RNA id: XM_026923206.2


Basic Information

Item Value
RNA id XM_026923206.2
length 2893
RNA type mRNA
GC content 0.46
exon number 21
gene id tbk1
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 11773891 ~ 11795925 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaaaaaaaaacaccatgtcGAATTGGCCGCATGAAGTTTTTTGTTGGTTGTGTTGGGAATTTCCCACAGTCGTGACGTCACTCTGTAACCCAATCCACCAGCCTGGGCTTTGAATCTCTTCTTTTATCACTTAATCTTTTATCTTCTTTTATCACTTAGCATATCTGAAGCACAATCAGTTCTGATCTGCTCATATTAATTAACTAGCCTAGTAAGCTGAAAGAGTAAGAAATGTGGTGAAAAGACATCAAGAAACTGCTAGAAGGTTCCTCTGAAGAAGATCATCATGCAGAGTACGACAAACTACCTGTGGTTGATCTCGGACCTGCTGGGCCAAGGGGCCACAGCCAACGTGTACCGTGGCAGGCACAAGAAAACGGGTGACCTCTATGCCGTCAAGGTCTTCAACAACCTGAGCTTCCTGCGGCCTCTGGACGTGCAGATGAGAGAGTTTGAGGTGCTAAAGAAACTCAACCACAAGAACATCGTCAAGCTTTTCGCCGTTGAGGAGGAGTCAAACACACGTCACAAGGTCTTGGTTATGGAATACTGTCCATATGGCAGTCTCTACACAGTACTGGAGGAGCCATCTAATGCTTACGGTCTCCCTGAAGATGAGTTCCTCATCGTGCTGCAGGATGTTGTGGCTGGAATGAACCACCTGCGGGAGTACGGAATAGTCCACCGAGACATTAAGCCAGGGAACATCATGCGAGTAATTGGAGAAGATGGACGCTCTGTATACAAACTTACAGATTTCGGGGCGGCGAGAGAGCTAGAAGATGATGAACAATTTGTGTCATTGTACGGAACAGAGGAGTACTTGcatCCAGACATGTATGAGCGAGCTGTGTTGAGAAAAGATCACCAGAAGAAGTACGGAGCCACAGTGGACCTATGGAGCATTGGAGTCACGTTCTACCACGCAGCTACTGGCAGCCTGCCGTTCCGACCTTTCGAAGGACCTCGAAGGAACAAGGAAGTTATGTATAAGATTATTACCGAGAAGCCCTCAGGAGCCATCTCAGGACAGCAGAAGTTTGAGAATGGCAAGATCGAGTGGAGCACAGAGATGCCAGTGTCCTGCAGCCTCTCCAAAGGCCTACAAAGTCTGCTAACCCCAGTTCTGGCCAACATATTGGAGGCAGACCAGGAGAAGTGCTGGGGATTTGACCAGTTCTTTGCAGAGACGAGCGACATCCTGCACCGCACAGTGGTTTACGTCTTCAGCCTGCAGCAAGCCACGCTACACCACGTCTACATCCACACGTATAACACagcCACACTTTTTCAGGAACTGCTCTTCAGACGCACCAACATCAGCCCTCCCAATCAGGAGCTCCTGTATGAGGGCCGACACCTCATGCTGGACCCCAACAGACAGGCGCAGACATTCCCACGTACCAGCAGGGACAATCCCATCATGCTCCTCAGCAGAGAACTTGTCAACACCGTTGGGCTTATCTTTGAAGACCcaagcCCTCCTAAAGTGCAGCCACGGTACGATTTGGACTTGGATGCCAGCTATGCTAAGACATTTGCCGGTGACGTGGGCCACCTGTGGAAAACCTCTGAGTCGTTACTCGTCTATCAGGAGTTGGTGAGGAAAGGAGTGAGGGGTCTCATagAGTTGATGAAAGAGGACTTCAATGAGGCGGCACATAAGAAAGCTGAGGTTTTCCACATGTGTAACCACTGCAATCAAACCCTGGAGAAGACTGAAAAGCTatGTGCAACTTTAATGCAGGGAAATATGTTATCAGCCGAATATGATGAAATCCTGGACTTACACAAGAAAGTGATGAGACTGTCTAACTCACTAAGCTCCATGGATCAGACCATGCAAGACCTCAAAAACAAATTCCTTCCTGGAGGAATGCTGACAGATACATGGACACAGCAAGTGGGCACACACCCTGAAGACAGAAACGTGGAGAAAATCAAAGTTCTTCTTGACGCCATTACAGCCATCTATCAGCAGTTCAAGAAGGACAAAGCTGAACGACgCCTACCTTACAATGAAGAACAAATCCACAAATTCGACAAGCAGAAGCTGGTGTTTCATGCCACCAAAGCCCGTGCCCTGTTCACAGACGAGTGTGCAATGAAGTATCGGCTCTTCATCTCCAAGAGCGAGGAGTGGATGAGGAAGGTGCATCAAGTTAGAAAGCAGCTGCTGTCACTGAACAAACAGTTTCTCAatatggaacaggaagtgaccgTGATCATGCAGCGTGTGTACAAGattcAGGAACAGCTCCCACAGAAGATCATGCCCATTGCGTCAAGTGGCATCAAGCCCCAGGCTTACCTCAGCCAGAGCACTCTCGTGGAAATGACAGCgggGATGAAGAAATTGAAagaggagatggaaggagtaGTCAAAGAACTGGCAGAAAACAATCTCTTTCTGGAGAGGTTTGGCACTCTGACAGTAGATGGTGGGCTGAGAAATGTGGACAGAATCTGAGAGCACAGCACGGCTACAAGACAGCACTGTTTAAAGAAATAGttcagacaaaaatgaaaatggtgtGCATTGCATTTTTGGttaaactattcctttaaagcCAAGGTTTATTTTGAAGGGATAAATAAGATTGccaaatatatatttctgtatatatgttaatgtaaatacTGATCATCTagagagattttatttcactgtctttccttttcttaATTATATCTGTAAGTTAAATAAGAGATGCCTGCTTTTAAGCCTGATGACCTGCTTATCTTGACGTCCATCCATCTGTGCTTGTACccagttcatttttttccctgcactTAATATTTCTAAGGCGCATACAACCTTCGGATAATTAGACTGTACTGTATTCGTCTCTGAATGCTGCACATGTGCAACATTAAAGACTGCAAACCTGc

