RNA id: XM_026923199.2


Basic Information

Item Value
RNA id XM_026923199.2
length 2168
RNA type mRNA
GC content 0.50
exon number 19
gene id lta4h
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 19140445 ~ 19161281 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagatcagTGGCTAGTGTGTGATCATGGCTCCTGTGTCAGACCCctgctctttctcttctttctctaaGTGTGTGACTCGCCATGTGAACGTGTCCTATCATGTGGACTTCGACAGTCATGTGCTGAAAGGGAAGGTGTCTCTCACAGTGGAGGTGCTGCAGGACAAATTCTCTgatctgACTCTCGACACGAATGACCTAAAGATCTTCAAGGTATCAGCCAATGGCCAGGCTGCCAAGTTTACCCTGGGAGAGAAGCAGGGTTATAAAGGCAGCCCTCTGGAGATTAGCCTGCCCTTTGAGCTCTCACGCGGGCAGCACGTGATTGTGGAGATCGAGTTTGAGACGTCTCCAAAGGCCTCGGCTCTGCAGTGGCTCACTCCTGCACAAACCGCTGGGAAAAAGCACCCCTACCTTTTCAGCCAGTGCCAGGCTACTCACTGCAGGTCTATGCTGCCCTGCCAGGACACTCCATCAGTGAAACACACCTACTATTCCCAGGTGTCAGTGCCCAAAGAGCTGATAGCACTTATGAGCGCAGTGCGTGATGGACAGGAACCAGATCCGAGTGACAGCAACCGAATCATTTACCGCTTCCGACAACCGGTGCCCATGCCTTCTTACCTTATTGCGATTGTGGTGGGAGCCCTAGAGAGCAGGGAGATCGGGCCCAGGTCCAGAGTTTGGTCAGAGAAGGAATATGTGGACCAGGCTGCATTTGAGTTCTCTGAAactgagAGGATGCTGAAGATTGCTGAGAGTCTTGCAGGACCGTATGTATGGGGACACTATGATATGCTGGTGCTTCCTCCGTCTTTCCCCTACGGTGGCATGGAGAACCCCTGCCTCACCTTTGCGACACCTACTCTACTGGCTGGAGACCGGTCCCTTGCTTCTGTCATTGCTCATGAGATTTCTCACAGCTGGACTGGAAACCTGGTGACTAATAAAACCTGGGAGCATTACTGGTTGAATGAAGGACACACTGTATATCTGGAGAGAATGATTGGCAGGGTGATGGAAGGAGAGCAGTTCAGGCAGTTTAAAGCGATGGGAGGTTGGAAAGAGCTACAGGAGTCTGTGAACCATTTCGGAGCAAATAATGTCAATACTAACCTGGTGCCAAGCCTGGAAGGTGTTGACCCTGATGAATGTTTCTCCTCTGTGCCTTATGAGAAAGGTTTCGCTCTCCTCTACCACCTGGAAGAGTTGATGGGAGGCCCAGAGGTGTTTATGGGCTTTGTGAAGTCCTACATCCAGATGTTTGCCTACAGCAGCGTGACAACAGATGACTGGAAAAACTACCTTTACACCTACTTCAAAGACAAGGTGGACATCTTAAATAAAGTGGACTGGAATGCATGGATGCACACTCCAGGAATGGCCCCTGTCAAGCCAGAGTATGACACCACTCTGGCAGATGCGTGCACTGCACTGGCCCAGCGATGGGTGAAGGCTAAAGACGCTGATCTGTCAGGCTTCAGTGAGGCTGATATAAAGCAGTTCTCCTCTCATCAGCTGATTGAGTTCGTGGCTGTGCTGCTACAAGAGgaccctctccctgtctctcatGTTAAGAGAATGCAGGAGGTGTATAACTTCAACAGTGTCCGGAATGCTGAGATCCGTTTCAGGTGGCTGCGTTTGTGTGTCAGAGCTCAGTGGGAAGAGGCCGTTCCTCTGGCTCTGAAGATGGCCACAGAGCAAGGCAGGATGAAGTTCACACGCCCGCTCTTCAGgGAGGTGTACAATTTTCCCAAGTTCAGTGATGAAGCTGTAAAGACCTTCAAGGAGCATAGTGCTGCAATGCACCCCGTCACTGCCACCCTGGTGGCTAAGGACCTGAAAATTGCCCAGACGAGTAGCACAGGCTTCTAACCCTGCTGCCCCGATTAAGCCTGTGCTGCGTGACCTAGGCCTGAGAGTTGTAGTTCTTCTGTGCAGCAGACAGATTTGTGTGGCTTGACCAGTTCAATATTTTATGTCTTAATAGAGATCTTTATCTCAGGGCAAGAGGGGAAAATAAAGCTCCTCCAAATTTCACCATCACATTTGCCTGCTTTAATCAGCTTGTCTTAAAGGAAAGGTTTTCTCATAGAGCATCACGCTGAGCAATAAACTCTTCAACCAACTTC

