RNA id: XR_004579975.1


Basic Information

Item Value
RNA id XR_004579975.1
length 2595
RNA type misc_RNA
GC content 0.42
exon number 7
gene id si:ch211-51e12.7
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 10995105 ~ 11007143 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGAACGCACCACTATGTAAAAGCCTTTGGATGTCAGCGCCATTGCTAAGCGGTTTTTAACCATTCATGGtagaattatttttgttttaggcAAAGTATAGGCAAAACTATTCCTCCTGACTCATTTGGacgaggtttttttttatcccttacGAGATGGAGGATAATACTCCAGAGCAGGTGGAAGAGTTCCGCAATGAAGACCTCAGAGATGACAAAAGTAAAGACGGGTCCTGACTATAAATCGAGAGGCAGTGGAGTCAGGGGGCGAGGCAGAGGCAGCCAGATGGGACGAGGAGGCCGTGGTGGACGCGGAATGATGATGAAAGGTTTTGGCCCACAAGGTCGAGGAAGGGCCAGGAATCATGATAGGTTCATGAATGGATTCAGACCAATTAGGAGGGGAATGGGTAGATCACTACCATATCTGGATATGCAAGGCAGAAAACGAGGCAGAGGTGATGCTATGGACATGTGTGTAGgaccaccacctcctcctcctcctcctccacccatGCATCTAAGGGGACCTCACCCACCTATGCACAGGCACGGTCCACCTCCACCACTTCCACCACCTCCACCTGGGCATCCTCCTTTCAGAGGGTTTCCTCTGCGCCCAAGGGGAAGGGGCATGATGCCCTCCGGCTCCCATCGCCACTTCCACCCCAGAGGGGGGACTTAGTCACCCTTTTGGAAGGCACTGGGACATGGCGGCAGGACACTACAcccgctctctctccctctgcccAGTGATGTGCAGTGAGACGCTTCCTGTCCCCTTCCCCAATTACCAAGCCAAGGCATCAACTGTACAGTACGGACCTTTTTCAGGAGTCTTCCGTGATGGTGAGTGACTCACATACGGCTTTCATGGTTGTGCTGTTAAAGACACCTGTATATCGTAGATACTCGCTATTAATTTGTGCTGATCTCACCAGTGGCAGCTCTTCCATATAGGCAGgtactatacagtatatcagctgttcaacaaatgttaatcttcataaagtacttatgCACAACTCCACACGTTTTAAATTTTGTGGGAATGCTAACTACCTGTTTGGAGTGATCaacgatttaaaaaataatgctatttgacagatataagccaatgttccactgatttggtcgcctttctagatgttgcgcATCTAAATCACATTTAGATGagtagagttattattgcacctagggGTCAAAAATGAGAACTGCAACAAGCAAGCATTAATAGAGGACTCACTCTGCCCCCACGCTTTGTTTGAGTGGGGGGAGGGGCAgcggacaggacagttaatgatcTAACCTCGTCTCTAATTGTCTTGCACACTGTGACAATGGCGATGGGAAGCACACCTGCTCTATCGAATacatattaatttctttttaaaaacccaTTTGAATGGTAGTTACCAAAATGAACACTGTGATCTTTTTAATCCATAGTTGTATTCAGTCTTTTCCCAGATGCTCTTTGGAGAGCAATTATCAGCAACCAGAAACATCATTGCACCAAATCCTTATAAAATTATACCATCTGATTTCAATAAAGCCGTGTTCGAAAACTTGGCAAAAAGTGAGTCAAATTAAAATATTGAGGTGGCAGATTTATGTCAGAGATAATGGAATTGTATTATTTGACACTTTTTATGTTTTCGTCTGTGCTGGGGCGCTGGCCTTAAGACCAGACTACATCTATTACAAggttacattaaaatgaacttGCGTAAGTCTAACGTGATATAGCCTCAGAAATTAAGTCGAGAGGCTGTGTTATTATTACTGTcctcattaatattaacatcGTTAACACATCCTGCCCCACCAAGATGAGCAGTCACGAGCCCATGCTGTATTTCACTGATGGTTGGTTGAAGGATTTTCATTCAAGCTTGCATCACTATTTTTCCTCTTATAAACCTTTATAAATGGCTGCACCTGTATTCTATGGCGTGCATggttaattttgttaattttttaaggTAATTCTGTTCTAATGTGATTGATTTTACTTGTGTCATTAAAGGTTTTTTGAaggattttaatcattttaatctgtCTTGTCAGTCTTCTGCACCTACAATGAACTTCACCCAAAAACttgtaataaattgtaataatggCTGATGCTGAGAAAAATAATGGCTGATTTACTTCAAAGCCATTCGTGTGATTTACGTGACTCCTGTTTACCTTGTTCACTGTACTGCAAAAAATTTAATGGCAAAAAATTGGATTATTGAGCCAGACAAAAGTCCAAACTTTCTACATGTCTGTTGCATGACCATCCATGCCTTTTtggtacattttttaaatcaaagcaGAGCAAACCTTCATGTAGCTTTAGTTTCAATTAATTCAGAAGTCTCTCTGAAAAACTTTTTTGAACATCAGTTTACACTGACATTTATACAAATGCTGCCTTGCTTACCTGCTAAGGGTTTCTGCTTGTTGGCTAcaatttcacaatatttttttaattgacccCAAAAATATATACGAATATGTAATCATGTTGGACCTTCTTGAATGATTTAGACTCTTAAAAGTCAGATTCTATAAcatatacactgcaaaaaaatgacatcttag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332613 