RNA id: XM_026923145.2


Basic Information

Item Value
RNA id XM_026923145.2
length 1914
RNA type mRNA
GC content 0.51
exon number 16
gene id svopl
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 8429495 ~ 8439796 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTAGTTACTTTCCCCTGATAAGAGTTGGCAGCACTGATGAGCAGCGTTAGTAAATAGTCTGCATGGCCCTTTAAAGCCCAGGTCCTGCCTCCTGCTGTTCCTCAGTTCCTCTGGGACTCAGTTTACCTGTCCGCAGGTACAGGACGGAAACTTGTTTTTGGCCAGAGCAATTATGAGGCGAATTCGGATTTTTTCAGCCTTCAGAAATCACTCACACATCGGGATATAAGAAGCAGAAAAGTAGCTTTGTGCTGAAGCTCTTGGATGAAGAGGATGGCGGGAGGAGGGAgcgcgagctccatgaagacgcAGCTGGTGAGCGCGATTCAgctgcaggagctggaggaggagcgCGAGGACGAGCGCGAGGAGGAGCGCGAGGCTGCTGCTAAACCTGCTGCTAAACCTGTCGAGGAAGCCAAGGATCAGAAATGTTACAGCGTGGAGGAGGCTGTTGAAAGCATTGGCTTTGGGCGCTTTCACATTCTTCTCTTTGTTATTATGGGCAGTGCCAATattGTAGAGGCGATGGAGATCATGTTGTTGGCTGTGGTGTCTCCTGAGATCCGATGTGAGTGGCGTCTGGAGGATTGGCAGGTGGCCCTGGTCTCCACGatggtGTTCCTGGGCTTCATGGTATGCGGGGTGCTGTGTGGATATGTGGCGGATAAATATGGCCGCTGGAAGGTGGTGTTTGGGGGCTTCGTGTGGGCCGCATATTTCTCTGTGCTCACGTCATTCGCGCCATCCTACGGCTGGTTTATTTTCCTGCGCAGCATGGTGGGCTGTGGAGTAGCAGCCACGTCACAAGGGTTTGTTCTGAAGACAGAATTCATTCCTGCTAAATACCGAGGCTCTCTGCTGCCCCTGGCCTCAATTTTCTGGATGGTGGGATCGTTGCTCATCATCATTCTGGGGATGACTGTGGTGCCCACGCTGGGCTGGCGCTGGATGATTCGCTTCTCCGTCATCCCCAGTGTTCTACTAATCATCCTCTTCCAGTTTATCCCTGAGTCAGCGAGGTTCCAGGTCTCGGCAGGGAATGTAGAAGGAGCTGTTGCCACTTTAAAATGGATCGCTAAGATGAATGGAGCCAGCTTGCCTGAGGGGGAACTACGGGAACCTATAGTGACGGAGAGAGGAAATGCTGCCACTCTGGTTAGTCGAGCTTTCAGGATGACATCTCTGCTGTTGTGGTATTCATGGTTTGTAGCGTCTTTCTCCTATTACGGCTCTGTGCTGAGCAGCTCAGAGCTCCTGGAGAAGAACCTGCTCTGTGTGATCGACGCCGAAGCAGAACATGAcatcaaacacaaacaggaCGAGGGGTTGTGTTACTGCATCCCGTTCAACATGGCTGACTACCAGACCCTCCTCATCAGCTGCCTGGGAGAGGTGGCATTGATCCCTCTGAACATCGGCCTGTTGCACGTTGTGGGCCGAAAGTGCAGCATGGTGATCCTGCAGGTCCTCTCGGCCATCTTCTTCATGCTGGTGAATATCTGCACCACCATGTTTGGTTTCACAGTGTTGCTCTTCCTGCTGCGTTCACTGGTCTCGATGAATTTTAATGtggtttatatttatactgCAGAGGTTTACCCTACAGCAGTGCGCTCTATAGGAATGGGCTTCTGTACTTCATTCAGTCGAATCGGTGGGATGATTGCACCCTTTATAGCACAGGTGTTGATGTCTAAGTCTGTGCTGTTAGCGTTGTCTCCGTTTGCTCTGACATGCTGTCTGTGCGCTATCGGGACTGTCCTGTTACCCATCGAGACCAGAGGACGAGCATTACTGcaAAATGAATAACGCACACCTGCTCATGAAGAAactatgaatatttcataactacagatttttttttgtttgttagttttttgtAAATTGATTAAACTTGGATCACAAAACCAT

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330707 lncRNA downstream 38936 8389498 ~ 8390559 (-) True G278963
TU330657 lncRNA downstream 189819 8238974 ~ 8239676 (-) True G278920
TU330636 lncRNA downstream 212202 8217013 ~ 8217293 (-) True G278911
TU330235 lncRNA downstream 462074 7966819 ~ 7967421 (-) False avpr1ab
TU330151 lncRNA downstream 550478 7796835 ~ 7879017 (-) True G278520
TU330836 lncRNA upstream 172322 8612118 ~ 8612342 (-) True G279064
XR_004579873.1 lncRNA upstream 258634 8698430 ~ 8698791 (-) True LOC117599455
TU331172 lncRNA upstream 753820 9193616 ~ 9194003 (-) True G279382
TU331392 lncRNA upstream 896540 9336336 ~ 9337530 (-) True G279588
TU331405 lncRNA upstream 946337 9386133 ~ 9387789 (-) False G279592
XM_034313195.1 mRNA downstream 3117 8402289 ~ 8426378 (-) False mical3b
XM_034313194.1 mRNA downstream 3133 8390930 ~ 8426362 (-) False mical3b
XM_026922837.2 mRNA downstream 3140 8390680 ~ 8426355 (-) False mical3b
XM_026923144.2 mRNA upstream 3413 8443209 ~ 8471894 (-) False si:dkeyp-27e10.3
XM_026923142.2 mRNA upstream 3413 8443209 ~ 8471894 (-) False si:dkeyp-27e10.3
XM_026923141.2 mRNA upstream 3413 8443209 ~ 8471894 (-) True si:dkeyp-27e10.3
XM_026923584.2 mRNA upstream 34141 8473937 ~ 8482571 (-) True parp12b
XM_034313061.1 mRNA upstream 48356 8488152 ~ 8548628 (-) False sbf1
TU330637 other downstream 209815 8218561 ~ 8219680 (-) True G278912
TU330291 other downstream 361418 8053088 ~ 8068077 (-) True G278634
trnal-aag_11 other downstream 835687 7593727 ~ 7593808 (-) True trnal-aag_11
trnam-cau_46 other downstream 2326348 6103076 ~ 6103147 (-) True trnam-cau_46
XR_003403345.2 other downstream 2396302 6033029 ~ 6033193 (-) True LOC113532437
XR_003403340.2 other upstream 369424 8809220 ~ 8809338 (-) True LOC113532431
TU331209 other upstream 767555 9207351 ~ 9208563 (-) True G279415
trnay-gua_2 other upstream 1182737 9622533 ~ 9622619 (-) True trnay-gua_2
TU332243 other upstream 1829961 10269757 ~ 10296121 (-) False LOC113532274
XR_004579975.1 other upstream 2555309 10995105 ~ 11007143 (-) True si:ch211-51e12.7

Expression Profile