RNA id: XM_026923051.2


Basic Information

Item Value
RNA id XM_026923051.2
length 2421
RNA type mRNA
GC content 0.49
exon number 13
gene id cerk
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 15756306 ~ 15778944 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCGCGGTGACGCAGGTGAGTCTTTGCTTTTCGTTTTATTCTTAGAGGAAGCAGAAACCGCTATGCGTGGACAGCGCGGAGGACTGCGAGCGCTCTAACCGAGCCTGCGGCTTTGAGTAGCTTGTTAAGTTCGTTCCCAAGATGAAATTCAGATAACTAGGGTTTACAGTGGGCCGTGGCTGCGGCTGGAAGAGTGTGTTCACGGAGAAATGCAGGAAAAGCAGCCGAAGCCGCCGCTGCTGCTGTTGTCCTCGCAGCTCAGCCTCCAAAACCGGGGCTATGAGGTGACCCTCAACAGCGCTTTTCTCTCCTGGAAGGAGGTAGAGACGAGACAAAAACGGACTGCTGCCAACATTTATGGTCCTCTGAAGGCTGcaggCAGCCACTACGTGCCAGTGTGTGAGATCATATCCGTCCAGGAGACGGAGGAAGACTGCCCGAGCACAGGCATAGGAAAGTGGCAGAAAGTTCCACAAAGTCTAGCTGAATCTAACCAGTATGCTTTCACAGTGTCCTATGTGGAGAGGACTCAGAAACACCGCTGGCGGTGCAGTGAAGTCACCCTCCATTGCACTGATAGAACACTGTGTCTGCAATGGGTCCAAGCCATCAGGGAGCAGCTCTCACTATTGACTATCCGCCCGAAGCGCTTGCTGGTCTACATAAATCCCTATGGAGGGAAGCACCGTGGGAAAAGGATTTATGAGCAGAAAGTAGCCCCAATTTTTTCCCGTGCCTCTATTTCCACTGACGTGATTGTTACAGAGCGGGCGAATCATGCCAGGGACCACTTGAAAATGGAGGCTGATCTAAAGAAATACGACGGGGTGGTTTGTGTTGGAGGAGATGGCATGTTTAGTGAAATCATACATGGCCTAATCTCCCGTACGCAGTGTGACTCCGGTGTAGACCAGAACCGTGCAGACGAGACTCTGATACCTTGCAGCCTTCGTATCGGCATCATTCCTGCAGGTTCGACTGACTGCATATGCTACGCAACGGTCGGCTCTAATGACCCCGTGACCTCAGCTCTGCACATCGTTGTGGGAGATTCCCAGCCAATGGACGTCTGCTCCATCCACCATAACAACACCTTTCTCCGCTACTCTGTCTCACTGCTTGGTTACGGTTTCTATGGCGACGTACTGACTGACAGCGAGAGGAAGCGTTGGATGGGCCCAGCTCGCTACGACATCTCAGGTGTTAAAACGTTTCTGTCACATCGCTATTATGAAGGGACGATCTCTTTCCTCCCTGCTGATGAGAACGTAGGAACTCCGCGTGACAAGCTGCAGTGCCGATCTGGGTGTAATATCTGCAGGCTACCTTCAGCAGACAAGCAGGTTTCCAAAGATGAGGAGAGCATCTCAGATACCGagaaaaaaggagTGTGGCAGGTCATCAGGGGAAAGTTTTTGGCCATCAATGCTGCATGTATGAGCTGTGCTTGTCCTCGCAGTCCCAAAGGCCTGTCTCCTGCTGCACACCTGGCCGATGGCACAGCTGACCTCATCCTGGTGCGCAAGTGCTCACGATTTGATTTCCTGCGCCACCTGCTGCGTCACACCAACAAAGACGACCAGTTTGACCACCCGTTTGTGGAGGTGTACCGTGTGCGACAGTTCCGCTTCACGCCCCGGTACGAGGATACTGACTCTGAGCTGGAGCTGCGGGAGGCTGAGGGCTCTGGTCGTAAACGCTTCTTCAGCCAGATATGCAGAGAGCATCCGGCATGCACTTGCAGCCTGGCGCACAGCAGCTGGAACTGTGATGGAGAAATCCTGCCTCATGCTGCCATTCAAGTCAGAGTGCACTGCCAGTTGATCAAGCTGTTTGCGAGAGGGATTGAAGAGCAGTCCGTCTTTGAGGAACCTTACACTCTCAGTGCAATATAGTGCTGCCTGtcactggaaagaaaaaaaattaacttgcTGGACCATGAAGAATCCCCGACCGTTAGGTTCACATTTGGGTTAACAAGATGCTATTACAAGTTCCATTGcacatccatttatagtttttgCTGGAAGTGATGTCATTAGTTTGCTAGTATGCACCATGGTTGAATAGATAGCATCTAGCTGACTATTTATTGATCACTGATAATCACAATGGCAAAGGCTCAGATGGGTTAAACCTGTATCCCCACAgtattgatatttttttaacacattccTTCTTTTACAGTGACTAAATTATTGCTAATTATTTCTCTTACCCCACCCAACATGTTCTAAGTTTAACTGTGGAGCAtgatttctgtctgtcttcctctaTTGTCAAGCTGGCCTTGATGTTTCGGACAGTAGTATCCCAAAGTTTGAAcataatgtgcaaatattttctttactgAAAATGAAGTACTCAACATTATCCTGTCGTAGTTGCTGttattaaacataatatattTAGTTACTTCAA

