RNA id: XM_026923158.2


Basic Information

Item Value
RNA id XM_026923158.2
length 3491
RNA type mRNA
GC content 0.43
exon number 15
gene id LOC113532053
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 15122734 ~ 15138477 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgtgtctgatcagGGCAGATATTCAAAAGACAGCTAATTCCTCCAATCGCAACAAACCCTCacttctctgtatttctcttctACAGCTCCCCCCCCCCAATTTTGTCTGTCTCTTGATCATTCTCCCctctttactctctctcactcttttacCTGCATTTATAGTACTTTGCTGCTCTggcactcattttttttctttgtttcctcCCTTCCAAATGATGCTTTCTGAGCACAACTTGACAATGCAGTATGCTTTTGTGTAGTTTTCTTGGAATCTGCTTGAAGATACTGAAATTTGATCTTCATTAGGTAAAGAGTTTGGAAGGTATCTATCTGGTTAAATCGAAATCACATGGTATCATAAGCAACAAAATGGTTGATACAACAGAGGGGGATAATGCAACAATCACGAGTCAACAGACAGTTTGTGtccctgacaaaaaaaatgccagaGACCCCTTCTGCTCTACTCTTAAAATGTTTATCTTGTCACTGGCTTTTACGTATTTCACCAAGACTTTGTCTGGCACCTACATGAAGAGTGTCCTTACTCAGATACAAAAGAGGTTTGACCTGTCCAGCACTCTCGTTGGCTTCATCGATGGCAGTTTTGAGATGGGTAATCTGCTCTTTCTGGCTTTAGTAAGCCATTATGGGGCAAAATTGCACAGACCCAGGCTGATAGGATGTGGTTGTTTTCTGATGAGTCTTGGTTCTGCTGTCACTGGGCTACCTCATTTCTTCATGGGACGGTACAAATATGACACAATGATACCAGACTCAGTAAATCAAACTGTCAGTATTGTTGCCTGTCAAGATTTCAGAATGCAAAGCAATTACCTGGATATACACCTAGAGCATTCACAGGGTTTCAAAGCAGGCGCAGTCTGTTTGGAAGAACCTGGATCTAACCTGTGGGTTTATGTGTACCTGGGGAACCTCCTCCGTGGGATAGGAGAAACACCACTCATGCCCCTGGGGATCTCATACATCGATGACTTTGCAAAAGCAGAGAACTCTGCATTTTACATAgCATGCCTCCATGCAGTAGCACTCGTGGGTCCCATGTTTGGCTACGTATTGGGCTCCTTGGTTTCCAAACTGTATGTTGATATCGGATTTGTCGACACTGagacaGTGACCATCACTCCAAAGGACATCCGGTGGGTGGGTGCCTGGTGGCtgggtttttttgtgtcatCTGCCCTCATGCTCCTTGCTGGCATTCCTTTCTGGTTTCTCCCTCGCTCTTTACTCAAGCGAGATGAGGAACAATCCCACAGGGACAATCCCAGCTCTCAACCTGGCAACCAGGAGCATACTGTACATTCTTCTgtgttatatataaaactggCTGACACTGCAAAAGGTTTCTTGTCCTCACTGAAGAAGCTCTTGGGAAGCCCTGTTTATACCCTTATTCTCTGTGAACAAGTCCTGATTTTCAGTTCTTTAATTGGCTTCTTCACCTTTAAGGCCAAATACATTGAGCAGCATTTTGGTCTGTCCTCCACCAGAGCAAATTTCCTCATTGGTTTGATAAACATGCCTTTATCAACTTTGGGGATGTTGCTGGGTGGCTTGCTGATGAAGAGGTACAAGCTGGGTTTGCTATCAGCAGCCCAGCTCTCCTTCTTCACTTCTTTCTTGGTCATCCCCCTACTGCTCCTGCAGTTCATGTATAAGTGTGACAACATACGCCTGGCTGGTGTTACCGTCTCTTATAATGGCACACCCCAGATTTCATATGATGAACAAACGCTGTTCTCACAGTGTAACCAGAACTGTTCATGTTCTGCAGCAAAGTGGGATCCAGTGTGTTCTGATGATGGCATTACATTCATGTCTCCATGTCTGGCAGGATGTACAAGTTCCACAGGACAGGGCAAAAATACGGTCTTCCACAACTGCAGTTGTGTGTTGAACCTGTCCCCAGTAGAGGGCAGCACCTCTGTGTCTCTTGGACAGTGTCCTCCCACTCCAGTGTGTAGTCGAAGTTTGATGTTATATATGGCCACATTTGGCATTACTTCTTTCGTTAAAGGTCTGGGAATGACACCTGTGTTCATGGTCATGATGCGGTGCATCTTTCCTGATCTAAAGTCACTGGCCATTGGCATTCAGACTCTAGCAATAAGAACTCTAGCTGGTATTCCATCTCCAGTGTATTTTGGATCTGTGATTGACTCCACCTGTTTGAAATGGAGCATGAGGAGCTGTGGAAGCCAAGGGTCCTGCCACATGTATGATACAAACATGTACAgAATTGTCTTCCTGGGCCTGACGACAGGTATATTTGGCTGCTCTCTGCTTTTTGACCTTGCTATGGTTGTGCTGTTGAGAAATCAATTCCGTATGGAAGCAGTGCGAACCCACCAGGATGAAATTGAACTACAAGGCCCAAATCAACAGTGTAATGATGGAACAGAGTCCCACAGCCTCAGCAGAAACACCAGAGAAGTTTAAGGATGAGGCTAATGGTTAGAATAATGTGTGATCTGAGTTTCTTCAGCCCCATGGAAAGAAACACGATCCAGAATGCAGAAGATAGTTGAGCATGGAGGCAAAAGTACCTGGTGTAGCCTAATTCAGTCACTATGCCACTATATGGTATTCCCAACTTTATGTTCTCTAGAAAAAGTTGTAGCATTTTGCATTCACACGTTATTAAATGTTTCTCTGTTCAGGAAAGATGTCTGGAATTTTAACTCCCGTCAACagttttactgtcattttttatttcgtCATCACACTGAAGCACACTTCAGCCACAGCTCAATTATATTCCAGCATCTCTTCTGTTGCCCCAAGTTAAATTACTTtcctaatttaataaaatgatctGGTGTCAATAGCTGCTTGTGTTATGAGCAATTCAGTGCGTGGGTGCTTGAGCTGTATAAGCCatgctttttgtgtgtgtgtgtgtgtgtgtatttgtgtgtgagtaagaGAGAATGGGAAACATGAACATGCTGTAAATAATTAGTTGGAGTAATGGAAAGTATAGATTCactgtaacatactgtatgtacccATCTTATTATCAAACAGCTCACATGTCAGTGTACATAAGCTTCCTCCGCTCCTTTGGCTGGATAAGATTTGATGTTGCATTTAGCATTTCATGCTCATAATCTGAGGGGCAAAGTCCATGAGTATTCCAACCTCACCCCCTTCACACTGTCATATGCACTTATTAGGGacataaacaaatacattttttggaTTGAACAAATAaaggatacaaatacagacataaATAGGAGCTGCATTCTCTACAGACTAGAGATCATGCTGGATGCAATAAAAAAAGTTGGTGAGCATGGGACAAACATTAACATATGAGTAGGAGATTTAGtaggctatttttttttgtctgtcataAGTGGTTTGCTACAGTAGCTACATCTTAAACAATGTCTTACTTAGCTCCAAAATAAGATCATATTCATACCACATTTGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU335044 lncRNA downstream 16739 14812922 ~ 15105995 (-) True G282718
TU334999 lncRNA downstream 383297 14739216 ~ 14739437 (-) True G282673
TU334974 lncRNA downstream 391730 14715045 ~ 14731004 (-) False G282649
TU334971 lncRNA downstream 391730 14721809 ~ 14731004 (-) True G282649
TU334700 lncRNA downstream 732177 14389823 ~ 14390557 (-) True G282410
XR_003403333.2 lncRNA upstream 74024 15209348 ~ 15213255 (-) False LOC113532334
XR_003403332.2 lncRNA upstream 74024 15209348 ~ 15213255 (-) True LOC113532334
TU335298 lncRNA upstream 135670 15270994 ~ 15271200 (-) True G282950
TU335356 lncRNA upstream 215382 15350706 ~ 15353441 (-) True G282999
TU335389 lncRNA upstream 252624 15387948 ~ 15390101 (-) True G283022
XM_026922587.2 mRNA downstream 4173 15116227 ~ 15118561 (-) True LOC113531721
XM_026922888.2 mRNA downstream 11469 15101356 ~ 15111265 (-) True pyroxd1
XM_026922889.2 mRNA downstream 11652 15101356 ~ 15111082 (-) False pyroxd1
XM_026922970.2 mRNA downstream 43992 15059512 ~ 15078742 (-) False LOC113531968
XM_034313143.1 mRNA upstream 4601 15139925 ~ 15184075 (-) True LOC113531972
XM_026923534.2 mRNA upstream 78612 15213936 ~ 15236310 (-) True LOC113532243
XM_034313258.1 mRNA upstream 101218 15236542 ~ 15263393 (-) False LOC113532267
XM_026923565.2 mRNA upstream 101218 15236542 ~ 15263393 (-) True LOC113532267
XM_034313283.1 mRNA upstream 190049 15325373 ~ 15336933 (-) False LOC113532250
XR_003403346.2 other downstream 2541671 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 3462407 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 3534710 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 3863342 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 4115591 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU335292 other upstream 39024 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 1823200 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 1968241 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 2843461 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 2843461 17978785 ~ 17980246 (-) False LOC113532261

Expression Profile