RNA id: XM_026923247.2


Basic Information

Item Value
RNA id XM_026923247.2
length 3131
RNA type mRNA
GC content 0.44
exon number 7
gene id pparaa
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 19335661 ~ 19355138 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTGCTCCACAGCGAGAGGCAGGAGAGTAGTGTGTGGGGTTTGGACTTTGGCCCCCGCTGGGGCCAGAGCGTATTTATTGGCTGCTGCTGCCCGAACAAACTCGTGTGGAGTGATCTGTCTAATGAGTGATCCAGTGCTTGCAGTACCGTGGCCCAGCACCATGGTAGACGTGCCCAATCCATTCAGCCCGTTGCCCTCAGCGGGGGAAATAGTGTTGGACAGCCCTCTGTGTGGGGAGCTAATCAAGGAAATAGAGGAGTTTGAGGACATCTCTCGATCCTTCAGCGATGACACCTTCAACTTGCTGTACCTGCCTGACATCCAGGAATCCAACAGCTCTGCTTCTCTTGATGTTTTGAGCCCAGCCTCTAGTCCATCCTCAGCAGCCTCTGGTGCAGTCACAGGGCAGGATGAGATCAACCCCAGCCCCTTAAACCTCGAGTGCCGTATATGTGCCGATCGTGCCTCAGGCTTCCACTATGGAGTGCATGCCTGTGAGGGGTGTAAGGGCTTCTTCAGGAGAACCATACGCCTGAAGCTGGAGTACGACAAGTGCGAGCGCAACTGTAAGATCCAGAAAAAGAACCGGAACAAGTGCCAGTACTGCCGTTTCCACAAGTGCCTCGCCGTGGGCATGTCCCACAACGCAATTCGTTTCGGGAGGATGCCACAGTCCGAGAAGCTGAAGCTCAAAGCAGAGCTACAGATCcctgagaaagaggagagagagacacagctgGATGACTGGAAGACTCTGGCCAGCCAAATCCATGAGGCCTATCTTAAACAGTTCCACCTGAACAAGGCTAAAGCACGAGGCTTTCTCACTGGCAAGACCAATACACCGCCTTTTGTCATTCATGACCTGGACACACTACAGCAGGCACAGCCTGTCCTGGTCACCCAGATGCTGAGTGAGGGAAGGGAGGACTTTGCACTTATTGTTCAGGGGCAGGAGACTGAGGAATGCCTCTTCCATTGCTGTCAGTACCTCTCAGTTGAAACGGTCACACAGCTTACCGAGTTTGCCAAGGCTGTGCCCGGCTTCTCCAGCATCGACCTCAATGACCAGGTGACACTGTTGAAGTACGGTGTGCATGAAGCTTTCTTTGCCCTCCTGGCCTCATGCATGAACAAAGATGGGATGCTGGCGACACGGGGCAGCGTCTTTATTACCCGTGAGTTCCTTAAGAGCCTCCGCAAGCCTTTCAGTGATATGATAGAGTCCAAGTTCCAGTTCGCCATGCGATTCAATGCTCTGGAGCTGGACGACAGTGACCTGGCACTGTTTGTGGCTGCCATTATCTGCTGTGGAGACCGACCAGGACTGGGAAACGTGTCACATGTCGAACGCATTCAAGAAAGTATCATTCATGCTCTGCGGCTCCACCTGCAGACCAGCCACCCTGACGACACCTTGCTCTTCCCCAAACTCCTGCAGAAACTAGCTGATCTTCGGCAGCTGGTAACAGAGCATGCTCAGTTGGTCCAGGACATTAAGGAAAAACAGGACACTTCTCTCCATCCACTACTGCAGGAAATTTATAAGGATATGTACTGAACATTGAACTACAGGGTGGAGTTGGTGGTGTAGCTGGATGTGAGGTAGCCTGTGTTTAAATAATGCCCTCCAGCTTCAGGACTGCAACAAGAGGATTAACAGATTAACCTGCTAGTGGTTTAACAGATTAATCTGCTCTGATTCAGCCCCAGTGGCCAAACTTGCAAGCCCGTAGTTGTATGCAGTGACTTTTACTCCACAAGTTGTGGATTCACTACAGGGAATGATaaagctgagtgcaaaagtttgcatacccttacaAATTTTACTAGTAGCCAGACATTTAATTTGTTGAGTTTCATAGGTGTTTGTCTTTAAGTAAAATATCCAAATTATGTATGTTAATACGCAATACACACAAATTATCTAtgttatgttaatatattaacagtaaaaaaaaacagtaaaaaaaaaaataacaaaatgaaaaactgtaTCTCGCGTCCTTAACTTGTAAGCCCACCTTTTGCCTTTATAATTGCCTTCGACATCCTTCGTAGCCTCTGACCAGCTTTTGGATCTTCTCAGTTTTAACATTGGCTCGATATCTAGCCCAGACTTTGCCCATTATTTGTTGACATACCTGTTGACATAACTCTTTTAGATGTCACACACATCTTTCTTCAGATCACGTTTGGAGATCATCATGCCAAAAATGTTTCTGTCAATTCTGCCTAATGTTTCTGATACTTTGGATACACCACATTTCATAATTAcgttcttctattttttttttgtagataaattgtcAAACAGATACATTTAACTttcttccattaaaaaaaaacaacatagggtatgcaaacttttgcaccgttgcactcaactgtatatatgggTCTTTCAAATCCGAGCAAACTGTGAGAACTTGTTTGAGTGAACAGTTATTTAATGCCTTCGGAAAGCAGTGTGTGCCACATGGAAAATGTATTCATACGTCTGTTCTGAATGTGAAGTGTGATTTTCATGCCATGCTCGAATACAGCCTACCCACACAGCCATCATGTAGGACCAATACCTCATTTGAAAAGGCATAAAGAAACATGTATagtagttttatattaaaatgtacacaGTGTATAGCACTCCAGCTGTTATTATCAAaggatgttatttatttttgaaaataagaaaaaagagtATTACTTTATGACTGAATTGACTCAGAGGTAAAATTGGGACTGCCAGCCTTTTGTGTGGTAATAGCACAATATACTAAAAGCTATATTATTTCCAGTTCTGCTCAGTAATTACACAGGAGTaaagtatgtgagtgtttattattatgtgaatCAGGAAATATTATGTTGTATAGATACTCAGGGACAATCAGAGTCGCATTTACACTAGAATAAATCACTCATATCACTATGACAGCAGGTACACTACATTATAAGCACTTATTTTAAGGAAATTGCTTATAAAACTGTTGTTTATGGGGGAAATAATCATTGTTTGTCTTTGTATGTGAAGGAAACTTGGTTAAACTGATTAATGTCGTCTAACAGAGTAGCTCTATATTAAAACCTACTATAATTTAACAGTCTAGAATCTgcaaaccaaaaataa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU337873 lncRNA downstream 44855 19288591 ~ 19290806 (-) True G285245
TU337468 lncRNA downstream 397566 18868057 ~ 18938095 (-) False G284885
TU337891 lncRNA upstream 4112 19356560 ~ 19357907 (-) False LOC113532309
XR_003403326.2 lncRNA upstream 4526 19356974 ~ 19385863 (-) True LOC113532309
XR_003403325.2 lncRNA upstream 16879 19369327 ~ 19385863 (-) False LOC113532309
TU337928 lncRNA upstream 52631 19405079 ~ 19405317 (-) True G285287
TU337929 lncRNA upstream 53455 19405903 ~ 19406128 (-) True G285288
XM_026923849.2 mRNA downstream 421 19314613 ~ 19335240 (-) False mcm10
XM_026923848.2 mRNA downstream 423 19314613 ~ 19335238 (-) True mcm10
XM_026922764.2 mRNA downstream 51162 19283150 ~ 19284499 (-) True LOC113531838
XM_034313291.1 mRNA downstream 62967 19271595 ~ 19272694 (-) True LOC117599574
XM_034313076.1 mRNA downstream 73617 19260713 ~ 19262044 (-) True LOC117599464
XM_026923040.2 mRNA upstream 59382 19411830 ~ 19428263 (-) True atxn10
XM_026923748.2 mRNA upstream 80438 19432886 ~ 19444451 (-) True def6c
XM_026923712.2 mRNA upstream 163906 19516354 ~ 19519608 (-) False cbll1
XM_026923714.2 mRNA upstream 163906 19516354 ~ 19519506 (-) False cbll1
XM_034313359.1 mRNA upstream 163906 19516354 ~ 19519506 (-) False cbll1
trnae-cuc_38 other downstream 1123268 18212322 ~ 18212393 (-) True trnae-cuc_38
XR_003403330.2 other downstream 1147663 18156824 ~ 18187998 (-) True cald1a
trnaa-ugc_14 other downstream 1243117 18092473 ~ 18092544 (-) False trnaa-ugc_14
trnaa-ugc_13 other downstream 1245039 18090551 ~ 18090622 (-) True trnaa-ugc_13
trnaa-ugc_11 other downstream 1251807 18083783 ~ 18083854 (-) True trnaa-ugc_11
TU338301 other upstream 960619 20313067 ~ 20320050 (-) True G285607
trnaa-ugc_16 other upstream 1069953 20422401 ~ 20422472 (-) True trnaa-ugc_16
XR_004579970.1 other upstream 2108378 21460826 ~ 21471100 (-) False LOC113544587
XR_004579971.1 other upstream 2108378 21460826 ~ 21471056 (-) True LOC113544587
XR_003404518.2 other upstream 2108379 21460827 ~ 21471100 (-) False LOC113544587

Expression Profile