RNA id: XM_034313232.1


Basic Information

Item Value
RNA id XM_034313232.1
length 3013
RNA type mRNA
GC content 0.40
exon number 11
gene id mapk11
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 12375791 ~ 12394521 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCACACACCACCAGACGGAGCCTCCCATTCTGGTAAACTGCGAGCACAAACAGAGGCGCTGGGCTATTTCATCTGTGCAGACTGTGTAGTCGAAAAGGCGAATATTGCAGCTGAAAACAGGACAGCCTTTTCTGGGTTTATTAGTGATCATGTCAGCCAGACCGGGATTCTATCGCCAGGAGCTCAACAAGACAGTATGGGAGGTGCCCGAGCGCTACCAGATCCTCACGCCGGTCGGCTCGGGCGCGTACGGCTCCGTGTGGTTATTGGGTTGCTAGATGTTTTCTCTCCTGCAGCATCACTAGAAGAATTCAATGAGGTCTATCTTGTCACTAATCTAATGGGAGCAGACCTCAACAACATAGTCAAGTTTCAACGCCTTTCAGATGAGCATGTGCAGTTCCTCATTTATCAGTTACTTCGTGGCCTTAAGTACATCCATTCAGCTGGACTAATACACAGAGATCTAAAGCCAAGCAATGTAGCTGTGAATGAAGACTGTGAACTCAGGATCCTGGATTTCGGATTGGCCAGGCAGACTGATGATGAGATGACTGGGTATGTGGCAACACGCTGGTACAGAGCGCCTGAAATTATGCTCAACTGGATGCATTATAATCAGACAGtggaTATCTGGTCTGTGGGATGCATTATGGGTGAGCTTATCAAAGGGAAGGTCTTGTTTCCAGGAAATGACTATATAGATCAGCTGAAGAGAATCATGGAGGTGGTTGGTACCCCAACTCCTGACCTTCTTAAGAAGATCTCTTCAGAGCATGCCCAGAAATACATCCAGTCTCTTCCCTACATGCCCCAGCAGGATCTGGGGAAGATATTCAGAGGAGCCAATCCACACGCGGTAGATTTGCTGAAGAAAATGTTGGTGTTAGACTGCGACAGGCGGATCTCTGCCACTGAAGCCCTGTCCCACCCTTATTTCTCTCAGTACCATGATCCTGAAGATGAGCCTGAGGCACCACTATATGACCAAACCCCCGAGAGCAAGGACCGCACGCTGGAGGAATGGAAGGAACTGGTGTTTGAGGAAGTTAACAGTTTTAAAGCCCCTGTCAACCAAACAGACAGCCTCCAGGCCGAGCAGTAACAGTTACTGTTCAACATTCCAAACCTGAGTCTAACCAACTACCCAAGAAGGACAAATACTGTTGATTTGTCTCTCATTCGACTCAAGACTGAGGATCTGAGGACCTGCCGGTTAGGCAACTGGAAAATGAGAACAGTGCATTCCATAGGCTTAAaggcctttgtgtgtgtgtgtgtgtgtgtgtgttatatactTATGAATGCCAGAAAGTAATATGTCTCTGCTTTCTAGGACACATTATAGACTCCTACATGCACAACCAATATATTATTATAGGAagcatgttgtgtttttattgtacttttttattacAAGGACAATACAAGAAATGTGGAGCAAAATATGGATGTCAATCAAACCAAGGTGAAGAGGAGAAGGTCAGCCTGATATCTACATGTTTACAGAGAAGGATTGACTGAAAggcattaatattaactttaTGTAATAAAAGACTTGGATGAAGGATGAATTTTGGCATTATGAAGTTATGAGTGTGGTTCAAAATACGAAAACAGCACAGTTAGTGTTACATTATTCACAGTATTGGTTTGTTGCGCCAAAGACTAAAGGAAACCAAAATACTTACAAGTATACATatagatgggtgacaaattaaaagaaaaactgttgACTGTTATGCTGTGAAGGCAATTTGCTAGCATGGTTTGTGTTCATTTGCCTCCTTGGAGGGAAGAGTCAATGGAAATTATTACAAAGCTCTTCTGACAGATcacatgatgaaatatttctatcctgatgttggtggtctcttccaggattgCGTTGCTCCCATCCACAGGGAGCGAGAGCTCACTGTATGATTTGATGAGTGTGAAAATGACGTGaatcatatgctatgacctTAACCTTAACCAGATCTGAACCTATGAGAGAATTTTGACAAATGTGTTTGATAGCGTTCTTAACCACCATTACCAAAACACCAACTATGGGAATATCTTTTGAGGAACAATGTTCAACATCTCCAGTACAGTACCAGACACTTGTAGAAtagtttttttcctccacttgTATACCTGTAGCTCTGTTTCCATTCTTTTGTTAACCTCTGGCATTTTATGTGTCTATCATTTACagtatgtattgtatgtatgcatacacatacatatagttaagtgcaaaagtttgcatttccttaatttgaaatgaaaccaaCAGTCAAAAAGTTAATGTTAAGATATTACTAGTTAACAAAATTCTATTTCTGAATGTGATCTAAATGTGGATGCTATTCCATATATCTCTAAAGACTTCTTCAGTTCTCCTGTTGTTTACTTTGAATCtctctgagtttttttttttttatttatttcatcatcTACCCTTTGTATAGTATAGTTACTTCTGTAAAAGGTCAATCTTTTGTTTTAGGTCTTGTAAAAGCTCTTTTCTTGATGCCAGTGACCCAGCTGCTTACAGCAAACAGCTTACAAATAAGTGTGTTTGAAATGCTCATGCCTCACATAAGACTTGTTGAAAGTAAACACGTGGTTGAAGTCTTTAGACACATTAATGAGgcagatttaaataaatgaacttaAGAGTGACACGGGGACGTGATATACTGTAACATACAGCATGTCTAAATGTGGTAATATCTCACTATTCAAGATCTTCTTTATATCATTTAAAACAATTGATTATAATATGGACATCTTATATACCTCAGTTgcttctgtgagtgtgtgaatatgaaatGTCTGACTTGAAAGTGATACATGTTTTGTGTTGAgatgttttatgttgtttttaatagCTGTTCTTCCACTGACTGAACCACCAGTTATTAGAGAAATGGATAACTACAGTTGGTTTGCACTGCACTGGTTTAACCTACAGTTATGAATTCTTTAGACCTCAAacctttttgtaaaataaatgaataa

