RNA id: XM_026923230.2


Basic Information

Item Value
RNA id XM_026923230.2
length 4978
RNA type mRNA
GC content 0.43
exon number 14
gene id ptprr
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 10830886 ~ 10885436 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcctcacacgGTGGGTGGAAGTGGATGGGCGACTGCTGCAGTTTAAATaggtttattattgttattgttattatgattAAACATTGCACGCACTGATACATCCTGCATCCCCAGCGGCAGATTAAAAAGGCGTGTCTCAGTCTGTTGACACTGTAGACTGTCAGATGCTAGCAGAGATTGGAGTGCACTCCTCGGAGCCATGCCTGGACGAAGCGCTATTGCTCTCCTCACTGCTTTGTTGCTTGCAGCAGAAATCGCAGgagGCTTCTCAGGGGATGATGAAAGCTACCAGTCGCAGCGGTATGGTCGTTTGGCGCCAGCCACTTCGCTGTATCAACACGTGGACTCCCAGAATCGGGAGCAACCACTGAAATATAACAGCCATGCACGGTCCCTGGCTCTCATAGCCAAGCGAAAGCCCTCCATGTTACTAAAGTCACGTTTCCGGCAGGCGCCGCAGGATCACTCGGAACTTAGCCTCCTTGCCAAGACGGACGATGAGGTGCACATGGAAAACACACCCATATCAGCCCGTCATATTGTCACCATGgctTTGCAGGTGGATGTTCGGCAGTTGAACGTAAGCCTCCTGCGGACGTTCCGTGAAGGCGTGGCCGCTGCCCTGGACATTTCACCACGACAAGTACATATCAACCGTCTGAATGAGCAGAAAAATGGCATTGAGTTGTACGTGTCATCGGACAGAACGGGAGCGTCGGAGCCGGTGTCCTCAGAGGAAGTGATCCGCTCCCTCAACATTAACACTCTGCACAGTAGCCTTGGTCCTTTCGGCATCACCGAGGTCTCCGCTGAGAAGAATGTACTGCAAGGCCAGCATGAGAGGGACAACGTGTGGAGCAACGAAGGCTTCTATGTGGTGGTCATCTTCCTcacaatcttcatcatcattgtcaCCTGTTTAATGGTGCTTTACCGACTGAAGGAGAAGGTTGAGTACTCAGACGGGCAGCTGAAGGGGCTGGGTGCGCCCGTGTCTGTGCATGCCACCCAGCCGCCCCTGACCCTCACCAGCAGCATGGTGCAGGCCAGCCCAGCCCCCAAACCAGCCTGCACCACTGCCACCAGCACAACACCatccaacaccaccaacaccaccaacaccaccaccaccacccagaTCAACTAcagcacaccccacacacacaccagtgccTCCACCTCTGAGTCTCAGTGCCCCCCGTGCCCTCCATGCCCCCCTGTGTCTGAGTTCAAACCCTGTCTGTCCTCCAGCCCTTCGCCCTTCAAGATGAAGCCTGCTGCCGGTCTGCAAGAGAGGCGAGGCTCCAACGTTTCCCTGGTGCTGGATATGAGTGCACTCGGCTCTGTGGAGCCTCTGAATTGTGGAGTGAACACTCCTCGTGAGCGGGTGGCTCAGGAGTACCTGCAGTCAGCCGGTCGAGTTCTCACACGCCAGCAGCTCAGAGACGCCACGCTCAACACACAGGCCCTGCACACTGAGTTTGCTGAAATTCCAATGAACTTCGTTGATCCAAAGGACCTGGATATTCCCGGTCTCGGGACCAAAAACAGATACAAGACCATTTTGCCAAATCCACACTCCAGAGTTCTCCTGAAAAACAAGAATAGCTGTGATGCTCTCAGCAGTTACATAAATGCCAACTACATACGAGGTTACCGCAGACATGAGAAAGCTTACATTGCCACACAAGGTCCTATGATCAACACAGTCAATGACTTCTGGCAGATGGCCTGGCAGGAGGACTCGCCCGTCATCGTCATGATCACCAAGCTGAAAGAGAAGAACGAGaaatgtgttttgtaCTGGCCTGAAAAACGAGGGATTTACGGCAAGGTGGAGGTCCTCATCAACAGTGTCAGGGAATGTGAGCATTACACTGTCCGCACGCTCACACTCAAAcaaGGTGGCCAAAGTCGTAAAGTCCAGCATTACTGGTACACATCATGGCCGGATCATAAAACCCCAGACAGCACAGGGCCTCTGCTGCAGCTCATGACTGATGTAGAGGAAAGCAGAGAGGCTTCCGAGTTTCACGGTCCTGTCATTGTTCACTGCAGTGCTGGAATTGGTCGCACAGGCTGTTTCATAGCCACAACTATAGGCTGTCATCAGCTGCGTCTGGAAGGAGTGGTGGATGTTCTGAGCATCGTGTGCCAGCTGAGAGTAGACAGGGGTGGAATGATCCAAACCGGAGAACAGTATGAATTTGTCCACCACGCCCTGAGTCTCTATGAAGGCCGCCTGTCAGCAGACCTTGGCCAGTGAACACAAACAAAGGCAAGACGAAGATGGTACGAGGTTTTTTTCACTCCACGTTTACCAGGAAGAACAATCTCTCAAGGGTCCAAGAGtcaatttttctttctcatacCAGGAGACAATCTAGAATATAAGGGATTGTTTTGAAGATGTCTTGCACTTATGCTCTTAAACAGCAGTGGTAGTGATCATACTTCCTAAAAGGGATCTCAGCAGATGTGATGCACTCTTGACTGTGAATCCTTTGCCTCTAAAGAAGTGTGTTCACTCTGGCCACATCGATTGAAGCCACTCTACCAGTATACCTGCCCTCTGACCTCCAGCTTTGGACTTTACACTGATCCACATCATGGCTGATGGTCTTAATATTCAATTCAAAATGTGTATAGTTATGATTAGCACTTTTCTCAAGACTTCACACATAACTATGTTACTGTGCACAAGGTATTTGAAGACTGTTAGATGCATCAGCTGGACTCATGTGTGAATATGTCTTATAAGTTCCTATaatcatttacaaaaataactacacacaaaaaaatatacacaaacatcTACTCAAGATTTCAGCATGAATGtaaatggcagattttttttttttttttgtccaaaccAGAAATGCAAAAAGTCAACAACAAGATGAcacaacatttaatatttgacCATCTGCCTGAAAACTGCTCACTTCTTCTGTGTTATTTTCATACCCATTTGTAAAAGAGGATGTTAtacattacaatacaatacaattcaaTAATGCCAGGGGTGCAGTACGCGTATACATAATCGTTCTTTAAATTTAAGAGtttgaaatatatatgtaaaatataatgataGTTATTTTTGTACAATCTTCCCTGAATAACTAttggtttaatatttttatttttttaagttctttttttctatttaataaggcaacatccatccatttatctatATTAAGGAATTGAGGAAGAAAGGAAGTAAAAATGTCCATGTCAAAAAAATGTCAGATCTCCTCCTAGTGTGTTGCAGATACAGAGCTCCAACATGATGTTTGTGAACATTTAGATGAAGAATTCGTGAAGAAActtatttagtttttgtttttttatggatTATGGAATCATTTGgttcaaaatgatgaaattgcATCATTTTAGAGCTTGAATTCACTTGTCAGTTGAATCAATATTTTAGGAAACCctcccctgtttttttttttttttttttggttgtttgatttttttttttaaaccatggaCTGTAAACCATCTCGACAACTCCACCCTTTGCTCTTTCTGAACCCATTTTATCCATGCCTTTTAGCTAAATGCCAACACCCGCTTACATAAACTTCCTGTGCTGAATCAGGAAGTTGTGTGCTGCTCTCTGAATCCAgcgccatttttttttcctgggtgtatttttaaaattcaaaaaagGTGAACACCCCTTTTACATGAATGCTGTCAGACCTTATATTGTTTTCTTGACCTGTGAACCTGTGACTAAGATATGCAGTAcaatgcaaaagtcttaggcaccctacatttttatatacattttgtcTTACACATATACAATCATATACATTTTTTGTgttgaaaaatttttttttcactttttactcAGTCACTTGTCTAGTTTGCagcttttcacatttttacctGCATGAATAACATATTTTACTTCTACACTGTAAGTGAAAGAAGGCAACATTTAGTATTACAAATCAGGTGATCTGATATAGAATGTCCCATAGCTTTCAGTTACATCTTTAATGAGTTCCTTTGCTCTAACCAAATCTTTCCTtcaaatgatacattttaagctgtttcctttctttacatttcgaataaatcacattttatccAAGAGTTTACTCTGAATTGATCACTGAGGAACAGGTATATCATGGCGAAATGTATAGAAGTGCTATTAAAGTTAAAGCAGCATGTCTCTGACCTACACGAGGACTTCACGCTGCTAAAGTGTTCAGTTTTGAGAGGCAGAAAGATGATTGTTGTATAACTATGAACATTTCTTACGTTTTTTGTAttgtccattttttaaaattctgattatttgtgatacagaggttttaaaaaatatatttgtgaatTTCTATTAGATGTGTGTAGCATAGAAAAATCCAGTCAGtcaaaaaggtttttttgtCAGTGTACATTGGCTTACTGTTTGTAGCTATTTTCCACTATTTCGTATTAACCTGTCAAtaacattttttcctctttattgcTAATCCACATGAAtgttgtgggaaaaaaataactgtCCAGCAGATCTGCTACAGTAGATATTTCTAGCTAGTATAATCTGTACATATCATCCTTCTATTATTACAGTAAGAAACATAATAAGACAAGCCTGAGCTGCAGATTTGACACGTCATGTTCAGCTGCCATGACTGTCCACTTGTTTCACCCTGTGAAGACAAACAAGACGTTATTCTAAACTAAAACATACTGTTAATGAAAACACAAGACTATGTCGTGTTTCAAGCCATAATATCTAATGTTGAGGTACTACGTACTGTACGTTCACACTATGAGTCCTCTTTTATCTCTATAGAGAGCCtgtaatgtttagaaatgtgtTCTTGTGTATAGAACTGGCAATTATTGCCAACTCAGACTGTCCTCTAACTGGTAATAATATACCTAACTCTGTGACTCTGTGGTCTTTACAGCCAATAAACCGATCATACCAAGT