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K05410 TBK1; TANK-binding kinase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333155 lncRNA downstream 20999 11739730 ~ 11752892 (-) False dusp16
TU333143 lncRNA downstream 62907 11707690 ~ 11710984 (-) True G281102
TU333109 lncRNA downstream 184204 11589003 ~ 11589687 (-) True G281075
TU333104 lncRNA downstream 190254 11583393 ~ 11583637 (-) True G281070
TU333091 lncRNA downstream 211827 11561725 ~ 11562064 (-) True G281057
TU333441 lncRNA upstream 237682 12033096 ~ 12036362 (-) True G281362
TU333459 lncRNA upstream 298443 12093857 ~ 12094059 (-) True G281373
TU333565 lncRNA upstream 455900 12251314 ~ 12254155 (-) True G281455
TU333597 lncRNA upstream 573545 12368959 ~ 12369265 (-) True G281486
TU333624 lncRNA upstream 662149 12457563 ~ 12459092 (-) True G281510
XM_026923546.2 mRNA downstream 4972 11760781 ~ 11768919 (-) False gpr19
XM_026923545.2 mRNA downstream 4973 11760781 ~ 11768918 (-) True gpr19
XM_034313339.1 mRNA downstream 7482 11760781 ~ 11766409 (-) False gpr19
XM_026922860.2 mRNA downstream 20978 11721063 ~ 11752913 (-) True dusp16
XM_026922859.2 mRNA downstream 26690 11723856 ~ 11747201 (-) False dusp16
XM_026923422.2 mRNA upstream 70378 11865792 ~ 11925507 (-) False ptpro
XM_026923424.2 mRNA upstream 70378 11865792 ~ 11925506 (-) False ptpro
XM_026923423.2 mRNA upstream 70378 11865792 ~ 11925506 (-) False ptpro
XM_026923421.2 mRNA upstream 70378 11865792 ~ 11925506 (-) True ptpro
XM_026922786.2 mRNA upstream 193730 11989144 ~ 12081771 (-) True syn3
TU333129 other downstream 113564 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 185867 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 514499 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 766748 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332243 other downstream 1477770 10269757 ~ 10296121 (-) False LOC113532274
XR_003403346.2 other upstream 785509 12580923 ~ 12581063 (-) True LOC113532438
TU335292 other upstream 3378934 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 5163110 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 5308151 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 6183371 17978785 ~ 17980246 (-) False LOC113532261

Expression Profile