RNA id: XM_026923102.2


Basic Information

Item Value
RNA id XM_026923102.2
length 5004
RNA type mRNA
GC content 0.47
exon number 17
gene id sema3aa
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 9707450 ~ 9742678 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gTCAGACCTGTGCACAGGGGTGTCTTTTCTTCAATCGTTCACCCCCCTCCTCCACCTTCAGCTGCgctccttctctccctcccttctctcctcccctcccctcccctccgCTCTTGTGGATGGTGTAGTgctctgtctttccctctcagTCTGCCTGTGCAGTGGACAGGaccagaagtgtgtgtgttagagtgtgagtgagtgagtgtgaagcGTGGATGTTACGGGATCCATGACAAAGTCTCCAGTCCCTGGACACAGATTCACACTCAGCGCCTTACAGAGACAGCCAAAGAGGAATACACCTTAAACCCTAACACACCTCACACCCCCTTCTACATTCCCAACCACATGGAGCCATGTGAGCTCCTGTCTGCCTCGTTGGGAATCTGACTCGGATTGCCTCCTGTAGAGACGCTCACAGCTCTGGATCTGCCTcggagagcagagagaggagaggagcgaCTGCAGAGATCTTCACCCAGGAGAGAAGTACTCTTCCCTGGGCGCTGTGGGCCGGGAGCCCCCCGTGGGCTGGAGACCGGCGCTCCAGCACCATGGATTACCTGCTTGGGATTGTAGTCCTGCTGGGCATGGCGGCTCTGCCCGGGAGAGTGGCCCTGCAGAACCCCAAGAGGAACGTTCCCCGGCTCCGGCTCTCCTACAAGGaaaTGTTGGACTCCAGTAATTTAGTGACTTTCACTGGAATAACAAACAGTTCAGGTTACGACACATTTCTAATGGATGAGGAGCGAGGGAGGTTACTAGTAGGAGCAGAGGACCATATCTTCTCTTTAGACCTCGTCAACATTAACAGAGATCTCAAACAGATCGCCTGGCCGGCCACACCTTCAAAACGAGACGAGTGCAAGTGGGCAGGAAAAGACCTCGGAAAAGAGTGCTCCAACTTTGTGCGGGTGCTGCAGTCCTACAACCAAACACACCTATATGTGTGTGGCACGGGAGCATTTCACCCAATATGTGCCTATCTGGAGATAGGCAAAAGAGCAGAgGACAATATTTTCAGGCTGGACACATCCCACTTTGAGAATGGCCGCGGGAAAAGCCCCTATGACCCAAAGATGCTGTCATCCTCTCTGCTAATTGATGGGGAATTATATTCTGGAACTTCGGCAGATTTCATGGGACGAGACTTTGCCATTTTCCGAACCCTCGGAGCTCATCATCCGATCCGGACAGAGCAGCATGATTCCAGATGGCTGAACGATCCCAAGTTTGTTGGCATTCACCTCATCCCTGAGAGCGATAACCCAGAAGACGACAAAATCTTCCTGTTCTTCAAAGAGAACGCCATGGACGGAGAACACACAGGCAAAGCCACCATCTCCAGAATAGCACAACTGTGTAAGAATGACGAGGGAGGACACAGGAGTTTGGTGAACAAATGGACTACATTTCTAAAAGCTAAACTGACGTGTTCTGTCCCAGGGCTCAACGGCATTGACACACACTTCGATGAGCTCCaggatgtgtttttaatgAGTGCAAAAGACCCAAAGAACCCAGTGATCTATGCGGTCTTCACTACCTCCAGTAACATCTTTCGTGGGTCAGCGATCTGCATGTACAGCATGGCTGACATCAGGAGGGTGTTTCTGGGCCCTTATGCCCACAGAGATGGTCCAAATTACCAGTGGGTGCCCTTCCAAGGCAGGGTCCCATACCCCCGCCCTGGCACATGCCCCAGTAAAACCTTTGGTGGTTTTGACACCACCAAAGACCTCCCAGATGACGTTATTACATTCGCTCGTCTGCACCCTGCCATGTATAACCCAGTGCAGCCGGTTGGTGGACGACCCATTGTGGTGCGCACAGATGCAGAGTACCAGTTCACCCAGCTGGTGGTGGACCGTGTGGAGGCTGAGGATGGGCAGTACGATGTGATGTTCATCGGCACAGatATGGGGACAGTGCTGAAAGTGGTGACCATCCCCAGAGAGAGTTGGCATGACCTGGAAGAGGTGGTGCTGGAGGAGATGACCGTCTTTAGGgAACCCACCCCTATCACAGCTATGGAACTCTCCACTAAACAACAACAGTTGTACCTGGGTTCAGAAGTGGGAATATCGCAAATGCCGCTGCATCGCTGTGAGGTATACGGCAAAGCGTGTGCTGAATGCTGTTTGGCCAGAGATCCATATTGCGCCTGGGACGGCACTGAGTGCTCCAGATACTTCCCCACTGCTAAGAGGAGAACAAGGCGTCAAGACATCAGAAATGGAGATCCTCTGTCCCAGTGCTCCGATCTGCAACACAATGATGATCTGGAGGGCTACAGCAGTGTAGAAGAGAGGAATGTATATGGTGTGGAGAACAGCAGTATGTTCCTGGAGTGCAGTTCTAAATCTCAGAGAGCTCTCATCTACTGGCAGCTACAGAAGCCCAATGATGAGCAAAAGCTTGAgATTAAGTTGGATGAGAGAGTGAGTCACACCGAGCGTGGCTTGTTAATCCGCAGCCTGACGCAAGCTGACACCGGAGTGTATCACTGCCATGCTGTGGAGCACGGCTTCATCCAGCCACTCCTGCGCCTCACTCTGCAGGTCATCCCGTCTCAGCGTGTGGGGGAGCTGCTCCTGCGGACCGGTGCTGTCGATCGCGACTCGCCTGCCAAACAAAAGATTTGGTACCGAGACTTCCTTAGTTTGCTGGAGCACCCGGACCTCAACAGTGTGGATGAGTTCTGCGAGCATGTCTGGAAAAAGGAGCGCAAGCAACGTGGCAAGAAAGCTCCAAAAGCAGGGCTCGGGCTCACTCAGGCTCAGGCACAGGCACAGAAGAGCAGCCAGAATTTACAGACTTCAGCCCAGATTCAGAGTGATGGCCCAAAAGCAACAAATGTTCCAAATCTGCCCAAAATACAGAGAAGCCAAGTCCCACAGGGAACCACCAGCACGGACAGCCAGAGCCCCAAGCCGAGTCCTAGCACCACCTCGAAACTCCCAAGTGCTCAGGCAAACCAGAACCAGAGTCAGGGAAAGAGGGGCAACTCACCAGCCCGAAGAGCACCAGCCAGCACAGCCAAGTGGAAACAGCTCCAGGAGAATAAGAGGGGGCGCAACAGGCGCACCCACGAGCAACAGAGACCACCTCGCAGTGTGTGAgacaagcatacacacacacacacacacacaaacatcagacCCATCCATTCACACATGCCGACTTTGATTCAGCAGTCCACATACATGTGTATGttgcaaacatttaaacaaaagcacaaaaatacTGGATGTACTAGTTGGAGAAATTTGTCACTACTTTACCAGAGGAAGCACAATTACAGTGACATAATGGCGAAAACATTTATCAGTAATGTGTATAGTTGTGGACTGATACACCTTCCTGTACATAGAAATGTTTCTATAGTGTATGAGTCCCCTAAGACTCTTTACTCCTGGACTGAGAGAGGGGAATTGCCATTTCCAAGACTGTTTCCTTTGCTGAAACATCTGTTGCGAAGTGGCCGAAAAGCTTCCATGGAAACCAAGATGATTTATTCAGGAATAAAACCAGAATGTTGACTATTTACTTAAATTCTTCCTGGAGGATTGTACCTGTTACTATGGTTCTGGATCAGACAATATGGACTGCCTTCCAGCCCAAAAGAtacttatataaaaaaaaaaaaaaactacggGAACTGGAGTCTCGTTGGTCTGATTCATAATGCAGTGTTATAGGAGTAACTATAGTGGACActgtataggaaaataactgaGTATCCATGCATACAAGACGTGGTTGGCCAAAACGTAGGCATGTGTTGCTACCAGCCCGTCTGACCCTTGTAACCATTTGACTTAAATGTTAGCCTAATTATTTGTtgtatattcataataaacGAATCACCCAAATGGACTAAGAAGTCAAAACCTGTGGAAACTATTTGCCCTAAAGTACAGAATTTAAATATGTTGTGCATGATGTTTAATTGaatacaaaatctttttttctgaattaaGTTGCATAGCGAAACTATTAAACACAGAGTTTCAAATTACAGGGGGTCTTAAGAattttttgatttcatttaagataaaaaaaatgtcttgtgcCAACCGTTGCATCGAAGGTGCTATGTTTGGTTATTGCTACATcatcaaaaaaaagttttttattttttaagttatttttatGCCTCATACAAATGTGCTCTTGCAGTCTATGTCGTAGCTTAGGCTGaaagtgtaaatatatacagtcaggcAACTCATGACTATTTATTGCTGATTTTTAAAGGGTTACAGTTATTTTTGATATTGTAATGTTTTGAGctcaaatgtaaacaaaagtgACTGAAATATGACAAAGCACATGGATGGACCAATAACCATTGCCTTTTTTAGTTGAACATATTACTTCTAAGAACCCAGAAACATGCaaaaatttagtttaatttttaaatatctttttttctgtcactcacctctgtgtgtctctttagTCTTCACATTTTCTCTGTAATGCCCCCAAACAGATCTgtctatatttctgtatttgtatgaATGACTCATTCATGAAATTGCAAAATATTATGGAGCTATGAACAATTTGTAAGAATGCCATTAGATGTGAGACTCCTGTAGAAATGTGTAGGCTAAACATTTGACTGACAGCCACTGAGTACGAACCGCATGTGCATTCGAACCCTAGTGTATCTCCTTTACtgtcagtgttttgtgtgtgataATTTCCTTTCCATGAATATAAAAGATGtgaacatttttgtttcattttaataagacaataaaaataccCGCCCCCTTTTGTGCATTATAAAGCTGTAATCTTTTGTACAAATACCCCCCAGAACTGTATGATGTTTCAATGCAATACAGAGCACTCCCAGTGTTTCTTGCTTCAGACATGTTTTGTCTGGTGGAGATGGGGAAATCTAAGGGAGACAGGAGCTCTTATAACTGTCACTGGGTGTTTCAGGCATGTTTTCGGttgtctaaataaatatttcctctATCATTA