Function

GO: NA

KEGG:

id description
K04458 PTPRR; receptor-type tyrosine-protein phosphatase R

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332558 lncRNA downstream 46593 10783361 ~ 10784293 (-) True G280615
TU332463 lncRNA downstream 52989 10776763 ~ 10777897 (-) True G280527
TU332265 lncRNA downstream 360511 10468686 ~ 10470375 (-) True G280360
TU332320 lncRNA downstream 365256 10463954 ~ 10465630 (-) True G280398
TU332306 lncRNA downstream 395040 10430631 ~ 10435846 (-) True G280389
TU332595 lncRNA upstream 20737 10906173 ~ 10908630 (-) True G280640
TU332613 lncRNA upstream 45302 10930738 ~ 10930980 (-) True G280652
TU332738 lncRNA upstream 193732 11079168 ~ 11079487 (-) False sobpb
TU332792 lncRNA upstream 284450 11169886 ~ 11172446 (-) True G280812
TU332799 lncRNA upstream 294495 11179931 ~ 11182051 (-) True G280817
XM_026922785.2 mRNA downstream 2501 10784328 ~ 10828385 (-) True ptprb
XM_026923330.2 mRNA downstream 201123 10618918 ~ 10629763 (-) False LOC113532144
XM_026923329.2 mRNA downstream 201123 10618918 ~ 10629763 (-) True LOC113532144
XM_026922702.2 mRNA downstream 282545 10532781 ~ 10548341 (-) True slc13a4
XM_026923201.2 mRNA downstream 318739 10470536 ~ 10512147 (-) True ptprz1b
XM_026923328.2 mRNA upstream 28198 10913634 ~ 10928416 (-) True rab21
XM_026922686.2 mRNA upstream 45911 10931347 ~ 10940102 (-) True tmem19
XM_034313018.1 mRNA upstream 45911 10931347 ~ 10939347 (-) False tmem19
XM_034313394.1 mRNA upstream 55682 10941118 ~ 10974696 (-) False LOC113532419
XM_026923839.2 mRNA upstream 55682 10941118 ~ 10974696 (-) True LOC113532419
TU332243 other downstream 534765 10269757 ~ 10296121 (-) False LOC113532274
trnay-gua_2 other downstream 1208267 9622533 ~ 9622619 (-) True trnay-gua_2
TU331209 other downstream 1622323 9207351 ~ 9208563 (-) True G279415
XR_003403340.2 other downstream 2021548 8809220 ~ 8809338 (-) True LOC113532431
TU330637 other downstream 2611206 8218561 ~ 8219680 (-) True G278912
XR_004579975.1 other upstream 109669 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332827 other upstream 353499 11238935 ~ 11259392 (-) True vegfab
TU333108 other upstream 700868 11586304 ~ 11588024 (-) True G281074
TU333129 other upstream 772454 11657890 ~ 11660327 (-) True G281092
XR_003403346.2 other upstream 1695487 12580923 ~ 12581063 (-) True LOC113532438

Expression Profile