Function

GO:

id name namespace
GO:0000165 MAPK cascade biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333597 lncRNA downstream 6526 12368959 ~ 12369265 (-) True G281486
TU333565 lncRNA downstream 121636 12251314 ~ 12254155 (-) True G281455
TU333459 lncRNA downstream 281732 12093857 ~ 12094059 (-) True G281373
TU333441 lncRNA downstream 339429 12033096 ~ 12036362 (-) True G281362
TU333155 lncRNA downstream 622899 11739730 ~ 11752892 (-) False dusp16
TU333624 lncRNA upstream 63042 12457563 ~ 12459092 (-) True G281510
TU333645 lncRNA upstream 81743 12476264 ~ 12477629 (-) True G281527
XR_003403338.2 lncRNA upstream 751761 13146282 ~ 13147358 (-) True LOC113532391
TU334183 lncRNA upstream 774154 13168675 ~ 13210493 (-) True G281964
TU334201 lncRNA upstream 864631 13259152 ~ 13285718 (-) True G281981
XM_026923091.2 mRNA downstream 1407 12369609 ~ 12374384 (-) True mapk12b
XM_034313233.1 mRNA downstream 8245 12363808 ~ 12367546 (-) True LOC113532409
XM_026922648.2 mRNA downstream 103164 12254255 ~ 12272627 (-) True zgc:165507
XM_034313357.1 mRNA downstream 253020 12110243 ~ 12122771 (-) True LOC113532307
XM_026923739.2 mRNA downstream 267129 12097521 ~ 12108662 (-) False LOC113532368
XM_026922708.2 mRNA upstream 7658 12402179 ~ 12409530 (-) True LOC113531803
XM_026923527.2 mRNA upstream 17338 12411859 ~ 12415074 (-) True LOC113532240
XM_026923617.2 mRNA upstream 35927 12430448 ~ 12435191 (-) True apex1
XM_026923619.2 mRNA upstream 51377 12445898 ~ 12451585 (-) True si:ch211-214j24.10
XM_026923776.2 mRNA upstream 93874 12488395 ~ 12517676 (-) True shisal1a
TU333129 other downstream 715464 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 787767 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 1116399 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 1368648 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332243 other downstream 2079670 10269757 ~ 10296121 (-) False LOC113532274
XR_003403346.2 other upstream 186402 12580923 ~ 12581063 (-) True LOC113532438
TU335292 other upstream 2779827 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 4564003 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 4709044 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 5584264 17978785 ~ 17980246 (-) False LOC113532261

Expression Profile