RNA id: XM_026923052.2


Basic Information

Item Value
RNA id XM_026923052.2
length 3088
RNA type mRNA
GC content 0.47
exon number 8
gene id adipor2
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 6879529 ~ 6919689 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGAGGAGTCAGTTGACAGAGCCGCGGTCGGTGCGAGAGCTGCGGAGTGAGGACACAATTTACCCGAGTCGCGGCAACTCTGTGACAAAAACACTTAAAGAGCAGCTTCTGACTCCCGGCTTTGGAGGTTCTCTGGTCCCCCGTGGCGCATCGGTAGCGAGAGGCGACAGTTTGGACAAAATCATCCTGGTGTCGAACAGCAGTACGAGAGAGAGGAGAAACTCCAGGAGACAAGCTGGACGGAGCGGAGCTGAGGGAGAAGGGCGAAAGCCCAGCATTCGTCCTGAGACACAGAGTGTGCAACACCAACAGCGCCAGCACCAGCAACTCCACCTCAGACAGCCAGGACACCATGAGCTCAGGCAGCTCCAAGTCAGACTGTACACAGAACGAGACTGCGGCCATTAGAAGAACGGTACACCATGAAGGAGACAAGAGAACAGaggcagaggaagaggaggagaggagctCGGATGAAGGCTTTATGGGGATGACGCCACTGCTGCAGGCCCACCACGCTATGGAAAAGATGGAGGAGTTTGTCCATAAGATGTGGGAAGGCCGGTGGCGTGTCATCCCTCACGACGTGCTGCCTGATTGGCTGAAGGACAACGACTTCCTCCTGCATGGACACAGGCCACCGATGCCATCCTTCAGAGCGTGCTTCAAGAGCATCTTCAGAATCCACACAGAGACGGGCAACATCTGGACTCACCTTCTCGgttgcctgttcttcctgtgtctggGGATCGTGTACATGTTCAGACCCAACATGTCGTTTGTGGCGCCGTTTCAGGAGAAGATCGTGATTGGCGCGTTCTTCTTGGGAGCGATCCTCTGCCTGTCCTTCTCCTGGCTCTTCCACACAGTCTACTGCCATTCAGAGGGCGTCTCTCGGATATTCTCAAAGTTGGACTACTCAGGCATCGCGTTCCTGATCATGGGTAGTTTTGTGCCGTGGCTTTACTACTCCTTCTACTGCTCCCCTCAGCCCTGTGTTGTTTACCTGATCGTGGTGTGTATCCTGGGCCTCGCCGCCATCACTGTCTCCCAGTGTGACTTCTTCGCCACGCCGCAGTACCGAGGAGTAAGAGCTGgtgtgtttgtgggcCTGGGCCTGAGTGGAGTTGTGCCCACATTACACTTCGTAATCTCTGAGGGCTTCCTCAGGGCCACCACTATCGGTCAGATGGGCTGGCTCTTCCTCATGGCCGCCCTTTACATCACCGGAGCCTGCCTTTACGCTGCGCGCATCCCTGAGAGATTCTTCCCCGGCAAATGTGACATCTGGTTCCACTCGCACCAGCTGTTCCACATCTTGGTGGTTGCGGGAGCGTTCGTGCACTTCCACGGCGTGTGCAACCTGCAGGAGTTCCGCTACACGGTGGGAGCCGGCTGTACCGCGGACGGCGCTCTGTGAGACCCCGCTGCACCACCAGGGGGAGACAGCGCTCTCCTTTTATTACCACCACCGCCAGTaacacctcctcctctctcaACTGTCTCACTCCACTACAGAGGGCTGAACAagatcttttcttttgtttgttttcccctaattccttctctcctcctcttctgccctctttaaaaaaaaaacctatgatGTGATTCAGTGGAGCTCGAGGGTGGACCAATTCTGAAATACTGATTTACAGAATTGTTTTTGAGGTCTGTAAACAATATGACTTCATGCTGTTTGCATATTAACTgggttgggggaaaaaaaaaaaaggtgtggaAGTTTGCCTTTAAAGGTGCAAATGGTTTTAACTGTTATAAacgttattattaatgtaaataagaTTTCTAAACCTGGGTTATATAGATttttacaaatgttaaataataataataataataattaaaaaaaaaaaaaaaaacaacattatagTATTGTTAAATTGAGCGGAAAAGATTGAAAAGATGCAATCGGTGCATCGATTAGGATCATGGAGTCGGCAAATTAACTGTGCACTTCTGAACCAAAAATAATAAGAGGGTGAAAATAAGAAACGTGACTAAAGGACCGGAGAGAAACAAGATTTTGGATTGAGCTGAATGAAGCAATATTCGCTGCTTCACATGAAAGTGCACAGCCAAGGTTTGTCTCTGAGGCTGTACCAGTGTGTATCTTTGGCTCGCTGAGTCAGAAGTCCACAAGAAGCCATTGTGAGAGTTTTTCTGGCAAAGCCATAATCCTGACAGGCGCCAGGTCCAACAACTGGCCTTAAGATATCGTTTTCAGCCTCCTTTTTTTCACACAAGGAATTTCTGCTTCTCTACTTGGATGATAGCACCTCGGATCACACGTTTGTTTTTTATGGGATGTTGAAGAAGATGCTGAGAtgcgtctctgtgtgtttaagcGCACGTTTTATTTCATTGCTATGATGCGCTGCTTGTTGCTTCATTTAATTTTGCAGTCTGTTCGGTTGGgacacttcttcttcttttttttttttgcattacaaTGCAGgaaaagctttatttttgtttcaagCTTTTTGCTCGCCTTTTCCAGAGGGCTTATGGATCATGTGTTACAGATCCATGAACACATCACACTGTGTTTCATCTGTGTAAGAGTATTACTACAGTCTGCTCACATCAACATGAGGCAAACCCACTTCGTAGGACGTTTTATAAGATCAAGGGCCGGAACGGAGGCATGCCACAGCCACCGTCCGTTTCATAAACGCTGCCTTACACGTCAGCTCGTGTTGAAAAGAGGCAACTCGGGGATCAACGTCAACGTCTTGGAACTTCGATACAGGATAAACCTGTAGACTGCACATTCATCCGTCTGTAAAAGACTTTGACAGTGTTATCGGTGTAAACTGTCGACCGCTGTGGGCCCTGACTTCACCACCAACACAAGGCCTTGATTCGCTGCATTATatgtttaattcatttctgATGAGgttgatttccttttttttttggtcactattctttttaatattaatttattattgatttgtGAGAGGTGCATACTATTTCTCGTTGAAGCACACAAAGTTCCGAGTGTCTGCAGTAGAGCCTTTATATCTGCTGTATTGttctaataaaatgtttttgaatcctT

