RNA id: XM_026923216.2


Basic Information

Item Value
RNA id XM_026923216.2
length 3661
RNA type mRNA
GC content 0.44
exon number 10
gene id kiaa0930
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 17062768 ~ 17099329 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTTTGTGTTGAAGAAGTCGGAAGTGAGAAGAGGACGCTTGTGGTTTGGAGAGCTGTATAAAACTGAAGTGTCATCCCGCACCTGTGACATGACAGCAGCCGTGTAGTGTCCTTCTCACACCTCAGATCCACGGATTATCAGTTCTGATTAATCCAGATCGCTGTGGCTGTGTTTTCTCCCTCCAGAGCGCGTTATTCCTCGGCCGTATAGACTGTCATGAGATCAGTCTGGGCATGGCGTCCTTCCCGAGTTACTGTAAGACGGCGGGAGCAGCGGAGGATGAGAACGGAGAACCGGACCGGTCCTTGCAGCACATGCTGAAGGCCATCGCAGACGAGCGAAACCGGCTGAATGTTCGGCAGGAGATCAGCGGGATCGGGTGTTTTAAAGATGACCGAATTGTGTTCTGGACGTGGATGTTCTCCACATACTTCATGGAGAAGTGGTCACCACGTCAGGACGACATGCTGTTCTATGTTCGACGCAAGCTCTCTTACGTCAGCGCTGATAACACAGAAGGGAAGAAGGTGGAGGTCGAGGTGTACAGAAGGGACTCGAAAAAGCTGCCTGGACTGGGGGACCCTGACATAGACTGGGAGGAGAGTGTATACCTGAACCTCATCTTACAAAAGCTGGACTACGTGGTCACATGTGCTGTGTGTACACGCACAGATGCAGGAGACATCCACATCCACAAAAAGAAGTCGCAGCAAGTGTTCGCTTCTCCCAGCAAGCACCCGATGGACAGCAAGGGTGAGGAGTCCAAGATGAGCTACCCGAACATCTTCTTCATGATCGACAACTTTGAGGAGGTGTTCAGTGATATGACTGTTGGAGAAggagagatggtgtgtgtggagctggTGGCCAGCGACAAGAGCACCACTTTCCAGGGAGTTATCTTCCAGGGCTCCATCCGCTACGAGGCTCTCAAAAAGGTTTACGACAACCGGGTGAGTGTGGCTGCTAAAATGGCCCAGCGCATGTCCTTCGGCTTCTACAAATACAACAACATGGAGTTTGTGCGGATGAAGGGCCCTCAGGGGAAAGGGCATGCCGAGATGGCTGTGAGTCGAGTGCCGACTGGAGACACGTCACCCTGCGGCACCGAGGAGGACCAGGACTCGCCGCTGCACGAGAGGGTGACGTCGTTCAGCACTCCCCCGACCCCCGAGAGAAACAGACCCTccttcttctctccctctctgcgCCGCAAAGTGCCCCGAAACCGCATAGCCGAGATGAAGAAATCCCACTCCGCCAACGACAGCGAGGAGTTCTTCAGGGACGAGGATGAAGAAGacctgTGTAACACCACAAACCTTCGCTCACGCTCTCTTTCGGGAACTGGACGCTCACTCGTGGGCTCCTGGCTGAAGCTGAACAGGACGGAGGACTACTTTCTGCTCTACTCACATCTCACCTACATCACTCTTCCTCTACACCGGATAACTACAGATATTCTGGAGGTGAGACAAAAGCCTATTCTGATGATCTAGCGGCTCCTGACTTCCTTAGAACTTGTGACTAAGTGCCTCTCCACATCAGGCCCCTCAGACGACAGCGCCATCTAGCATCCATACAGAGAACCAAAAAACCCCACCACTGACtaaaggagaggagaagaaaagaactAAGGACTTATTAAAAAACCAGCCAATCAAGAAGTGCCTCTTCCACCTGTTTTCTGTGACAGTCTGTATGTGGACACGAGCGCAACAGCCCAAGTGACTGAGCACCATCTGAAATGCCTCGTTCCATCTGATCGGCTCAGGCTCGGAAGGCAGGACTGGTTAACGTCTGACCTGCGAGCGAAAGGGAAAcgtatcaaagaaaaaaaacatgcaaaagaaTGTCTCTGTTCCTTGTAAATACACTGCTGCTTAGAATACTCAGTGAATCTACCAACCACGACCCTCTCAGCCTTGTGTAAACAGACTCTGCTGGGTCCTTCAATGTTGTTGATTTGTGCGTAGTGCTTTTTTCCAAAGGCAGCCCCAAACCTCCACCACCCCCCAAAACCCCCAAACCCCCAAACCCCCAAACCCCTCACCTCGCCTCATCCCTAGGCCTTAACACCTCCTAACCAGCTAATGTGACACCTAGACTCTGTTTTATGGCCTACTCTCCAGCGCAGAGTCTGGAATTGGAAATGCTGGATGTGTCTTAAGTTCAACCTTCTggttcacacaaaaaaaaaagccgcacaatagatttcttttcttttttttaaaaaaaaaatgacatgatacatttgttcatttgtatgTTAGGAGGTCTTTGTAATCATTGTGATATTTATTACTGGGTGTGAGGCGTTCAAGTGCAACAGAATGATGCTGAAGCTGAAAGGCCTTGAAGAGCAGGTTTCCCTGAGGACAACACAATCGATTTCTTGTGTTATTCAGCAAACGCAGTTGAGCTGTTTGTACATGTAAAGCTACTACATTTCAGAAACACACCTGTACCTGTCCTACAGAAGCCCTGAAACGCAagttgtgggggaaaaaagttaaagCACTGTGTCGTTACTTTGATTTAATAACTTGTTCTAAAACTTGTCATATGTTACgtcattattttgactcaaTATCTTATTTCAACATAgtatgttgttattttaaaatatctcattatttagACTTAACTTATTTTGAgctatcttgttattttgaccaTGCCTGAAggtatttaaatgaattaatgaattatactgtatgtgtctgtATGGCCTATGTTTTGCAGCATACAGAAAAAGAATTACAagctaatatttattaaattaggcTTATTGATATATTGTATGGTGTTAAATATtccatatattaaaatatagtgtttaaaaaaagtcaaaacaagatatattgaaataatgataataacttgacataatattattaagtcaaaataatgacataacaTCCTGATATAACAAGttgaataatgaaataatatccTGCAATAACACgttattaagttgaaataatgacatatcTCTTCaacttttcttcagttttttcaGCTTGCAGTTCAGGACATTGATGCGATTTGTTCTGTCTGGTCTGTTCAGTTCTAACCCGTGAATGTTTGAAGGCTTTAGGGATTCTTTAAACGTGAGCTGAAACTCTGCCCCTTTGTGTTCCTCCAGTTCTGTCTTTCCTTGTAAAGTGTTTGAGTATTTAAAGGTCTGGTGGCTGTTGTCTTTCTGTTAATTGATTGGCTTTGAAAATCACTGACAATGAAGTGTTTATGGAGGAAGTGAAGAACAAACCTGGATTGTCAGTATTATGTTGGATTTTGTGAGCTGAATGTATTCCTAGTGACTGCTTTAAATATGGGTTTAGTAACCATTTGATATTTGAAAGGCAACctgatttgtcttttttttttttttttttttttttttttaaatacttcaaAATTCACttcctttgtatttattttcttctggtAGGCTGTAGAAGCCCATGTCAACCAAATAGAAAGCTCTTTTCAAGAAGGTCTTGTGGTACATACACAGTTCTTTATTCACTTTAACCATGTTTTTgtattcagtttttaaaaaactacATGTGCATGTTTCTCCTATATTTATGTTACACCGTTAATAACTGTACATTTTCTGTACCTCTTATtgaaatacaaattacaaaaaaaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU336452 lncRNA downstream 19488 17041627 ~ 17043280 (-) True G284003
TU336181 lncRNA downstream 213006 16838535 ~ 16849762 (-) False LOC113532230
XR_004579992.1 lncRNA downstream 443050 16618712 ~ 16619718 (-) True LOC117599589
TU335948 lncRNA downstream 613002 16448439 ~ 16449766 (-) True G283546
TU335946 lncRNA downstream 613002 16449017 ~ 16449766 (-) False G283546
TU336615 lncRNA upstream 407547 17506876 ~ 17507145 (-) True G284131
TU336618 lncRNA upstream 414281 17513610 ~ 17515240 (-) True G284134
TU336619 lncRNA upstream 422097 17521426 ~ 17523643 (-) True G284135
TU336633 lncRNA upstream 449003 17548332 ~ 17553258 (-) True G284146
TU336631 lncRNA upstream 459078 17558407 ~ 17564955 (-) True G284145
XM_026922958.2 mRNA downstream 34903 16958512 ~ 17027865 (-) False phf21b
XM_026922955.2 mRNA downstream 34903 16958512 ~ 17027865 (-) False phf21b
XM_026922957.2 mRNA downstream 35892 16958512 ~ 17026876 (-) False phf21b
XM_026923499.2 mRNA downstream 209373 16839401 ~ 16853395 (-) True LOC113532230
XM_034313042.1 mRNA downstream 245348 16815760 ~ 16817420 (-) True kcna1b
XM_026923621.2 mRNA upstream 20017 17119346 ~ 17193239 (-) True LOC113532299
XM_026922628.2 mRNA upstream 162361 17261690 ~ 17316582 (-) True LOC113531742
XM_026923436.2 mRNA upstream 335113 17434442 ~ 17439078 (-) True sapcd1
XM_026923395.2 mRNA upstream 363626 17462955 ~ 17480834 (-) True slc37a3
XM_034313145.1 mRNA upstream 385229 17484558 ~ 17485421 (-) True LOC117599538
TU336422 other downstream 97881 16958524 ~ 16964887 (-) True phf21b
TU335292 other downstream 1885155 15174348 ~ 15177613 (-) False LOC113531972
XR_003403346.2 other downstream 4481705 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 5402441 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 5474744 11586304 ~ 11588024 (-) True G281074
trnar-ccg_5 other upstream 4236 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 879456 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 879456 17978785 ~ 17980246 (-) False LOC113532261
XR_004580005.1 other upstream 971418 18070747 ~ 18082361 (-) False tmem209
trnaa-ugc_10 other upstream 983909 18083238 ~ 18083309 (-) True trnaa-ugc_10

Expression Profile