RNA id: XM_026923174.2


Basic Information

Item Value
RNA id XM_026923174.2
length 4250
RNA type mRNA
GC content 0.49
exon number 12
gene id vezt
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 13344744 ~ 13374285 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGATTAGTCTGATTGATTTAATTGGAACCAGGATGTAGACGCGATAAGATGCTTTTTGCTTCTCGGATGAAATGTGGACCGGGGCATTCAGAGCCTGTTCGGCGTTATTTCTAGATCTCTGGTGGGCGAATAGGACGTGCGAGTGTCGATTGATATCCTGTGCGAAATGATGGCGAGTTGGGAAAGGGCTGGAAAAGAAGTGAGAGATGATGTTGAGAACTCTCCTCTGTTCCAGTATTTGCAGGATCTAGGGCACACTGATTTTGAGGCATGTTCACCCATCTcccaggagcaggaggaggaactGAGCTCTGGTGCCCAGGACATCCTTCCCCCTTCCAGACCAGGTGGTATTTGGAGGCTGGCTGAGATCCTGCACTCTCTGAGTCCGTTTCGTCAGAGTGGTGCCCCCCTGCAGCTGGAGCAGCAGCTGGACGCTGCGTTCCGGCAGTACTCCCTGCGCTGTGTTTTGTCTCAGGACGTGCTGTTGCAAGAGGACGTGGAGCTTATTGAGCTGTTAGACCCCAGTGCTCTCTCTCTGGGCTCCACGAGTACTGCCTGCCCGAGTGCCACCTCAGCCCTGCCTGCACCCCGCTACCTCTCCACACCATCGATatgGGATGTCTCTGTACTGGTCGGACTGGTGGCCATCCTGCTCACGGTTTGGTGTTCTTGTCATGAGGATAGACGGGGTCTGCtatggctgtgtgtttgtgcggtgtgtgtcttgtgtgtgcgtCATGGCATTCATCTGTGGCACAAGGCAGCAATGCAGCAGCAGGTTCAGGCTCAAGCTGTCCAGCTGGAGAGTTTAGTGATCAACAGCCGAGCTCTCACCAGCCTGGCACGCAAATCGCTCCGTCTCATCCAGGAGACTGAAGTCATCTCGCGGGGATTCACCCTGGTGAGTGCGGCCTGTCCCTTTAACAGGGCGGGGCATCTGCGCAGCCAGCAGTTAATTGGTTTGAGGAAAGCAGCCTACCAGAGCCTCCGCTGCGCGTTCCGTGCCTCCCGCATCGCCACCTGCATCATGCTTAAATCATTTCCACTCAACTCCGAGATCGACAACGTCACCAACTATGTGTCGACCGTGCCAATCAGAGAACTTGGCCTGGGCCTGGGGGCAGAGCATCTCTCTGATGAGCAGGCACAGGAGCTGACCAATGACTACAGCTTACCTGCTCTCAAATTGCTCTTTCAATTGTGGGTGGGCCAGAGCTCTGAGTTTTTCCGCCGATTGGCTCTGATGCTGTCCTCTGGGAGGGCGGAGCTAGAATCCAAGCCCCGCCTTCTCGCGTACAACAGCGTGGCCACTGTCACTGCCTCCCTTCATCCCTCCCTGGCCTGTTGCCTTGGTGACCTACAGCGCAGCTATGAATTCCATCGATACTTTGAGATGCAGCAGCAGGCGCAGAACTCAGGCCGAGCAAGTCGGGCACGACAGAAATGCAGAGAGCTCAACTCACTGCACACATCCATCCGCAGCCTTCAGCTCCACCTCAGAGCCCTGCTCAGCGAgGTGATCATTCTGGAGGATGAGCTGGAGAAGCTGATGGTTGCTAAGGAGTTAGAGGAGGTGACATGTGCAGGTTACCAGGAGCTCCGTGAGCGCCTGCACCTCCTGCAGCCTCACATGCAGGCTAGCTCCTGCTGCTGGGAGGACATGACTGCTCAGGTGGAGCGCATGCTGCGCAGGGTCACCCAGTGcccaggaAGTGGAGATAGTCCAGAGGAAGCAGCTGGTCCTGCCCCACCTCCTCCTGCCCCCATCTCACATATAGATGACACAGACCCTGTTCCAGAGGAACAGgAATTGGAGGCCTACGTCTCGGACTCGGACTCAGACTCCGAGTGGCGTGGGGCTGTGGACATGCTGTCACCATGGGAACGGGAGCGTCAGCGGCGTGAGAGGGAGGAGTCACGCAGAGTGTTACTTGAGCTTAAATCCGTCCTGGGAATCCGAACTTCGGAAGGAGAGCGAGACAAACgcaagctgctgctgttcagCGACAAAgCTTCGGTGGGTAAGGTTGCCACCGAGACATCAGATCATTACCCAGAATCCTCAGCGAGTCCAGGCTGCACAGACCTTGCAGCATCTGCAAGCAACCACATCTCCCAGCAGCCTTCAGGAGGAGAGGGGGAGGAGTTagaggaaggaggagaagagacggagagagacagTACGGAGGACAGAGAGGCAGACGCGGCTGTGACTGAATTCTGTTGCGGAGATTCTGAAAGCGCTGCAGAAACGCAAGACAAGAGAGGCGAGGCAGAGGGAACGCGCCTCTTCCAATCGGACGGGCTAATGGATGAGGAGGCGGGCCCGGATGGATCACACCCCCTCACTCCCAGAGTCCCCACCCTCTCAGTGATTGACAGACTTACAGAACTGCATGGCTCTGAAGTGCTTAGCATCGGCTCGGCCCTGGCTGCCCAGGTGGCTGCTCGCTcccacaccttcacacacctgCAGGAGTGCACCTACGGGGACtcggatgaggaagaggaggaggaggaggaaggggaAAAGGAAGTAACATCACAGCCAGATGAAATGGAGGCAGCAGAGAAGTGAAGGACAACAAGCTGAACTATTTTAGCATATACAGGTTATTTATTCCCATCTGCcctagatttatttattaagcttGAGGTCAGGACCGCAGCACATATAACTGGTGCGCGAGTGAGTTTAATATGTCCTTCCTTTACGTGCCTCCATGTGTGTTCTTGTTTACACTCTGTCTACTGTCACTTAGTCCACCTGTCCCCTTTTTCTCGCATTATGCCTCAGGTACAGGCTAGCAAATACAGACACGGAATTCTACAGTAATTTGCATCAAATATTaggcttattatttaaatgtgtacagtaatagtTTGGCTACTTATTGTGCCCTAGATAGGTTTTTATTCCTAAACATTACACCCACAGAAAACAGATTCAAGCTGACATTATCATCagcctgtttgtttttgtgttacgCATAAGGTTTGCATTATACCCATTTGATTCAAATGACAAGTCAAGTAGGCTAATAATGTAAtcactcaataataaatataataacttatatAATGATGGTAAGTAACAAACTAAAATCACTGACcctctggctatgcttcacagaccccactgTGAGGACCACTAATGTGTAAGAATGTTCACACTcactttaacatttacattaataatttactaCCCATAATCCATCCGAGTTGGTGTGctgtgcatcagtgtgtgtgttttgttgtaatAGACCTTATACACTGATTATCCTTTAAAGCAATGTGATATAGAAAGAAGCCAGCCACTAGCTTTGAGAAATCTGTTCAGCTCTAATCTTTTCGATGTATGTGGATGTCTCATTGCATTTACAGCTGTAAATCTATGTtaaggatggaaaaaaaagaaaaaaaaattaattcacacAGGATTTCCCTTTACCATAAATGTAGCTGCTCAGCCAAGACATGACTGATGTCTGATGTTTGCTTCTGTTATTCACTGGGGCTACAAGATGTAATGAAATCTTCTATAAGCTCCAGTTAGTATTAGGCAATATTGCTGCCTCGTAGCATAAAGAAGCATGAGTTATTATCTTTATTGTCGAGTTTTTACACTCATTGGTCTTGGCTGATGGGAGTGGGAGTGAGTGTAGCCCATCCTTTTCAAGGTTCagtgtgagatgcttttctgctcaccacaattataAAGAGTTACCGTAACCTTCCTCTCGGCTTTAACCACTCTGGCCGttgtcctctgacctctcttatcaacaaggcctCCAGAACTGACgatcactggatgttttttgttttttgtaccattctgtgtaaactctaaaaactgctgtgtgtgaaaatctcaggagatcagcagtttctcagaccagcccatctgccCCGGTCAaagccactgagatcacatttttctccatcctTATGGTTATGTGCACATGAgcagaagctcttgacctgtatctgcatgattttatgcattgcgctgctgccacatgattggctgatttgaatgaatgcatgaatgagcagattcctattaaagtggccggctAGGTGTATAGTCAGTTTTTAGCCTGTTTGTCTGGCCACTTGAACCGAATGGGTtaaatccaaacctcagtaacttaaaaacaagtaggtttctaaataatgtcaacttgaatctaatggcaattttaatattctgtaagtgtaaagttcagaaataataaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU334237 lncRNA downstream 23330 13320173 ~ 13321414 (-) True G282006
TU334201 lncRNA downstream 59026 13259152 ~ 13285718 (-) True G281981
TU334183 lncRNA downstream 134251 13168675 ~ 13210493 (-) True G281964
XR_003403338.2 lncRNA downstream 197386 13146282 ~ 13147358 (-) True LOC113532391
TU333645 lncRNA downstream 867115 12476264 ~ 12477629 (-) True G281527
TU334285 lncRNA upstream 43110 13407613 ~ 13409326 (-) True G282047
TU334298 lncRNA upstream 63154 13427657 ~ 13427872 (-) True G282060
TU334376 lncRNA upstream 194756 13559259 ~ 13563946 (-) True G282116
XR_004579994.1 lncRNA upstream 207297 13571800 ~ 13573687 (-) True LOC117599591
TU334388 lncRNA upstream 209044 13573547 ~ 13575375 (-) False LOC117599591
XM_026922690.2 mRNA downstream 6371 13325401 ~ 13338373 (-) True metap2a
XM_026923473.2 mRNA downstream 34481 13304454 ~ 13310263 (-) True depdc4
XM_034313190.1 mRNA downstream 40465 13276926 ~ 13304279 (-) False scyl2
XM_026923198.2 mRNA upstream 101699 13466202 ~ 13501821 (-) True lamb1b
XM_026923829.2 mRNA upstream 144729 13509232 ~ 13522323 (-) True acot18
XM_026923828.2 mRNA upstream 144729 13509232 ~ 13522319 (-) False acot18
XM_026923211.2 mRNA upstream 168416 13532919 ~ 13549503 (-) False LOC113532074
XM_026923212.2 mRNA upstream 168416 13532919 ~ 13549503 (-) False LOC113532074
XR_003403346.2 other downstream 763681 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 1684417 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 1756720 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 2085352 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 2337601 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU335292 other upstream 1809845 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 3594021 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 3739062 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 4614282 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 4614282 17978785 ~ 17980246 (-) False LOC113532261

Expression Profile