Function

GO:

id name namespace
GO:0048755 branching morphogenesis of a nerve biological_process
GO:0048844 artery morphogenesis biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0035441 cell migration involved in vasculogenesis biological_process
GO:0005576 extracellular region cellular_component
GO:0016020 membrane cellular_component

KEGG:

id description
K06840 SEMA3; semaphorin 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU331548 lncRNA downstream 78297 9627337 ~ 9629153 (-) True G279730
TU331545 lncRNA downstream 82331 9624599 ~ 9625119 (-) True G279728
TU331457 lncRNA downstream 174029 9533222 ~ 9533421 (-) True G279641
TU331441 lncRNA downstream 187372 9519833 ~ 9520078 (-) True G279625
TU331440 lncRNA downstream 187723 9517986 ~ 9519727 (-) True G279624
TU331669 lncRNA upstream 61500 9804178 ~ 9804403 (-) True G279832
TU331737 lncRNA upstream 147954 9890632 ~ 9891233 (-) False cracr2ab
TU331824 lncRNA upstream 204653 9947331 ~ 9947536 (-) True G279967
TU331860 lncRNA upstream 261663 10004341 ~ 10004812 (-) True G280002
TU332117 lncRNA upstream 335408 10078086 ~ 10078356 (-) True G280228
XM_034313131.1 mRNA downstream 9254 9629331 ~ 9698196 (-) False pcloa
XM_026922721.2 mRNA downstream 18409 9629331 ~ 9689041 (-) False pcloa
XM_026922719.2 mRNA downstream 18409 9629331 ~ 9689041 (-) False pcloa
XM_026922720.2 mRNA downstream 18409 9629331 ~ 9689041 (-) False pcloa
XM_034313130.1 mRNA downstream 18409 9629331 ~ 9689041 (-) False pcloa
XM_034313140.1 mRNA upstream 12907 9755585 ~ 9854329 (-) False tspan11
XM_026923489.2 mRNA upstream 81366 9824044 ~ 9854328 (-) True tspan11
XM_026923486.2 mRNA upstream 83379 9826057 ~ 9854329 (-) False tspan11
XM_034313138.1 mRNA upstream 83379 9826057 ~ 9854329 (-) False tspan11
XM_034313139.1 mRNA upstream 89417 9832095 ~ 9854329 (-) False tspan11
trnay-gua_2 other downstream 84831 9622533 ~ 9622619 (-) True trnay-gua_2
TU331209 other downstream 498887 9207351 ~ 9208563 (-) True G279415
XR_003403340.2 other downstream 898112 8809220 ~ 8809338 (-) True LOC113532431
TU330637 other downstream 1487770 8218561 ~ 8219680 (-) True G278912
TU330291 other downstream 1639373 8053088 ~ 8068077 (-) True G278634
TU332243 other upstream 527079 10269757 ~ 10296121 (-) False LOC113532274
XR_004579975.1 other upstream 1252427 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332827 other upstream 1496257 11238935 ~ 11259392 (-) True vegfab
TU333108 other upstream 1843626 11586304 ~ 11588024 (-) True G281074
TU333129 other upstream 1915212 11657890 ~ 11660327 (-) True G281092

Expression Profile