Function

GO:

id name namespace
GO:0006954 inflammatory response biological_process
GO:0019370 leukotriene biosynthetic process biological_process
GO:0006508 proteolysis biological_process
GO:0004463 leukotriene-A4 hydrolase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K01254 LTA4H; leukotriene-A4 hydrolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU337468 lncRNA downstream 202350 18868057 ~ 18938095 (-) False G284885
TU337467 lncRNA downstream 202350 18934868 ~ 18938095 (-) True G284885
TU337489 lncRNA downstream 217548 18918456 ~ 18922897 (-) False LOC117599567
XR_004579967.1 lncRNA downstream 217575 18918396 ~ 18922870 (-) True LOC117599567
TU337464 lncRNA downstream 278293 18861845 ~ 18862152 (-) True G284882
TU337873 lncRNA upstream 127310 19288591 ~ 19290806 (-) True G285245
TU337891 lncRNA upstream 195279 19356560 ~ 19357907 (-) False LOC113532309
XR_003403326.2 lncRNA upstream 195693 19356974 ~ 19385863 (-) True LOC113532309
XR_003403325.2 lncRNA upstream 208046 19369327 ~ 19385863 (-) False LOC113532309
TU337928 lncRNA upstream 243798 19405079 ~ 19405317 (-) True G285287
XM_026922669.2 mRNA downstream 33019 19095392 ~ 19107426 (-) False tfec
XM_026922670.2 mRNA downstream 35094 19095397 ~ 19105351 (-) False tfec
XM_034313021.1 mRNA downstream 37368 19095396 ~ 19103077 (-) False tfec
XM_034313020.1 mRNA downstream 37368 19095396 ~ 19103077 (-) True tfec
XM_026922985.2 mRNA downstream 352548 18781747 ~ 18787897 (-) True ppp1r3aa
XM_026923684.2 mRNA upstream 29215 19190496 ~ 19247363 (-) True cdk17
XM_026923685.2 mRNA upstream 29215 19190496 ~ 19231087 (-) False cdk17
XM_034313075.1 mRNA upstream 91542 19252823 ~ 19254197 (-) True LOC117599463
XM_034313076.1 mRNA upstream 99432 19260713 ~ 19262044 (-) True LOC117599464
XM_034313291.1 mRNA upstream 110314 19271595 ~ 19272694 (-) True LOC117599574
trnae-cuc_38 other downstream 928052 18212322 ~ 18212393 (-) True trnae-cuc_38
XR_003403330.2 other downstream 952447 18156824 ~ 18187998 (-) True cald1a
trnaa-ugc_14 other downstream 1047901 18092473 ~ 18092544 (-) False trnaa-ugc_14
trnaa-ugc_13 other downstream 1049823 18090551 ~ 18090622 (-) True trnaa-ugc_13
trnaa-ugc_11 other downstream 1056591 18083783 ~ 18083854 (-) True trnaa-ugc_11
TU338301 other upstream 1151786 20313067 ~ 20320050 (-) True G285607
trnaa-ugc_16 other upstream 1261120 20422401 ~ 20422472 (-) True trnaa-ugc_16
XR_004579970.1 other upstream 2299545 21460826 ~ 21471100 (-) False LOC113544587
XR_004579971.1 other upstream 2299545 21460826 ~ 21471056 (-) True LOC113544587
XR_003404518.2 other upstream 2299546 21460827 ~ 21471100 (-) False LOC113544587

Expression Profile