RNA id: XM_026923201.2


Basic Information

Item Value
RNA id XM_026923201.2
length 5077
RNA type mRNA
GC content 0.44
exon number 30
gene id ptprz1b
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 10470536 ~ 10512149 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTGGAGTGTTGGCAGTGTACAGTGCAGGGTAGGATGTGGCTGTGTGTATGACCCTGTTGGCTCACCATATCGGGGACACTGTGGATTGCTGTGTGCAGGGGAATACTGAGTGAGAGCATCGACATGGACCTTCTGTAGCATCCTCACATGCAGCACGCCGTTTCTGCTCTAAGGGGTTTCACTCCCGACTTCAAACCCAATCGCTCGACAATGTCTGGGATAAAAATCAGCTTCTGCTTTGTACTCTCTCAGCTGTGCATCCTGTGTTCAGCAGTGGGCCTAAGCAACAAATACCTGAGAGACCAGCACAGGTTTACAGAGGACGTGGACTGGTCTTATACAGGAAGTTTGAACCAGCAGCACTGGGTAAAGAAGTACCACTCTTGCAATGGTGCCAGACAGTCACCCATCAACATTGACGAGAGCTTCACCCAGGTTCAAGTGCAGTACCAGGATTTGCAGCTAGAGAACTGGGACCAGCTCATGTCAGATTCTACTATCACCAACGATGGAAAAACAGTGGTTATCAGTGTGAATGGACAGTACTACATCAGTGGAGGAGGACTCAGGTCACGGTTCAAAGTAGCCAGGATAACGTTCCACTGGGGCCGCTGCAACGCCTCATCAGATGGTTCAGAACACAGCCTTAATGGCTACAAGTTTCCTCTAGAGATGCAGATTTACTGTTATGAGGAAAATGAGTTTGAATCTATAGATGATGCTCTGAGGGGTAATGGCAGAATCACTGCATTGGCCGTACTGTTTGAGGAGAGCGTTGATGATAATGAGAACTTTGCTGCCTTAATCGATGGGGTCAACAGTGTCAGTCGATATgGTAAAAGTAGTGTGCTTGAGGCCTTTCCTCTGCTTGGTCTACTGCCTGAGTCGACAGCAAAATATTTCATCTACAATGGCTCCCTCACCACGCCACCCTGCACAGAGACAGTGAAGTGGATTGTGTTCAGAGACACAGTGCCAATTTCTGAACCGCAGctGGAGGTGTTCTGTGAGGTGATGACCATGCAGCAGGCTGGATATGTAATGCTGACAGATTACCTGCAGAACAACTACAGGGAGCAACAGCAGCAGTTTCTGGGACAGGTTTTCTCATCTTACACTGGCACAGAAGAAGTCCTTGCTCCTAtgtgtagctcAGAGCCAGAAAATGTTCAGGCGGATCCCCAGAATTACACCAGCATAATGGTGACATGGGAAAGGCCACGTGCTGTCTATGAAACCAACATTGAAAGATATTCTGTCACCTACCAGAGTCTACAGGGCAAGAATGCTCAGAAACGACAGTACCTGACAGATGGGGATCAAGATGTTGGAGCCATTATCCACAACTTGCTGGCCAATAACAGCTATGTTGTCCAAGTGGTGGCGCTGTGCACCAATGGCCTGACTGGTCGCATGAGTGACCAAGTTATAGTAGACATGCCTCTGGAAGACCCTGAAAATGATCCTGATCCTTCTGTTGTTTCAACACAATTAGAAGAATTTACTGAGgAGACCTCTCAGCCCTCTTTATTTACGAGTAGGACAAGCAGCAaaccctgggttttgcctggtCGTACCTCTTCCTCCAAGAGCTCCATATATGAGACCACCTCTACCAATCACCCAGATTTCCTGTTTCCGGCTATCAAGGCAACAACATCTTCTGAGCAACAGTGGATCACAGTGGAATCTCGATCTTTTTCACCTGATCAGGCAAGAAGCCATGTCAAGCGACCTAGCAGCCGCATTTTGCCAGAGGACGAAGATACCATGCTGGTAACTGACTACGAGGGCTTGAAATCTAGGACAACGGTGTCCAGTCCAAATGAAGAGCAGCTCAGTCTGCCTACTCTCCTAACCAGAGGTGTTCTGGATCAGGACAAGGGCCAAGTTTGGATGAGCAAGCCTAGCATCACTTCAGTGACCTCAGCTCCGAATGCCGAGAGCAGTACTATATACGTCACCAGTAACACTttgttagtctcagtgaagaatGTTAATGAACCCACTCGGCCATTGTTTAATGAGGCAAGCAACAGCAGTCCACAGTCTCGTGTGGGAATGGtaggagggacagagagagaaaagaggacaGTGGTGCCGTTAGCAGTGGTGTCTACCCTTGCTGCAATATGTCTGCTGGTGCTGATCAGCATTCTTATCTATTGGAGgaaGTGCTTTCAAACAACACATCTTTATGTAGAGGACAAAGCATCTCCCAGAGTCGTAACAGCTCCATCAACACCTCTGCTCCTGAATACagAAGAACATGCAGCCCTTCCAGTGAAAGAATTTGTGAAGCACGTCACGGACCTTCACTCCAACAACACGTTCTCAAAGGAGTTTGAGAGCTTGAAAGAGTCTTACGAGGAAATTCAGTCCTGCACTGTGGACATGGGTATTACGACAGACAGTTCAAACCACCCAGACAACAAGTGCAAGAACAGATACATCAACATCCTGGCCTatGATCACAGTCGAGTCAAGCTGAATCATAATGtagagaaagatggaaagacagGAGACTATATAAATGCCAGTTATGTGGATGGCTACAAACACCCAAAAGCTTACATAGCAGCCCAGGGTCCACTGAAGACAAGCCTGGAAGACTTCTGGAGGATGGTGTGGGAGCAGAACGTTAGCGTCATTGTCATGATAACCAACTTGTTGGAGAAGGGTCGGAGAAAATGTGACCAGTACTGGCCTATGGAAAACCAGGAAGAGTATGGGAGTTTTCTTGTCACACTGAAAAGTACCAAAACATTGGCTTACTACACCAAGCGGACCTTCACCCTGagaaacatcaacaacaaaaagGGCTCTCTGAAGAGTCGCAGTCAGGAGAGAACCATTGATCAGTACCATTACACTCAGTGGCCAGATATGGGCGTTCCTGAGTACACACTTCCAGTGCTCAAATTTGTACAGAAGTCGTCTGAAACATGGAGCGCTGACTCGGGCCCTGTGGTGGTGCACTGCAGTGCTGGAGTGGGACGAACAGGAACTTACATTGTGATAGACAGCATGCTGAAGCAGATAAAGGCTGAGGGGACGGTGAACATCATGGGTTTCCTGAAGCACATCCGCACCCAGAGGAACTATCTGGTGCAGACTGAGgaacaATATGTTTTCATTCACAATGTGTTAGTAGAGGCCATCAGGAGTAAAGAGACACAAGTATCAGCCAGCCACATTCATGCTTACGTCTCTGATCTTCTCACTCCTGGACCAAAAGGCAAGACTCATCTAGAGAAACAGTTTAAGctgATCAGCCAGAAGTGTGCAATTCAGGATGACTATGTGACAGCACTGAAAGAGTGCAACATACCAAAGAACAGGACTTCTGCCCTCATGCCTGTGGAAAGATCCAGAGTAAGTCTGTCTTCGACTGTGGCAGATTCTTCAGACTACATTAATGCTTCTTACATCATGGGTTACCATCAAAGCTGTGAATTCATCATCACCCAGAGACCCCTGTCCAGCACTATACAAGACTTTTGGAGGATGATCTGGGACCATAATGCTCAGATCATCATTTCTCTGCCAGATACCCAGAACCTGAGTGAagaggaggagtgtgtttacTGGCCCACTAAAGAGCAGCCAATCAGCTGTGATACCTTTACAGTGACCCTGGCAGGGGAGGATCAGATTTGTCTGTCTTATGAAGAGTCTCTGGTGGTGCATGACTTTATTTTGGAAGCCTTAAAAGATGACTATGTGCTGGAGGTTCGCTGCTACCAGGCTCCACATTGGCCCAATCCAGACAGACCCATCAGTAATGCCTTCGAGCTCATTAACATCATCAGGGAAGAGAGTGCACATCGAGAGGGTGCTATTATGGTCCATGATGGATATGGAGGCTCCAGTGCTGGGATACTGTGTTCCCTGATCACCCTGATTAATCAGCTAGAGGAGGAGAACATGGTGGATGTCTATCTGACAGCAAGGATGACCAACTTGATGAGACCAGGAGTATTTAGTGATATTGAGCAGTATCAGTTTCTTTACAAAGCTATATTAAGCTTGGTGAGCACCAAGGAAGATGAGAAAACGCTTCATTCCACGGAGAACAATGGCAACATCCCAGCTGGCTCAGCAAACATCACAGAAAGTCTTGAGTCTcttatgtaatgtaaataagtCATATGTTTTTGAGGTTTGCAGATCTAAAGAGATGACATAATTTGCCTTTGTTTACATCAAGGTAGATGTAAAGATGTGGCCATTTAACCCCCCAcccctgaaaagaaaaaaaataaataaatagtctcTGTATGGGACATTCTGGTACAGGATGTGATTTGGTCTTTAATcgtgcctttttttaaaacgtGTACTTTATAAAGCGATTTGATATGTTATTGTTGGAACTAATGCCAAAATTTCTACTCTTTTCAGAATGTTGACTGCCGCATTGCTAGTGATGTCTATTTAGTTgagttaaaatgtaatatttataagtaAAAAGATATAGACAgattttataaacaaatgtaGCTCAAGTACATTGTTACACAAAGAAACATTTCAGATATATGactacacactgatcacatcAACAGACCAAACCctatttgtataaataaattttctATTTTACTACTTTCGTTTGACATAAGAGTTTaaccatgtttttttgtattattatttaggaTATATGTGTATACAGTTAAGTGACAgtgctgttttattccttgtctGTGTTTCGTTACTTTGACGCATGAATTTATGTAGATGTAAAGCAACAATTAATGTCTGTGAACAATGCCTGTAAGTTTGTTATTGAGTTTATGAGTGTCTAACTGCTGATTAAGTGACTATACTGTGTATTTCTTTAAGTGAGACAGGAAGAAACACTACAACCTCTAAACTTGCCACTTGCACGTATTGTGTAAGCATCTCAATGTAATTGTCACATACATCTTAACATGTAAATCAGAACAACAGAGAACCCAGTATTAACAAACATTCCACTTTCCCCTCAAAGTAAAATGAGGTAACCTTATTCTGTTTGTATTCTGCTGGGGTTTGGTGATTTAGTTGGTTTTATATAAAAGATGACTTACAGAA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K08114 