8103474 ~ 8114786 (-) True c18h12orf66
XM_026922659.2 mRNA upstream 147310 8103474 ~ 8114034 (-) False c18h12orf66
XM_026923834.2 mRNA upstream 265388 8221552 ~ 8226121 (-) False si:ch73-139j3.4
XM_026923833.2 mRNA upstream 265388 8221552 ~ 8226121 (-) True si:ch73-139j3.4
trnal-aag_11 other downstream 352602 7593727 ~ 7593808 (-) True trnal-aag_11
trnam-cau_46 other downstream 1843263 6103076 ~ 6103147 (-) True trnam-cau_46
XR_003403345.2 other downstream 1913217 6033029 ~ 6033193 (-) True LOC113532437
TU329048 other downstream 1954476 5981138 ~ 5991934 (-) False copg2
TU330291 other upstream 96924 8053088 ~ 8068077 (-) True G278634
TU330637 other upstream 262397 8218561 ~ 8219680 (-) True G278912
XR_003403340.2 other upstream 853056 8809220 ~ 8809338 (-) True LOC113532431
TU331209 other upstream 1251187 9207351 ~ 9208563 (-) True G279415
trnay-gua_2 other upstream 1666369 9622533 ~ 9622619 (-) True trnay-gua_2

Expression Profile