lncRNA downstream 64125 10930738 ~ 10930980 (-) True G280652
TU332595 lncRNA downstream 86475 10906173 ~ 10908630 (-) True G280640
TU332558 lncRNA downstream 210812 10783361 ~ 10784293 (-) True G280615
TU332463 lncRNA downstream 217208 10776763 ~ 10777897 (-) True G280527
TU332301 lncRNA downstream 481952 10418918 ~ 10513153 (-) True G280384
TU332738 lncRNA upstream 72025 11079168 ~ 11079487 (-) False sobpb
TU332792 lncRNA upstream 162743 11169886 ~ 11172446 (-) True G280812
TU332799 lncRNA upstream 172788 11179931 ~ 11182051 (-) True G280817
TU332800 lncRNA upstream 175923 11183066 ~ 11184143 (-) True G280818
TU332834 lncRNA upstream 252648 11259791 ~ 11259991 (-) True G280841
XM_034313394.1 mRNA downstream 20409 10941118 ~ 10974696 (-) False LOC113532419
XM_026923839.2 mRNA downstream 20409 10941118 ~ 10974696 (-) True LOC113532419
XM_034313395.1 mRNA downstream 20781 10941118 ~ 10974324 (-) False LOC113532419
XM_026922686.2 mRNA downstream 55003 10931347 ~ 10940102 (-) True tmem19
XM_034313018.1 mRNA downstream 55758 10931347 ~ 10939347 (-) False tmem19
XM_026923658.2 mRNA upstream 1199 11008342 ~ 11009632 (-) True msgn1
XM_026922739.2 mRNA upstream 5076 11012219 ~ 11028405 (-) False LOC113531821
XM_034313401.1 mRNA upstream 5076 11012219 ~ 11028404 (-) False LOC113531821
XM_026922737.2 mRNA upstream 5076 11012219 ~ 11027062 (-) True LOC113531821
XM_026923528.2 mRNA upstream 27941 11035084 ~ 11050606 (-) False agbl5
TU332243 other downstream 698984 10269757 ~ 10296121 (-) False LOC113532274
trnay-gua_2 other downstream 1372486 9622533 ~ 9622619 (-) True trnay-gua_2
TU331209 other downstream 1786542 9207351 ~ 9208563 (-) True G279415
XR_003403340.2 other downstream 2185767 8809220 ~ 8809338 (-) True LOC113532431
TU330637 other downstream 2775425 8218561 ~ 8219680 (-) True G278912
TU332827 other upstream 231792 11238935 ~ 11259392 (-) True vegfab
TU333108 other upstream 579161 11586304 ~ 11588024 (-) True G281074
TU333129 other upstream 650747 11657890 ~ 11660327 (-) True G281092
XR_003403346.2 other upstream 1573780 12580923 ~ 12581063 (-) True LOC113532438
TU335292 other upstream 4167205 15174348 ~ 15177613 (-) False LOC113531972

Expression Profile