RNA id: XM_026922999.2


Basic Information

Item Value
RNA id XM_026922999.2
length 2548
RNA type mRNA
GC content 0.46
exon number 3
gene id chst11
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 7871744 ~ 7924698 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAAACAGATGCTGTTCGACCTGATGAGGATGAGCAGGATTTGCCGGATGGTCCTCGCCACATGTTTGGGATCTTTTATCCTGGTCATCTTTTATTTCCAAAGTATGTTCCAGCCAGTAATGAGACGGAACCCGTTTGCAGCAGAGGGCTGCTGTAGGAGAGGCTCAAGAAATGCGCTGCAGGAGCTTTATAACCCCACACAGGCGGAGTTCTCAAGAGCAGCGCTTCTCCATCAGGCTCGGCGTGACCAGGTGGCCCAGACATGTCGTGCCCACAGTGCCTTGAGCCGCAAGCGACACGTACTGACACCCAGCGACCTAAAACACTTAGTAGTGGATGAAGAACATGAGCTGATCTACTGCTACGTGCCCAAAGTGGCATGCACCAACTGGAAGCGGGTGATGATGGTCCTGAGTGGGCATGGCAAGTACAGCGATCCTATGGAGATCCTCCCCAGTGAGGCACACGTGCCCTCCAACCTGAAGACACTCAACCAGTACAGCATCGCTGACATCAACCACCGCTTGAAGAACTACCTCAAGTTCTTGTTTGTGCGCGAGCCCTTCGAGCGCCTAGTGTCGGCATACCGTAACAAGTTCACACTGCGCTACAACACGTCCTTCCACAAGCGCTACGGCACGCGTATTGTCAGGCGGTACCGCAAAAATGCTACGGCCGAAGCGCTCCAGAATGGCAGTGATGTCAAGTTCACAGAGTTCGCTGAGTACCTCATCGATCCAGCCACGCAACGTGAGGCGCCACTGAACGAGCACTGGCAGACTGTGTATGCGCTGTGTCACCCCTGCCACATCCACTACGACCTGGTGGGCAAGTACGAGACACTGGAGGAGGATGCTGACTACGTGCTGAAGCTGGCTGGTGTGCCTGACTCGCTACATTTTCCATCCTATGCCAAGTCTACTCGCACCACCGACcagatggcagccatgtttttcaaCAACATCAGCGCGCAGCAACAGAGCCAGCTCTATCAGCTTTACAAGATGGACTTCCTGATGTTTAACTACTCCTCACCAAGTTACCTGAAGGAGCAGTAGGAAGGGTTGGCGCACAATGCACGCACATTTTTAAACGCACACCTGTGCAAACACATACTCAAAGCTGAGCTTAACTGAAACAGAACATTGATGTGAGGAGAAATGGCCAGTGAGGTGCTTGATGAATTGGCACCAGTGGAAGCAGAGCAAAAAACTCTGAACTTTTGGAGACTTTTGGAACTGTATAATCCACAGGTGGTCAGTCTGCTGTATTGTGAAGAGGAATGATTAAACAGAGGAAGATTTGTACTGTATTTGATCATGGTTTCATGTTTGATGAGTATTCAGGTAAACCTGGCATCTCTGTGTTAATACACCCGTCCATCAGATTGTAAGATAAAGATCATGTTACTGTTTATATTCCCTGCCATCATTAAGCAATACGACTCTGGGCCACAGGCTCATTTACTGTAACAAGTAAAGATCTCACCCGCCTACCTTCAATTTCAAACACTTGATGAGCGAAAGACTCTTGTGGACTTCTATTACACCCCAATACAGTACTAAAGTTGTGGGCTGTACTTAAGCACGCTCATGTTAGTGTTATTTATGGTTGTTCCCCTAACTACAGCCGTCTTCTATGTGAAGACTGTGTGCGTGTACAGTAATTATATGATGCATATGTAAAGGAGGACCTTTGCGTTCACACAGGAGGATGTGATAATGGCATTGAGAGGTGCCTTTGTGATGTGGGTGTATCCTGCTGCCCTTATGAGTCAGTGGCTATCCGGCATTCAAAAGTCAGAGGTCGGCGAGAGgtcattattcattaaaggGACTCCCAAGAACCATCAGCcatcttaaaaaaatattaagggaatatttcttgtttttgcattgtttttattgACTTATGAAAGGTAGCTGCGAGCAGCTgaacaaaacattatttaaaatactttgtaaaaagaaacaaaagaaagcacgatttaattttttttctctgagtgATGGATTTATAAATGGCAGTAttgatttttaatgtgttttttttttcatgtgcatTATATGGTACAGTGTTGCTGAGCTCTAGAGTGgatcatgtttttaaaaggaaagcaAAGTCTCTGCTTTCTGAGCTGTTCTCATAGGAGCAATTTATTTAGACAGActgagagtcagagagagagagcaaaggagATGAGATGGGAGAAAGTGCTAGACAGTATCTGTTTCCTGCATTAAGCCCATGTTTGTTCCATTGTAGCGTCTCTATCCCAATTTAAGCTCTTCAAAGGAACACATGCTTTCATTTGTAGATGTGTCTTTTTATGGCCCTTTTTTGTTATGACTGTGAATTAGAAGAGtctgaaaatgatgaaattgcCTATTTATGTGTCTGACAGCCACAGACGGGTGTGTCTGTCTCCACCGTCTGTGTCTACACGACTATACAAAAATCCTACACTGGTAAAGGTGACTCAGTCTAACACCAGCTTTCTCTTTCATCCGGATGGCTGGACAGATTAGTGTGCCTAGATAAATAAat

