RNA id: XM_026923287.2


Basic Information

Item Value
RNA id XM_026923287.2
length 3907
RNA type mRNA
GC content 0.44
exon number 16
gene id tmem214
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 11053196 ~ 11065947 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGTGATGACGTCATGCCCCCAGAGCAGACGTGGCACAGAGACGGTTTAAAGTCGCAGCTGTAGCCAGAGCTGACCTGCCACCATTATTCTGTACACCAACTCTAGGGGAATTAAAGGCGTTTAAACAAAAAGCACTCGAAGGCtttcctgctttttttaaacGCTCAGTAAACCATGGCTTCGTCTGCGAATAATAACGGTTCTGCTGGTAAATGGGAGGTGGTGAGACGAGGCAAGAAACAGAACAGCGCTGCCAAGAGTCAAGCCGACAAGAAGTCCAGGAAAGCTCTGAGCGAGTCTAACTCTCCAAAACTTGACCTGTATCCATCTGTAAAGATGTCCGAGACAATATTTGAGGGTTTCGAGAAGATCGGAAAGAAGCAGAACAAGGAACAGGTTCCTCCCCCGGCTGAGACTCAACAGAAGAAGCTCAACGCAGCAAAGCAGTCCAAGAAATCCCAGTCCAACAGCAGCTCAAAACCGACCCACTACAAAACATTGGAGGAAGCTGTCAAAGCTCTGGATGTGGTGGAGTTGAGGCAGCAGCTGGAGAAAAGTCAAGTTATGTTCCCTGAGAATCCATGTGTCTGGGTGAAGGATCTAGCTGGGTATCTCAACAGCAAACTGCTCGCGCCTGACACAGATCCCACACTCAGCAGTTATGCTCACGATTACCCATACTGCCTTGCTGGAAAGGATCTACGCAACATAATTAAGAATCTGTTGGGGAAAAGCGGTGACACGCTACAAGAATTCTTTGATCACTGTGTCCTCACCATGCTCCGGGAGTTGGATAGACCAGCAGctgAACCACTGCATGGCTACAGAATGTGCATTCAGGCCATCATGATGAACAAACCCAAAACAGCCACGCTCAACCTGCCTGAACATCTGGAGCTGCTGCGCTCTCACCAGAACCGTCCAGCCAAGTGTCTGAGCATTATGTGGGCTCTTGGACAAGCTGGCTTCTATGACCTTACCCAAGGCATAAGAGTTTGGCTGGGCATCATGCTCCCTGTTCTAGGAGTGAAAACCCTGTCTGCCTATGCCATTGCATACCTAGAGAGATTGCTCACGCTTCATGCCAATCTGTCTAAAGGGTTTGGGGTAATGGGCCCAAAAGAATTCTTCCCTCTGCTGGATTTTGCTTACATGCCCAAGAATGCTCTGTCGGCAAGCCTGCAGGAGCAGTTGAGGAGGCTCTATCCACGGCTGAAGGTTCTAGCATTTGGAGCGAAACCGGAATCCACATTGCATACCTACttcccttcctttctctccagaGCCACGCCCAATTGTCCTGATACCATGAAGAAAGAGTTGCTGAGCAGCCTGACCGAGTGCCTTTGTGTAGATGCACAGAGTTTGGGTGTATGGAGGCAACTTTACACTAAACACCTCACTCAGTCCAGCCTCTTGTTGAATCATCTGCTCAGTTTATGGAGCACGCTCCCACCAAAGttGCGAAACAGCCTTCAGGAAACAATTCAGTCTTTCAGAGTGACCAATGAAGAGATTAGGTCCATAGCTAACTTGGATGACGTACAGGAATGCAGCGTTGTATGCAGtTCTCTGCAGATGAAAATTCGCTCTCAGGGGTTCCCCTGGTCACGGGTGCTGATGGTGCTGCTGGTGTTTGTTGCCGGTTTCATTGCTCATGATGTGAGATCTCATGGCGCGTTTGCCGACTCTACCACAGCGCTGTACCTGCAGAAGAGCGGAGTCACTGCAGTATCCCAGCAGGCCTGGAGAAAAGTGTCCCATTACAGCCAGCAGGGCATCAActggttAGCTGAGACTATGCCATATTATTACTCTCTGGCTGTGGAGGCAGTGGGTCCCTTtttggaagccattttggagAAGCTAAAGGTGGCTGCAGTCTTTATTGCACAGAAGAGTTCTGAACTGATACTGTGGCTGCAGGAGAGCACACCACTCCTCGTAGAATGGATCAATGCCAACACCCCAGAGAGTGTTTTCCAGTTTTTGCAGTTTGTTAaggagctgctgctgtttgtgCATCAGAACTACATCCTCCCCGGCCTGCAGTACGTCGTTACAGCTCTCCAGCATCTTTGGCAGTCACTGCAGGACTCCTGCAATGGTGAAGTATCACTTCTCTGCATGCAGAACCATGTGGTGGCATTCACCAATAGCACATGGATTTACTTGCAAGATACAACAACAGCCATCAGGAGCTGGGCCCAAGAGCTGCTGTCCAAGGCATGATACACGCCCAGAATAGGGGACAAAGACTGTCTTTATTTGCGTCTACCCTCTCGCGCTGGGCTGTAAAGACTGTAGGATGCTTTTCCATCTAAATTTCTCAAATTCGGAGGACTCGACAGGAGGTGGAACACTTaccagttgttgttttttttttttttttttttttttttttttctgtccccCACTACATTATTTGGTACTCCACCCCCATCCCTCAATTTCAGGACTTTTTATATGATCAATACCTACAAATTTTTCTGAGTGTTCCTTTTCATCTCTTGTGTTTTACTTAGGTGACTGCagatacaatatttattttatgtatgtactaataaaacaaaagactACAAAAGAGGCTGCTGGGTTAATTGGATATGAAAAGTGCTGAATGATGCAggacacacattttatattaagCAGCACATCTGAGGTTTTGCTGGAGAAATATCTGAACAGCTACTGTATAATAAAGCAAAACACAGCATAATTTGATATTAAATTCGACCTGGAGCAAATTTACTCACGAAATATGCACTTGAACACAAAAGCCTTAagcattttgtgttttaaaggtTTACACATTGTTGGCAACAATTATCTAAGATTTCACTTTTTTGTGCCAATTTACGTATAAGCAAACTGTTCTAGTGCTTCTATTCCCTATTTGCGCATTCAGTTTAAGATGCCTGTCAAAGATGCAGTTTAATCTTGTTTAATTCTAGCAGCTTATTGCATTTCAAATACAGCAGCACACTGAGGTTCTAGCGATGAGGCATTCCATGGCTATGTGACCAAACTTTCCTCCTGGATGTTAGTGTTGGACCCTGTGTGCTGGTGGTCACCTGCTGGATCTGTAACTTATCTAGCTCACATAAGTGAACTCATTCCATTCACAGCAATAGTCAGAAAGTTTTCCATAAGTAATGTCTGTGAAAAAAATTGTTGAGTATTTTATGTGGAAACATTGCCATTGGAAAACTTTCTGAGCATGCCATGATTTAATATAGAAAGTCATTCAAGCATAATACctgattttctttgtagaaATGCTTAGTGGTTGATTTGATTTGGTGGTcatgaagtttttttgtttgtttgtttgttttttttaaagatttacttACTGTGCGCCTCACTCGCCCACTGTTTCTCAGTATCGGAGAAGTTTTGTGGTGATTACTGTTGTTATCGTCTGCAAGTCTTCTACTTGATTACCTTTTAATGTGATCTGGGAAGCTCTACTGAAGATAGAGAAGCAAGTTGTATATTCTCTACCCCTCACTCTCTGCAGCAAAGATTtgcataatataaataaaatgacaggaCATGGAGCTCCTTCTAGAATTGGAATTCTGCATTTGATGTGAAGTTTGCCTCCTGTGTTTGTTTCTAGAGGCTACATCTGTGCGGTACACCATAATGTTCAAGTGTCAAAAGGTGTAATTAAGATTTTTAGCACTGTATCTGTAATGGTTATCAGCCAGCTGTGTCTGGTTAAAGACAGATTCAGGATTAGACTGTAGCCCCACCTCTTAACATAACAGGGCTGGAAGTACAGATTACACCAtggaagaggaaaagagaaataatataaatgtgatTAACTAATTTTGTTGCTTTGTATAAatggtttataaataaattaataaaatctgtGCAGCCCTGCTCATGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332613 lncRNA downstream 122216 10930738 ~ 10930980 (-) True G280652
TU332595 lncRNA downstream 144566 10906173 ~ 10908630 (-) True G280640
TU332558 lncRNA downstream 268903 10783361 ~ 10784293 (-) True G280615
TU332463 lncRNA downstream 275299 10776763 ~ 10777897 (-) True G280527
TU332265 lncRNA downstream 582821 10468686 ~ 10470375 (-) True G280360
TU332738 lncRNA upstream 13221 11079168 ~ 11079487 (-) False sobpb
TU332792 lncRNA upstream 103939 11169886 ~ 11172446 (-) True G280812
TU332799 lncRNA upstream 113984 11179931 ~ 11182051 (-) True G280817
TU332800 lncRNA upstream 117119 11183066 ~ 11184143 (-) True G280818
TU332834 lncRNA upstream 193844 11259791 ~ 11259991 (-) True G280841
XM_026923528.2 mRNA downstream 2590 11035084 ~ 11050606 (-) False agbl5
XM_034313318.1 mRNA downstream 2590 11035084 ~ 11050606 (-) False agbl5
XM_034313320.1 mRNA downstream 2590 11042187 ~ 11050606 (-) True agbl5
XM_034313319.1 mRNA downstream 2598 11035084 ~ 11050598 (-) False agbl5
XM_026923530.2 mRNA downstream 2598 11035084 ~ 11050598 (-) False agbl5
XM_026923844.2 mRNA upstream 1790 11067737 ~ 11076762 (-) True mapre3b
XM_034312991.1 mRNA upstream 13226 11079173 ~ 11094176 (-) False sobpb
XM_026922693.2 mRNA upstream 13226 11079173 ~ 11093818 (-) True sobpb
XM_026922823.2 mRNA upstream 173289 11239236 ~ 11259412 (-) False vegfab
XM_026922824.2 mRNA upstream 173289 11239236 ~ 11259411 (-) False vegfab
XR_004579975.1 other downstream 46053 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332243 other downstream 757075 10269757 ~ 10296121 (-) False LOC113532274
trnay-gua_2 other downstream 1430577 9622533 ~ 9622619 (-) True trnay-gua_2
TU331209 other downstream 1844633 9207351 ~ 9208563 (-) True G279415
XR_003403340.2 other downstream 2243858 8809220 ~ 8809338 (-) True LOC113532431
TU332827 other upstream 172988 11238935 ~ 11259392 (-) True vegfab
TU333108 other upstream 520357 11586304 ~ 11588024 (-) True G281074
TU333129 other upstream 591943 11657890 ~ 11660327 (-) True G281092
XR_003403346.2 other upstream 1514976 12580923 ~ 12581063 (-) True LOC113532438
TU335292 other upstream 4108401 15174348 ~ 15177613 (-) False LOC113531972

Expression Profile