Function

GO:

id name namespace
GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway biological_process
GO:0008152 metabolic process biological_process
GO:0003951 NAD+ kinase activity molecular_function
GO:0004143 diacylglycerol kinase activity molecular_function

KEGG:

id description
K04715 CERK; ceramide kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU335610 lncRNA downstream 1701 15754317 ~ 15754605 (-) True G283218
TU335461 lncRNA downstream 234616 15517224 ~ 15521690 (-) True G283081
TU335389 lncRNA downstream 366205 15387948 ~ 15390101 (-) True G283022
TU335356 lncRNA downstream 402865 15350706 ~ 15353441 (-) True G282999
TU335298 lncRNA downstream 485106 15270994 ~ 15271200 (-) True G282950
TU335704 lncRNA upstream 263420 16042362 ~ 16042579 (-) True G283307
XR_004579867.1 lncRNA upstream 299826 16078768 ~ 16082121 (-) True LOC117599449
TU335902 lncRNA upstream 460573 16239515 ~ 16239901 (-) True G283503
XR_003403336.2 lncRNA upstream 515938 16294880 ~ 16296190 (-) True LOC113532372
TU335937 lncRNA upstream 621979 16400921 ~ 16401948 (-) False alg12
XM_026923836.2 mRNA downstream 192590 15554273 ~ 15563716 (-) False srr
XM_034313341.1 mRNA downstream 194620 15554273 ~ 15561686 (-) True srr
XM_026923726.2 mRNA downstream 211423 15539057 ~ 15544883 (-) True alg10
XM_034313283.1 mRNA downstream 419373 15325373 ~ 15336933 (-) False LOC113532250
XM_034313343.1 mRNA upstream 590727 16369669 ~ 16389481 (-) True brd1a
XM_034313344.1 mRNA upstream 622265 16401207 ~ 16406863 (-) True alg12
XM_026922599.2 mRNA upstream 670844 16449786 ~ 16452939 (-) True LOC113531729
XM_026922749.2 mRNA upstream 789753 16568695 ~ 16581436 (-) True il17rel
XM_026922863.2 mRNA upstream 843161 16622103 ~ 16647682 (-) False LOC113531895
TU335292 other downstream 578693 15174348 ~ 15177613 (-) False LOC113531972
XR_003403346.2 other downstream 3175243 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 4095979 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 4168282 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 4496914 11238935 ~ 11259392 (-) True vegfab
TU336422 other upstream 1179582 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 1324623 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 2199843 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 2199843 17978785 ~ 17980246 (-) False LOC113532261
XR_004580005.1 other upstream 2291805 18070747 ~ 18082361 (-) False tmem209

Expression Profile