PTPRZ; receptor-type tyrosine-protein phosphatase zeta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332265 lncRNA downstream 161 10468686 ~ 10470375 (-) True G280360
TU332320 lncRNA downstream 4906 10463954 ~ 10465630 (-) True G280398
TU332306 lncRNA downstream 34690 10430631 ~ 10435846 (-) True G280389
XR_004579870.1 lncRNA downstream 174338 10255972 ~ 10296198 (-) True LOC113532274
TU332242 lncRNA downstream 174415 10295004 ~ 10296121 (-) False LOC113532274
TU332463 lncRNA upstream 264616 10776763 ~ 10777897 (-) True G280527
TU332558 lncRNA upstream 271214 10783361 ~ 10784293 (-) True G280615
TU332595 lncRNA upstream 394026 10906173 ~ 10908630 (-) True G280640
TU332613 lncRNA upstream 418591 10930738 ~ 10930980 (-) True G280652
TU332738 lncRNA upstream 567021 11079168 ~ 11079487 (-) False sobpb
XM_034313381.1 mRNA downstream 9490 10451578 ~ 10461046 (-) True asb15b
XM_026922569.2 mRNA downstream 19634 10447665 ~ 10450902 (-) False lmod2b
XM_026922568.2 mRNA downstream 19641 10447665 ~ 10450895 (-) True lmod2b
XM_026922867.2 mRNA downstream 454746 10007198 ~ 10015790 (-) True pik3cg
XM_026922702.2 mRNA upstream 20634 10532781 ~ 10548341 (-) True slc13a4
XM_026923330.2 mRNA upstream 106771 10618918 ~ 10629763 (-) False LOC113532144
XM_026923329.2 mRNA upstream 106771 10618918 ~ 10629763 (-) True LOC113532144
XM_026922785.2 mRNA upstream 272181 10784328 ~ 10828385 (-) True ptprb
XM_026923231.2 mRNA upstream 318739 10830886 ~ 10885436 (-) False ptprr
TU332243 other downstream 174415 10269757 ~ 10296121 (-) False LOC113532274
trnay-gua_2 other downstream 847917 9622533 ~ 9622619 (-) True trnay-gua_2
TU331209 other downstream 1261973 9207351 ~ 9208563 (-) True G279415
XR_003403340.2 other downstream 1661198 8809220 ~ 8809338 (-) True LOC113532431
TU330637 other downstream 2250856 8218561 ~ 8219680 (-) True G278912
XR_004579975.1 other upstream 482958 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332827 other upstream 726788 11238935 ~ 11259392 (-) True vegfab
TU333108 other upstream 1074157 11586304 ~ 11588024 (-) True G281074
TU333129 other upstream 1145743 11657890 ~ 11660327 (-) True G281092
XR_003403346.2 other upstream 2068776 12580923 ~ 12581063 (-) True LOC113532438

Expression Profile