Function

GO: NA

KEGG:

id description
K07297 ADIPOR; adiponectin receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU329813 lncRNA downstream 588 6877752 ~ 6878941 (-) True G278225
TU329377 lncRNA downstream 88054 6791262 ~ 6791475 (-) True G277881
TU329374 lncRNA downstream 92058 6783659 ~ 6787471 (-) True G277878
TU329033 lncRNA downstream 882137 5960674 ~ 5997392 (-) True G277567
TU329051 lncRNA downstream 891185 5978950 ~ 5988344 (-) True G277577
TU329864 lncRNA upstream 152057 7071746 ~ 7074585 (-) True G278265
TU329874 lncRNA upstream 309316 7229005 ~ 7229440 (-) True G278275
XR_004579863.1 lncRNA upstream 494659 7414348 ~ 7416071 (-) True LOC117599447
TU329881 lncRNA upstream 505153 7424842 ~ 7425915 (-) False camk1da
TU329920 lncRNA upstream 575883 7495572 ~ 7496263 (-) True G278312
XM_026923319.2 mRNA downstream 9916 6863931 ~ 6869613 (-) True nudt5
XM_034313329.1 mRNA downstream 10155 6863931 ~ 6869374 (-) False nudt5
XM_026922679.2 mRNA downstream 17502 6845898 ~ 6862027 (-) True tspan33a
XM_026923413.2 mRNA downstream 37505 6828753 ~ 6842024 (-) True smo
XM_026923361.2 mRNA downstream 52350 6808801 ~ 6827179 (-) True cax1
XM_026922858.2 mRNA upstream 7079 6926768 ~ 7035028 (-) True wnt5b
XM_034313127.1 mRNA upstream 7079 6926768 ~ 7000578 (-) False wnt5b
XM_034313129.1 mRNA upstream 7079 6926768 ~ 6945968 (-) False wnt5b
XM_026923054.2 mRNA upstream 123728 7043417 ~ 7244470 (-) True erc1b
XM_026923457.2 mRNA upstream 329177 7248866 ~ 7254644 (-) True ninj2
trnam-cau_46 other downstream 776382 6103076 ~ 6103147 (-) True trnam-cau_46
XR_003403345.2 other downstream 846336 6033029 ~ 6033193 (-) True LOC113532437
TU329048 other downstream 887595 5981138 ~ 5991934 (-) False copg2
TU329042 other downstream 894965 5982292 ~ 5984564 (-) True G277575
TU328176 other downstream 1907284 4970314 ~ 4972245 (-) False tmpoa
trnal-aag_11 other upstream 674038 7593727 ~ 7593808 (-) True trnal-aag_11
TU330291 other upstream 1133399 8053088 ~ 8068077 (-) True G278634
TU330637 other upstream 1298872 8218561 ~ 8219680 (-) True G278912
XR_003403340.2 other upstream 1889531 8809220 ~ 8809338 (-) True LOC113532431
TU331209 other upstream 2287662 9207351 ~ 9208563 (-) True G279415

Expression Profile