RNA id: XM_026923210.2


Basic Information

Item Value
RNA id XM_026923210.2
length 1855
RNA type mRNA
GC content 0.43
exon number 9
gene id LOC113532074
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 13532919 ~ 13549503 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGTCAAGTGTTAGATTATCCCGTCtgccaagtgtgaaaactggTGATGCGGATTTCTGCCATTTGacttgttattttattgtaagGTTTGGGCAGTGGAGGAGAAGGAGGGGTTTGTCAACGGAAGACGAAGTTTTTCAGGTTTTCtgaatctgaaaaatgaaaatcgAAAGTCAGAATGACATGCGATACACCACACGGAAACTTCTGCGCGAACTCACAACGGGTTTGATTTCACACTAGGctactaataattattaaatcaaaaaaaaaaaaaaggaagtaaaacCCTCGCAAGAGATGGAAAAGCGCGCTACGCAGCGCCTTTACGGTAAAAACTGTGCGTGACGTGACGTGAGCGCTAACGGAAGCCGTGTGTTTGTGCTCCTGGCTCAACAATAAGTGCTGCGGTCGGCTTAGCATTTAAGCGTCTCACCTTCAAACAGAAAGTGAAAGTTTTTCTTGGCTAGTCAGGAAGGAAACCCCGACGACAGACAGTGACTGCTGCATCTGGGTAGTCCTTAAAATGCGTGTACAGCTCAAGCAGGTCAGTCAGCCTCGGACACCCAGGACGCACTGGATATGCGCGCGGCGACCCTAACTTTCCTTTTCATCATCTCTGAATACTCCACCATCACAGGAGGAGATGgAAATTGTGGGGCTCCTCCAGAGATTGCAAATGCagagaaagtaaaaaatatcACAAGTCCCAAGTTCCGCATGACGTGTAAAGAAGGATACCTGAGAGCAGCTGGAACTTCCAGCCtctttaaatgtagaaataactCATGGGATAACAGTCCTCCTCTAGTATGCAAGCGTCGTCCATTACCGCCAAatGTAACCCAGCTGATTCACACTTCTAGTTCAACTGTAACTCCGTCAATGTCCAGTCCAACACCGAAGACATATAACGTGACTGCATCACCAGGAAAACACACTTCCACAACATCTGGGAAAATTGTcttcacagcaacacacacagcttccaCAACATCATGGACATCCCGCCAAACCTCTCAGAGGACCACAACAATGGAGGAGACATCTGTCACCACATCAATTACGGCTAGAATTACAGCTTCGTCCACgactgagaaagaaaatatgatcACAATGTCCTCACATTCCTCTAGCAGCTTCTCTCCCACAAGCACTGGAGACATTGGTGCTTTGTCTAATACAGCCACAAAGGGCATCACTGCAGGGATTTTAATAGTTGTAATTATTGCTGGATTGGCAGCTACAGTAGCCGTTCTTTTTTGGCGTCGACGTTCAAAGCTACCTGGTGGACATTCTGTAGAAATGATGACCCAGAATTCTGGCTCAGATCAGCCCTTAATGAAGCCGCACACCTTCACAAGCAGCTGTCCTCCAGACCCTGTTACACCTCCAGTCACTCCTTATAAAGACTCTTCCGGGAGCACATATATTAATGCTCCTCTTTCTGCTTAAAATGCTTACCAGGGCAAgttaaatagaaaatatttcatgtgTGGACAACAGCATTATGATCAAAATGCTATGTTTACAATGAAAATGCAGCAGACAATCCTGAAACAGTGAATccaagacaagaaaaaaaaatccttctaaACATCCTTCATTGTAATGGCCAGTTTTATTCTAGTATTTTCTAGCTCTATAGCAATATTTAGATCATCAGACCCACTTTTGTGCATTTCTACAGAACTTCAGCTGCATTTGCTTTATCTGCGTTGCATGACACTTGTATGTGCTCTCAGTATCTTTTCACTTAAAAAGTGCAGAAATGGCCTTAAATCTAAGTTCTTTTACAGACAGTTCGTGTGTTTGTTATTACTTTCACACAatattaaagttttttatttattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU334298 lncRNA downstream 105047 13427657 ~ 13427872 (-) True G282060
TU334285 lncRNA downstream 123593 13407613 ~ 13409326 (-) True G282047
TU334236 lncRNA downstream 159871 13320173 ~ 13373048 (-) False G282006
TU334237 lncRNA downstream 211505 13320173 ~ 13321414 (-) True G282006
TU334201 lncRNA downstream 247201 13259152 ~ 13285718 (-) True G281981
TU334376 lncRNA upstream 9756 13559259 ~ 13563946 (-) True G282116
XR_004579994.1 lncRNA upstream 22297 13571800 ~ 13573687 (-) True LOC117599591
TU334388 lncRNA upstream 24044 13573547 ~ 13575375 (-) False LOC117599591
TU334559 lncRNA upstream 283745 13833248 ~ 13837431 (-) True G282279
TU334567 lncRNA upstream 289155 13838658 ~ 13840594 (-) True G282283
XM_026923829.2 mRNA downstream 10596 13509232 ~ 13522323 (-) True acot18
XM_026923828.2 mRNA downstream 10600 13509232 ~ 13522319 (-) False acot18
XM_026923198.2 mRNA downstream 31098 13466202 ~ 13501821 (-) True lamb1b
XM_034313097.1 mRNA downstream 158634 13344744 ~ 13374285 (-) False vezt
XM_026923669.2 mRNA upstream 71794 13621297 ~ 13648197 (-) True prkcq
XM_026923135.2 mRNA upstream 115820 13665323 ~ 13724630 (-) False sfmbt2
XM_026923134.2 mRNA upstream 115820 13665323 ~ 13724630 (-) True sfmbt2
XM_034313246.1 mRNA upstream 115820 13665323 ~ 13724629 (-) False sfmbt2
XM_034313141.1 mRNA upstream 202020 13751523 ~ 13763790 (-) True LOC117599536
XR_003403346.2 other downstream 951856 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 1872592 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 1944895 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 2273527 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 2525776 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU335292 other upstream 1624845 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 3409021 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 3554062 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 4429282 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 4429282 17978785 ~ 17980246 (-) False LOC113532261

Expression Profile