RNA id: XM_026923135.2


Basic Information

Item Value
RNA id XM_026923135.2
length 5204
RNA type mRNA
GC content 0.45
exon number 22
gene id sfmbt2
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 13665323 ~ 13724630 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGACATGCGCAGATGCGGGATGCCAtattgcagagagagagagagagagagagagagagagacagaggagagggagagagagagagagagagagcttcagccggaggagaaaaaaaggggCAATCGCTGTATTTCACAGGCTCCAGGAAACTTCATTAAGGATTTGAATCACTGTGAGCTGACAAAGTGGGAAACAGTCATCAGGACTCTACGTCTCCAAGGCAACAGCCTTCCCAAGGAATCGATGATGACATCAGCAGGGAGGAGCACTCAGAGCCCGTCCAATGGGAGAGCAGAACACAGTCACTCAGATATGGAGTGTGGAGAAGAGGAACTGGACTTTAACTGGGATGAGTATCTGGAGGAAACAGGAGCCACGGCAGCTGCACACACCTTATTCAGACATGTGGAGCTGAGCCTGCAGAGCAGTTTCCAGGCTGGGATGAAGTTGGAGGTGGCCGATAGGAGTCGCGCTGACACATACTGGGTTGCTACTGTCATCACAACATGTGGCCAGCTGCTGTTGCTGCGCTACTGTGGCTACGGCGACGAGCGCAGCGCTGACTTCTGGTGTGACGTCATGACTGCAGAGCTGCATCCTGTGGGCTGGTGTGCGCAGAACAACAAACTGCTGCAGCCGCCTgaagATAACATTTACCTCAGAGCAGCTATTAAAGAGAAGTACAGCGACTGGACTGAGTTTCTGGTGAAGGAGCTCACAGGCTCACGAACAGCACCAGCTAACCTGCTTGAAGGGCCTCTGAGGGGTAAGAACACAGTGGATCTGATTGTGCCTGGGTGTTTCTTAGAGATCCGTGATGCCAGCGAGCCATTTGTGTACTGGGCAGTGCGGGTGCAGCGAAACGTTGGCGGGCGTCTTTGGCTCAGCTATGTGGGACTGGAAGAGCCCGCCCACTACATCTGGATTTTCTACTTGGACATAAGGCTTCGTCCACTGGGCTGGGCTAAAGAAAACTCTCTCACAATGGAACCACCAAAAGAAGTGCGGGATCTGAGGAGTACTACGGAGTGGAGTGAAGCTGTAGAGAGAGCCATGTCTGCAGCCCTGGAAAAACCTCTGCCTCTAGAGGTCTTTAAGgatcATGCTGATTTGCGTAAACACTCATTCAAAATGGGGATGAAGCTAGAGATGGTATCACCACAAGAACCCTTCCACATCTGCCCTGTGTCTGTCACTAAAGTGTATAATGAGTACTACTTCCAGGTCACTGTGGATGACCTGAGCGGTGAAGCCCCGCCCTGCTCAGTGCTGTGTCATGCCGATTCTGCAGGCATCCTGCCAATCCAGTGGTGCTTGAAGAACGGGGTTGGCCTGCAGAGGCCTAGGGGTTTTCAGTCTCAGGACTTTGACTGGGCAGATTATTTGAAGCACACAGGTACTGAGGCTGCCCCAGATGCCTGTTTCCCCAGTgcgtCTCTGAGTCGGGGCTTCTGTAAGGATACATGGTTGGAAGCTGTAAATCCACTTCAGCCAGGTGAAATCAATGTTGCACGCATCACTCAGGTTAAAGGTCGGCTCCTCTGGCTTCGATATGAAGGCCTGACCAAGCCCCTAGCTGAGTGTTTAGTGGATGTTGAGAGTATGGACATCTTTCCTGTGGGCTGGTGTGAAGCCAATGCCTATCCTCTAACACCTTTACGCAAAGCAGTGTGTCAGTCTCAAAAGAAGATTGCTGTGGTGCAGCCGGAGAAACAattGGCTCCTCCACCCAAAGAAAATGTTCCTCTCGACCATTTCCAGTCTGCTGCCATGGACCCAGTTTCCGTAAATGGAAAGTACTGCTGCTCTCAGATCTTTGTGAATCATCGCTGTTTTTCTGGGCCATACCTCAACAAGGGAAGAATCGCCGAGTTACCACAAGCTGTGGGGCCTGGCAAGTGCACACTCGTCCTCAAGGAGGTACTGACGATGTTGATAAACTCAGCCTATAAGCCTAGCCGTGTTCTCAGAGAGCTAGAGATGGTGGTAGATCCACAGTGGAACTGTCTGGAGGAAACCCTGAAAGCCAAGTATAAAGGGAAGAGTTATCGTGCAAGTGTGAGGATTGTGTGTTTGGCTGAGCAGGTAGCAGATTTCTGCCGCAGAGTGTGTGTCAGACTGCAGTGCTGTCCAAACCTGTTTGGCCCCACACTCGTCTCGGAGAAGTGTCCGGAGAACTGCTCCATACACACCAAGACCAAGTACACACATTACTAcggaaagaagaaaagagtggGCCGTCCCAGTCTAGGAGAGAGCAATCGGGAGGGCGACATGGCCAAACCGGCCCGCCGCAGAAAGAAGCGAAAAGCTGTCTTTGTTCAAAAGAAACGCCGCTCCACTGTTACAGGATACCACGCCATGGAGTCAGCTCAgGACAGTGATGATTTTGATGTTTttgatgaagaggaagaggagggatCATACAGTGGGGAAAGCTCCAGCTTGGAGCTGCGTGAAGAGGCTCCACTGCGCTTTTCGACACGGCGAGGCCGACCCTGCAGGTCTCTCACTCTGCCTGGGACTGGGGCATCCACAGAGCGGCCAGCACTCCGCAGATCCACACGCTcgctctcttacacacacaaccaggcagccaagcacacacacacaaagacagCACAtacagaagaggaagagagccGCTTGGTTCTAGAGAGAAACCCTCTCGAGTGGAGCGTGTCAGATGTGGTCAACTTCATCATGTCCACAGACTGTGCCTCGCTAGCCAAGATTTTCCAGGAGCagGACATTGATGGCCAGGCCTTGTTGTTGCTGACCCTCCCCACTGTTCAGGAGTGTATGGATCTCAAACTTGGCCCTGCTATCAAACTCTGTCACCAGATCGAACGTGTTAAAGTGGCCTTCTATTCCCAGTATGCTAATTAAGCTAACACAGACTAACATCTATTTCTCTCAGTGGATAAATACGCTTGACACATACTGCTCAGGGGCTCTTACACCGTCAGgaaaaaaatcctacacaaCTGGCCATATGCTGCAAAGGTGAAAGCACAGCGCTTTCCTGAAGAACTTCTGTTGTTGAACTTCTGCTGAAAACTTCTGCTAACCCCTCTGCTGTTTATGATAAAAGGATTTTACCCAAGTATGAAATGTATGCTGGGGACAGCTCTTGAAGAAATATGGAGTGACAATACGGAAAGCGGTCTGATGTTCTTTGTGCGTATGTTCTGCGTGTTTGAGGTTACTGAAGCAGATTTTTTGAAAGGATAATTTCTATTACAAATAGCAGTTTAAGGACAACAGAGGGTGTTTCTCAATACCAAAAATGAGAAGAATCGACTTGCATTCTCACAAAGTTACCTTAATCTCACCAACTAGGATCAATTTGATGTGTGCTGCATTACTAATACTCGCCTTTAGCACTAACGGCTTCTGGCTTCcgaaacaattaaataaaagcttGCTAAGTCTGGGGTTATACTTGACACATGGCTGCTTGTACTACACTAGGATTGGGTGTATCGAATCGATGCATattaaaaaaggatttttttttttaaggattaaaTAGATTATTATCAAAAAATGACCAACAGCTTATGTGTGAAAATAAGTAACagttttaaactgatgtgtaaataatttaacaggcTAGCAAAGTGactctgatacttaaaataatCCTTCTCTGTGTCATCAGTATTTGAGAATTAACAGTAGATTCTAAaaaagttggtcacatatcgATCAGAGGCTACTAAGCCAAATTGTATTGTTTCacagcagattcagtggtatcatcaaatatcgaatTGTTGCCTTcttatcatattgtatcatgCGCAATCCTGAGATTTACACCCTTAGTGTGAATGCAGCAGTACCTTTTGTACCTCTAGATGACTGAAAGTTCTGACCACTAGGGGGCAGGTCAGAGCCAGAGCATACCTGACCAGCCACTGACCATTTCCTCTTATTCTgaacaacaaaataaacagtgaagaTGCCAGGATTTGAGCAGCCCATGATAGACAGTAGCAGCACCATGGTAGGTAGTACATCAGGCTGTTAAACCAATCTAATAAGGAGCATGCTTACAGCATACACACTGGTATTGCACCATATGCcatgtgacatttttttatttatttttttggatgtGCACAATCAACACACTGTAAGAATGCACAATATGTGTAGCAGCCatctcacatacacatatgcacatataACAGCCTAATGCTATCACAGAATTTTAGTGCTAGGTAGTTGATTTCGCTAACTTAAGCCTCATCCTGAGGTGATTCATCACATCTACCATCACTGTATTTCAATGAATTACAGAACTTTTAGTACACTTAACAGAACTTACAGAACCCTTAAGCCTTCTCGATGAATCACTGATATATGGGAAGCACCCAGCTGTTATAACCATTCTTACATTCTTCAGTAGAGGAACTGAACTTTGGCAATGGAACATGACTTAAAGCAGTACATAAGAACAAACAAGCACACGTATTGAGAAACACCCAATGTTCCTGTTAAAGAACTATGATTAACCACCCGATCTGTCCGCATTTTCCCTTCAGAGACcaaatgatatatttataaGTGTAATTAGATTTGAAGGATCagtgtataaaatgaaataatatatttgaGATATTTATTTTGGCCTGACAAACAGGTgctctcatgttttttttttttttttttcaaaagggGACAGTACAGATTGGTACATTGTTCCTTGTTTCTACCActttgtataaaaaaagaaaaagaaaaaaaaaacactggttaCTGTatggaaatgtttcatcatcTATGCAAAAACAAGACTTTTCTTATGGTAAATTTCTACTTTGCTGTATGACCCAATGCTTCCCTTGAGAATTTTGTACATAGGTTGTGTACCGATTTTATTGCCTAATAGTAAAATCTAGTTTTAATACAACATTTGATGCACTGAAAAAAACTTTGATTTTCccatttataatgttttttattattattattattattattattattataatgtaccAGAAACAGAAAGTATTCTTCTTATCAAGGGGGAAAAAGGTAAAAGCAAGTAAATGACAAGGACAGTGTAAGGGCAGAGAAATCAAACCAACATCCTGTGGCTATTTATACATCCCACTAAAATGAAACGATTGTTGAACAATGCTGTAAATCACCCATTGCCCATAAAAGAGTGAAGAACTTTTCAGAATGTCA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU334388 lncRNA downstream 89948 13573547 ~ 13575375 (-) False LOC117599591
XR_004579994.1 lncRNA downstream 91636 13571800 ~ 13573687 (-) True LOC117599591
TU334376 lncRNA downstream 101377 13559259 ~ 13563946 (-) True G282116
TU334298 lncRNA downstream 237451 13427657 ~ 13427872 (-) True G282060
TU334285 lncRNA downstream 255997 13407613 ~ 13409326 (-) True G282047
TU334559 lncRNA upstream 108618 13833248 ~ 13837431 (-) True G282279
TU334567 lncRNA upstream 114028 13838658 ~ 13840594 (-) True G282283
TU334636 lncRNA upstream 213026 13937656 ~ 13937879 (-) True G282349
TU334657 lncRNA upstream 229369 13953999 ~ 13969897 (-) False G282368
TU334658 lncRNA upstream 243893 13968523 ~ 13969897 (-) True G282368
XM_026923669.2 mRNA downstream 17126 13621297 ~ 13648197 (-) True prkcq
XM_026923211.2 mRNA downstream 115820 13532919 ~ 13549503 (-) False LOC113532074
XM_026923212.2 mRNA downstream 115820 13532919 ~ 13549503 (-) False LOC113532074
XM_026923210.2 mRNA downstream 115820 13532919 ~ 13549503 (-) True LOC113532074
XM_026923213.2 mRNA downstream 116255 13532919 ~ 13549068 (-) False LOC113532074
XM_034313141.1 mRNA upstream 26893 13751523 ~ 13763790 (-) True LOC117599536
XM_026923772.2 mRNA upstream 58132 13782762 ~ 13787434 (-) True LOC113532385
XM_026922586.2 mRNA upstream 83779 13808409 ~ 13829508 (-) True LOC113531720
XM_026923243.2 mRNA upstream 126913 13851543 ~ 13858673 (-) True kin
XM_034313070.1 mRNA upstream 1149220 14873850 ~ 14885572 (-) False LOC113531970
XR_003403346.2 other downstream 1084260 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 2004996 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 2077299 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 2405931 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 2658180 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU335292 other upstream 1449718 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 3233894 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 3378935 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 4254155 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 4254155 17978785 ~ 17980246 (-) False LOC113532261

Expression Profile