Function

GO:

id name namespace
GO:0007517 muscle organ development biological_process
GO:0030206 chondroitin sulfate biosynthetic process biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0016051 carbohydrate biosynthetic process biological_process
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0047756 chondroitin 4-sulfotransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579997.1 lncRNA downstream 337462 7530784 ~ 7534282 (-) False LOC117599592
XR_004579998.1 lncRNA downstream 337463 7530784 ~ 7534281 (-) False LOC117599592
XR_004579996.1 lncRNA downstream 337463 7530784 ~ 7534281 (-) True LOC117599592
TU329920 lncRNA downstream 375481 7495572 ~ 7496263 (-) True G278312
TU329881 lncRNA downstream 445829 7424842 ~ 7425915 (-) False camk1da
TU330235 lncRNA upstream 42226 7966819 ~ 7967421 (-) False avpr1ab
TU330636 lncRNA upstream 292420 8217013 ~ 8217293 (-) True G278911
TU330657 lncRNA upstream 314381 8238974 ~ 8239676 (-) True G278920
TU330707 lncRNA upstream 464905 8389498 ~ 8390559 (-) True G278963
TU330836 lncRNA upstream 687525 8612118 ~ 8612342 (-) True G279064
XM_026923322.2 mRNA downstream 41606 7826289 ~ 7830138 (-) True c18h12orf45
XM_026923004.2 mRNA downstream 85265 7701032 ~ 7786479 (-) True scube1
XM_026923005.2 mRNA downstream 85266 7701032 ~ 7786478 (-) False scube1
XM_026923401.2 mRNA downstream 181608 7643447 ~ 7690136 (-) True mpped1
XM_026923327.2 mRNA downstream 279704 7580162 ~ 7592040 (-) False pnpla3
XM_034313096.1 mRNA upstream 8380 7932973 ~ 7936791 (-) False LOC113531950
XM_034313094.1 mRNA upstream 8380 7932973 ~ 7936791 (-) True LOC113531950
XM_034313095.1 mRNA upstream 8419 7933012 ~ 7936791 (-) False LOC113531950
XM_034313092.1 mRNA upstream 21817 7946410 ~ 7956609 (-) False hcfc2
XM_034313093.1 mRNA upstream 21817 7946410 ~ 7956190 (-) False hcfc2
trnal-aag_11 other downstream 277936 7593727 ~ 7593808 (-) True trnal-aag_11
trnam-cau_46 other downstream 1768597 6103076 ~ 6103147 (-) True trnam-cau_46
XR_003403345.2 other downstream 1838551 6033029 ~ 6033193 (-) True LOC113532437
TU329048 other downstream 1879810 5981138 ~ 5991934 (-) False copg2
TU330291 other upstream 128495 8053088 ~ 8068077 (-) True G278634
TU330637 other upstream 293968 8218561 ~ 8219680 (-) True G278912
XR_003403340.2 other upstream 884627 8809220 ~ 8809338 (-) True LOC113532431
TU331209 other upstream 1282758 9207351 ~ 9208563 (-) True G279415
trnay-gua_2 other upstream 1697940 9622533 ~ 9622619 (-) True trnay-gua_2

Expression Profile