RNA id: XM_026923007.2


Basic Information

Item Value
RNA id XM_026923007.2
length 1881
RNA type mRNA
GC content 0.52
exon number 10
gene id strap
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 4988481 ~ 5003791 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agcgttagcattagcattagcgaTTTTCCCCGTGTGAAACAGTGGGCAGCGCTGTTCCGGTGTAGCTGCAGCCGGTGGCACAGCACTTTGCACTGGGTGCGCGGCTCTTCGTTAAGCTCTCCGCGTCAGGAAATCCACCTTTAGTGCTCTGTCCTGCCTGGAGAAACCGTTGTCGTGTTGTTTACGTTGCTGTCTGCGTGGACAGGTTTACTCTGGAGAAATGGCTATGAGGCAGACTCCTCTCACATGCTCCGGTCACACCAGGCCTGTTGTGGATCTGGCCTTCAGTGGAATCACTCCTTATGGCTATTTTCTCATCAGTGCTTGTAAAGATGGTAAACCAATGTTGCGCCAGGGAGACACAGGGGACTGGATCGGGACGTTCTTGGGTCACAAAGGTGCTGTTTGGGGCGCCACCTTAAATAAAGAAGCCACGAAGGCAGCTACCGCGGCTGCCGATTTCTCTGCAAAGGTGTGGGACGCAGTCACGGGAGACGAGGTCCTCACCCTGGCGCACAAGCACATTGTCAAATCTGTTAACTTCACGCAGGACAGTAACTGCCTTTTGACCGGAGGAAATGATAAAGTGCTGCGTATTTATGACCTCAGCAAGCCGGAAGCAGAGCCGCGAGAGATCTCGGGCCACACTGCAGCCATTAAGAaagcgctgtggtgtaacagCGACCAGCAGATCCTCTCTGCGGCGGAGGATAAAACCATACGTCTCTGGGACAGAAACACGGGAGAGGTGGTGAAGACGCTGTCGTTCGAGGCGTCCGTGGGCAGCATGGAGTACGTCCCCGACGGCGAGATCCTCGTCATCACCTACGGAAGGACCATCGCCTTCTACAAAGCTCAAACCCTGGACCTGATCAAGACCGTGGACGCTCCGGCCTCCATTCACTCCGCCTCCCTGCATCCTGACAAAGACTTCTTTGTCGCAGGAGGAGACGACTTCAAGCTCTACAAATACGACTACACCACCAAGGAGGAAATGGAGTCGTATAAGGGTCACTTCGGGCCTGTGCACTGTGTGCGCTTCAGTCCTGACGGAGAGCTGTACGCCAGCGGCTCTGAGGACGGGACGCTGCGCCTGTGGCAGACTGCCGTAGGGAAAACGTACGGACTGTGGAAGTGCGTGCTGCCCGAGGAGCTGTCTTCGGAGAACTCAGACGCTCTGTACTGCCCTCCGGCTGAGATCAAGGCCTGAGGCGTGGACCGGGACGAGCGAGCGGCGAGCAGAAGAGAGGAGAGGTCCAGGACCGGTCCAGATCAGATCCCCTGCAGAGTGCTGTGCCACCTCAATCTCCATCATCtagtaaaaaatacataatcgAGAAACAACAAACGGCCCGCGGAGCTGAGCTTAACACGGGGGAGTGCGGGGAAATCCAGCAGCGCGTCACGCTACACGACCCAGACCACGCACCAGGAGGCAGTAGTAGAGATGGGAGTGCTCGCGTTCCGACTCCCAGCTGCCTGCTCGCTCTCTGATGCTGTTCAACACCATCCGGCTCCTCCACCGCGCTGCGATCAGTTACTTCACTTTCATTATTGTatcgtttttttgttttgttattgttttttttttcccagaatatGTAAAATTTGtgcttttaaacaaacaaaaagaaaaaagggataCACAGTGTTTCTATTCAGTTTATTGATCTCAGTGACGGTGATCCTGAGGCGTTACGTCACATGTGGTGTCTTGGTGTATTATAATCACCCGTTGAGGACGTCAATTTTGGGGTGTTTTTTGAAAAGTAACAAGTAAaactgacttaaaaaaaaaagtgacttaaGTTCTTGACTATGGTTTTTCTTTGCAACATGCGAGCTGTAATGTGTGGTCAATAAAACGTTAATGAGATACCA

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0016301 kinase activity molecular_function

KEGG:

id description
K13137 STRAP, UNRIP; serine-threonine kinase receptor-associated protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403297.2 lncRNA downstream 43203 4943549 ~ 4945278 (-) True LOC113531850
TU328123 lncRNA downstream 107473 4880418 ~ 4881008 (-) True G276753
TU328138 lncRNA downstream 111689 4817108 ~ 4876792 (-) False G276761
TU328142 lncRNA downstream 126374 4817108 ~ 4862107 (-) True G276761
TU328136 lncRNA downstream 146727 4817108 ~ 4841754 (-) False G276761
TU328390 lncRNA upstream 103089 5106880 ~ 5110968 (-) True G276980
TU328395 lncRNA upstream 120682 5124473 ~ 5125478 (-) True G276985
XR_004579974.1 lncRNA upstream 312116 5315907 ~ 5326714 (-) True LOC117599571
TU328476 lncRNA upstream 352109 5355900 ~ 5358204 (-) True G277065
TU328477 lncRNA upstream 354660 5358451 ~ 5359228 (-) True G277066
XM_026923411.2 mRNA downstream 4180 4966232 ~ 4984301 (-) True tmpoa
XM_034313267.1 mRNA downstream 23388 4954291 ~ 4965093 (-) False slc25a3a
XM_034313265.1 mRNA downstream 23388 4954291 ~ 4965093 (-) True slc25a3a
XM_026922781.2 mRNA downstream 49668 4925716 ~ 4938813 (-) True ldhba
XM_026922701.2 mRNA downstream 70701 4897270 ~ 4917780 (-) True gys2
XM_026923349.2 mRNA upstream 77021 5080812 ~ 5315907 (-) False sox5
XM_026923347.2 mRNA upstream 77021 5080812 ~ 5315907 (-) False sox5
XM_026923346.2 mRNA upstream 77021 5080812 ~ 5188515 (-) False sox5
XM_026923350.2 mRNA upstream 77021 5080812 ~ 5188515 (-) False sox5
XM_026923345.2 mRNA upstream 77021 5080812 ~ 5188515 (-) True sox5
XR_004579951.1 other downstream 4166 4968253 ~ 4984315 (-) False tmpoa
TU328176 other downstream 16236 4970314 ~ 4972245 (-) False tmpoa
TU327987 other downstream 249482 4734931 ~ 4738999 (-) True G276650
LOC117599580 other downstream 401489 4586256 ~ 4586992 (-) True LOC117599580
LOC117599581 other downstream 411443 4576470 ~ 4577038 (-) True LOC117599581
TU329048 other upstream 977347 5981138 ~ 5991934 (-) False copg2
TU329042 other upstream 978501 5982292 ~ 5984564 (-) True G277575
XR_003403345.2 other upstream 1029238 6033029 ~ 6033193 (-) True LOC113532437
trnam-cau_46 other upstream 1099285 6103076 ~ 6103147 (-) True trnam-cau_46
trnal-aag_11 other upstream 2589936 7593727 ~ 7593808 (-) True trnal-aag_11

Expression Profile