RNA id: XM_026923050.2


Basic Information

Item Value
RNA id XM_026923050.2
length 5918
RNA type mRNA
GC content 0.44
exon number 18
gene id scyl2
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 13276926 ~ 13304279 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAAgccatttgggacacagcctgaGTGTTTCCAGCTTCACAGAATGACTGTTCACGGCTTGTTTTGATGTAACTGAGCAAGGCTGCTTTTTCGGGCGCAGTTGATATTtctactaattaattaatatatctATTAATTCATCGAAAGCGGAAATCATTTCGCTGTCACCTGATAACGGATAAAGGGTTGACAGCCAAGTAAACCATGGAGTCCATGCTCAATAAGTTAAAGAGCACTGTTACCAAGGTGACGGCTGACGTCACCAGTGCTGTGATGGGAAACCCTGTGACGCGGGAGTTTGAAGTCGGCCGCCACATTGCCAGCGGAGGACCGGGGATGAGCTGGAGAATCTACAATGGCACAAAGAAGTCTACCAAGCAGGAAGTAGCAGTCTTTGTATTTGATAAGAAGATTATTGACAGATATCAGAAGTTTGAGAAGGACCAGATCATCGATTCGCTCAAACGAGGAGTTCAGCAGTTAACACGCTTACGACACCCACGCCTTCTCACAGTTCAGCATCCTTTAGAGGAGTcaaggGACTGTCTGGCCTTCTGCACAGAGCCTGTGTTTGCTAGCTTGGCTAATGTGCTGGGCCAGTGGGACAATCTGCCTAGTCCTGTTCCCACAGACATCAAAGAGCACAAACTCTTCGACGTGGAGACAAAGTATGGCTTACTACAGATATCTGAGGGCCTGTCCTTCCTGCACAGTGGGGTGAAGATGGTGCACGGTAACCTGTGTCCAGAGAACATCATCCTGAATAAGAGTGGAGCTTGGAAAATCATGGGCTTCGATTTCAGCATTTCTTCCAGCAACCCGTCAGATGCAGAGcccaaatatgtatgtaaagagTGGGATCCCAATCTGCCCCCTCTCTGCCTGCCTAATCCGGAATACTTGGCTCCAGAGTACATCCTGTCTGTCAGCTGTGACTCCGTCTCTGACATGTACTCCCTGGGCGTGATCATGCATGCAGTCTTCAACGAGGGGAAGCCAGTGTTCCAGGTCAATAAGCAGGATATTTTCAAGAGTTTCAGCAGGCAACTAGACCAGTTGAGTCGTCTGAGTCCAGGAGTGCTGAGTAAGATCCCAGAGGAAGTGCGGGAGCATGTGAAGATGCTGCTGAGCGTCACAGCCAACGTCAGACCAGATGCAGACCAGATGACGAAGATCCCGTTCTTTGACGATGTGGGCGCCGTGACGCTACAGTATTTCGACTCGTTGTTCCAGAGAGACAATTTACAGAAGTCACAGTTCTACAAAGGACTTCCTAAAATCCTTCCCAAGCTGCCCAAGAGAGTGATAGTGTACCGGATCCTTCCAGCCCTCACCTCTGAGTTTGTGAATCCAGACATGGTACCGTTTGTGTTGCCCAACGTGCTGCTCATAGCAGAAGAGTGCACCAAAGAAGAGTATGTGCGTCTGATCCTACCAGACCTCACCCCAGTGTTCAAACAGCAAGAACCCATTCAGATTCTGCTAATATTCTTACAAAAGATGGACCTGCTTCTGACCAAGACGCCCTCCGAGGACATCAAAAACAGTGTGCTCCCTATGGTTTACAGAGCACTAGAAGCTCCCTCTACTCAAATCCAGGAGTTGTGCCTGAATATTATCCCCACCTTTGCCAACCTGATTGACTATCCATCCATGAAGAACGCGCTTATTCCTCGTATCAGATCGGCTTGTTTACAGACTTCCTCTCTGGCTGTGAGGGTGAACTCCTTGGTGTGTCTTGGGAAGATTCTGGAGTATCTAGATAAGTGGTTTGTCATCGACGAGATCCTGCCATTCTTACAGCAGATACCCTCCCGTGAGCCTGCTGTACTCATGGGCATTCTGGGCATCTATAAGTGCACATTTACCCATAAGAAGCTAGGCATCCCAAAAGAGCACCTTGCAGGAAAAAGTCTGCCTCATCTGGTCTCCCTTAGTATCGACAACAACCTTAATCTCAACCAGtttaaCTCTTTCATGGCCGTGATCAGAGATATGCTGAGTCGGATGGAGGCAGAGCACAAGACCAAGCTGGAGCAGCTCCACAGCATGCAGGAGCAGCAAAGGAGCCTTAACCTCAACCAAATAAATCCATCAGAAGAGACAAAGAGCAACCCCAGTCCACCCAGTCAAGTTCGAGATaTTGATGACATCTTTGGTGGGAGTTCAGTAAGCGCAGGAGTGAACGGCAAAGAGAACGGCTCCTCCACTGCCCCCTCCCAGCCCTCGAGAgtGTCTCTGACTCTGGAGGAGAAGCAGCGCTTGGCTAAGGAGCAGGAGCAAGCAGCCAAACTGAGGAACCAGCAGCCTCTGGCCCCACAGAGCATTAAAACTGCTACAACATCCACAACGACACAGgCAAAAGACCTGACCAGCAGTCTCCTGAACAACATGACCTCGCTGAACAGCCTCTCTCTGAGCTCTGGCTCTCGCACAGCACCCATGCAGACTGGTGCACTCTCATCTGGCTTCTCCTCTACACCCACTGTGGCTGGCATGGGCACCATGGCCCCCATCAGCAATGGGTTCAACTCTCCCATGGGTTTCCAAACAGGAGGCATGGGCATGAGGCCTGCTGCGCCCGGCCTCTACGGAGGCATGGCCGGCACCAACAGTACACCGAATTTCAGTGCCCTCtcacagaatcagaatcagtccAGCAAGCCGCCTGACATGTCCTCCCTGGACTCTCTGTTCTCAGCTAGCAAGCCCAAAGTCAGCCTCAACCAAATGGTCTCCAAACCAGCTGCAGGCATCACACCCTCCCCCTGGATCAACCAGTTTGGTACAGGCCAGTCCTCTCAGACTGCACCCATGCAAGCAGTACCGATGGGGGTGCAGGGAGGGTTCGGAATGCAGGCTAACCCTTTCTTCAGCCCCCAGAACTTCTCTCAGCCTGCTGCTGCTCCCCCCACCATGAATACAGGCGTAAAACAGAGCATGTCGGTCAATAACGATCTGAAAGACCTCTTCGGTTAAAACGCTTCTTGTTTCCATCTGCTTAGTGAGAGGAAGGTTAAAGGAGATGAATCAAGACAGaccattgttttgttttgttttgtttattgtgcTGGACCTTGCAGTCAATCAGAGGAAGACCACCAGCCTTAACCATGCAGGGTCACATGTCACACTAGTCTTACAAGTTGCACATGTTTTACTGTTATCCCCATCCGAATACTGCCCGCTAGGCATAAGTGTTCCTTTGGTTTGATctctaatctcacacacacacacacacacacacacacacacgtacacacgtacacatacacatgaagGCTGAATTTTCCCGAAATGAGGAGAAGGCATGGATAAAGCAATGGTGGTGCTTCTGTGCTTCACCTGGTGAAGAAGCCAGTTTACTTGAATAGGAAATGGTGCAGGAATTTGCTTTTTACTAACTTCACACCAACTTCTTGGTAGACTTTTGGAAGAGCGAGCAAATGGAAAACATGAGTGGGCTATGGTCTCTTCTTCCTTAAAAGTAATAGATGGCCTGCTGATTATTTTGTAGCTTTCACAACAGACTTCCACGTTGTTGCTCACAGTCGCTAGCTAGCGAATGTTACCAGTATGTTCCTTTATAAAGTAACACCACACCAGGACTTCTGATCTAAATTTAGCTCTGTCCTGACAAAGAAAAATGCGAAGCAAATATCTGGTGTAGTTTCTGCTAAAATAGAATATTAATTTACTTCGTGACCCTTTATTGCGAGGTTCAGGGTCATACATTAGTTCAATTTTGCACCATTTTATTGTTCCATGctttttatcttatcttaacaCTCACTGCGCTGAGTTCAGCAGCATTTGATGCCCAAACATTCAACTGAATTTCAGGCGAGTTGACTGAATTGACGATCCGTTGGTTTTCAATTAgatttaaaagtcatttttgtGTAAGAACAGTTCAGTGAAATTCAGTGCTCTAAACAGCAATTTGATTAAGAAGTGGATTGTGGATCAAAATGGATTCTAATGCATTAAACATTTTCTCCCGTGGCCCTCCCTCGTATTTCTATTACCGATAGGCATCACTTAATAAATCACAAATCATtagatttttaacatttaaaatcaaattgtGACCGATGCATTTGATTcgatattgttttatttctttttaatatggATGCTGTTGCATCCTGACAAATATTAATCAATGCATCAAGGAAATTCTAGTTTTTTGTCCCCATTTTCAATACAGTATTGATAACTGAGCTTGATACATAATGCAGTGATACATACGCAAAACACTGATTTGATATTGACATTTCCCAGTTGTAGAGGAGGCTGTTTGTAAGGTGGAATAATGCTTCGACATTGCGTACAAATAGGGAAAATTGTTGCTTGAAGTCATGTGCTTTCATGgcatatatatatgatatatatcatAAGTGAATGATTGGGTTCATTCTGATACAAATCCACAGTTTCAGGTTAGCATCAGAATGGTATCAATATTCAGTGTAGGATCAGTGCGTCACATCTCACCTCACTTTTCCCGCAAGTGTTGGTGGAGgagtaaataaatcacaaatctGGTTTGCGCTAGCGATGTACGTCCAGACCAGCTGTTCAGATTTGAATCGTAGTATTTCAGGAAATGACCACACTGGTGCGGATGAACTGTTTATACCATGCTGTGTAAATGTGGTCCTGACAAAGGATGATAAGTGTGAGGATctgaatgtttgtatttttacatgtaTGCTGGAGTTATGATGAACTAACAGTGTGCTGGGTTGGGATGGAGTGTAATGGAGCAAATTCTTGCTGATGGTGACAGAAGCATATGGAAGCAGGTTGAGTACTTGGAGAAATTCTTGGACCTAGAGATCAGGAAAGATTTCTCCATGGGTATAAATTGGAATCTGACCACTTAGAAAGCTGCAAGACTTCATTGAAATGTGGTGTCAGTGTAGGTTTGGTTTGTGTCTGGCTTTGTGTTTGtccagctgctgctgtttgtgTGAGTAATTTCTGTTTAGTGTTTGCGTTTCTCGTTACTGATTGTTTTCACTGGAGCCCACGTGATGGTAGCATTGACACTGAGCGGAttcaaatgcttaaaaattctttttaaaatcacacataGACCAACCTAACCTTTTATTCTTTATCATGACCAAATAGATATCATGACtgtgtattatatttacatatcatTTGAATGAAGTGTATAGTAAACTGAGATTTATTTGACATTGgttaagaggttttttttttttttttaatatattgtctTGGGATCACTTTCATAAAGGGGACCTCTGagtataaatgtacaaaagaaaGAAGCCTTATGAAGAGAGGTGTGCAATAATAGGTCTTGTAAGGGTTTTGTAAAATTGGCTTGAAGTCAATGCGTGTTTTATCACATACGATTTTCATATATGGACAGTATCGAATCTATATAATACACCCACATGTCCTTAAAGTTTCCAGTTTATTCCAGTTATTTTAGATATAGGCTGAAAGTAAGTCCATGAACTTGAACAGAATCAtagaaaatatttgtatttcatCCATTTCCTTTTGAACTGTCCATTGCTCTGTCATGATCTGGTTTCAGTTGCCAATAAGTAATTTGACCTCTGAAtcaaagattaaaaacagaaacaaagccTATTCTTCTATCTTTATATTATACTAATGTAATATGTGTACAGTGTGGCACTTTTGTGATCTTTGTATCGTGTTACGAGATTGTACTGTCTGAAGTTGACAATTTGAtgaaaatctgtaaatatttctcaaaatacACACGCTGATGTTCTCTTTGAAGCTTTTCAGTCATTTTGTCAAACAGATTTGATTGTGTAGATTCTTAATTGCAGTGTATAGTTTTGGACAGAAAATAGATTTGAAGAATAACCAGAAAGTTTAAATAAAGATCTTCAAACAACGAGAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU334183 lncRNA downstream 66433 13168675 ~ 13210493 (-) True G281964
XR_003403338.2 lncRNA downstream 129568 13146282 ~ 13147358 (-) True LOC113532391
TU333645 lncRNA downstream 799297 12476264 ~ 12477629 (-) True G281527
TU333624 lncRNA downstream 817834 12457563 ~ 12459092 (-) True G281510
TU333597 lncRNA downstream 907661 12368959 ~ 12369265 (-) True G281486
TU334236 lncRNA upstream 17668 13320173 ~ 13373048 (-) False G282006
TU334237 lncRNA upstream 17668 13320173 ~ 13321414 (-) True G282006
TU334285 lncRNA upstream 105108 13407613 ~ 13409326 (-) True G282047
TU334298 lncRNA upstream 125152 13427657 ~ 13427872 (-) True G282060
TU334376 lncRNA upstream 256754 13559259 ~ 13563946 (-) True G282116
XM_026922632.2 mRNA downstream 78001 13188862 ~ 13198925 (-) True tnni1d
XM_026922677.2 mRNA downstream 166712 12962716 ~ 13110214 (-) True LOC113531778
XM_034313323.1 mRNA downstream 457220 12809321 ~ 12819706 (-) True prl2
XM_034313229.1 mRNA downstream 473874 12787882 ~ 12803052 (-) False nuak1a
XM_026923473.2 mRNA upstream 1949 13304454 ~ 13310263 (-) True depdc4
XM_026922690.2 mRNA upstream 22896 13325401 ~ 13338373 (-) True metap2a
XM_034313097.1 mRNA upstream 42239 13344744 ~ 13374285 (-) False vezt
XM_026923174.2 mRNA upstream 42239 13344744 ~ 13364503 (-) False vezt
XM_026923173.2 mRNA upstream 42239 13344744 ~ 13364503 (-) True vezt
XR_003403346.2 other downstream 695863 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 1616599 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 1688902 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 2017534 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 2269783 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU335292 other upstream 1871843 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 3656019 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 3801060 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 4676280 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 4676280 17978785 ~ 17980246 (-) False LOC113532261

Expression Profile