RNA id: XM_026923288.2


Basic Information

Item Value
RNA id XM_026923288.2
length 2213
RNA type mRNA
GC content 0.46
exon number 8
gene id cmasa
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 12570068 ~ 12579954 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAAGATTATCTTGAAGAACAAAACACTTTGTTCATACACTGAGAATCATACACTTTTGTTGGTCACAGAGCTTATTTTCTGCAATAATCCAAACGCCAATGGGAGAATCCTGTTGGCTTTTTGTCGAGAGAACCAGGGTGATGCTAACTTCCGGGTCGGCCCACAGAACTAAGTGAACCCTGCGGCGCTGTGTTTCGCGGTTGTTGTGTGTGACGTAGCGCTACGTTTCCCGTCTTGACCCTCGCGGAATTTCTATTTCAGAGGTTGCTTTGAAAACAGACGGATtcagtacatttatttattttagtattattttttatgacaTTCTTTATGCCAAAGCTGGTCCTAAAGTCCATTATTTTGAGAAATCGCTTTTTCGGTGGcgcactgcagtgtgtgagtgagagagtgagagagagggaatggcTGCCTCAGGGAAACACACAGTGGATGGACCTACAGAAGAGTGCAGCAATCACTTAAACAAGCGCATCCGGTTAGAGGAGAAGAGACAAATCGCTGCAGTGATCCTCGCCCGGGGAGGCAGTAAAGGAATCCCCCTGAAGAACATCAAGCTGCTGGCTGGAGTTCCGCTCATCGGCTGGGTGTTACGAGCGGCTGTAGAGTCCGAGGTGTTTGACAGTGTGTGGGTGTCTACGGACCATGATGAGATTGAGAGGGTGGCAAAAAACTGGGGGGCTAAGGTCCACAGAAGGAGTCCAGAAGTGTCCAAAGACACATCGACATCATTGGAAACCCTACAAGAGTTTTCCAGACTTAACCCAGAAGTGGATGTCATCTGTAACATCCAGGCCACCTCACCGTGCCTTCACCCGCACCACCTGAAACAGGCTGTGGAGATGATGACCAAGCAAGGCTATGAATCTGTCTTCTCTGTCGTCCGCCGACACCACTTCCGCTGGCAAGAGATAAAAAATGGAGAGGCCACATGCACTAGGCCTCTGAACTTGGACCCATCCAGGAGACCTCGTCGTCAAGACTGGGATGGAGAACTCTGCGAAAATGGATCCTTTTACTTTGCCACCAAAGATCTTGTAACCCAGGGACTCCTGCAGGGAGGGAAGATTGCCTACTTTGAGATGCCCCCAGAGTATAGCGTTGATATTGATGTTGACATCGACTGGCCCGTAGCAGAACAGAGGGTTCTCAGGTTTGGTTACTTTGGCAAGGATAAGCCGGAGTTGATGCGCTTGCTCTTGTGCAACTTGTCAGGCTGCCTGACTGACGGGCAGGTCTATCTGTCTCGTGTGGGAGAGGAGATGGTATCTATCAATACCAGAGACCTGACTGGCATCCGCATTCTACAGCAAGAAGGAATGGAGGCGATCCTTTTATCATCCAGTGACAACCCAGTACCAGAAGTACTTGCAGAGAAGCTGTCACAGAAAACAGGTTGTGAAGTGAGGCATCTGAAAGAGGAAAAGCAAATAGAACTGGAGAGACTGCTGAAAGAGAAGGAGCTCGTGTGGAAAGACGTGGCCTACATGGGTAATGATGTGCCAGATGTGGACTGCCTGAACCTGGCTGGTCTGAGCGCAGTGCCCTTGGACGTCCCCATGGTGGTTCTCAATGCGGCTAAATACTCGTGCCAGAGGCCAGCGGGACACGGAGCTCTTAGGGAGTTCATTGAGCACATTCTCCTGATTAAGAAGGTGGCAAAGTTTCAGAAGGAGAAGGATCACTGCTAAAGAGATACGTTTTTAATTTAAGGAAAGTTGTGAAGCATTGCACTCTCAAGCTATGTGTTAGAGTCAAATTCTTATAGAATGTGTATtatgtttgtaatgaaaaattcTGCAGTGCTCCTTGGTGTACTATGGGGTTAAAGGTCTTGTGCTGAGAAAGTAGAAGAGTGAAGATTCAGTCACAAGATCTTTCCATTATGTCAATCCTTTATACTCCAGCACACACCAGAGGGCAACCTTGCACATAACATCACATTATAGGAAGGCTTTGAAACTGTGATCATTCTTGCTTAGATATGAGCTGCTGACTACTTTGAAATATAGTGCATACTTTATCATATGGTCTAGTTAACTTTATCATCTTTACACCATGACATTCGCATTAGCAGTAAAATTCACATTACTGTACATGCCTATcctaaatgtcattttttttcatgataaCATATATTTCTCTGTACAAGCAGTCATTGATTAATCAAGTATTAAATGGAAGAATtaactgt

Function

GO:

id name namespace
GO:0006054 N-acetylneuraminate metabolic process biological_process
GO:0009103 lipopolysaccharide biosynthetic process biological_process
GO:0005634 nucleus cellular_component
GO:0008781 N-acylneuraminate cytidylyltransferase activity molecular_function

KEGG:

id description
K21749 CMAS; N-acylneuraminate/3-deoxy-D-glycero-D-galacto-nononate cytidylyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333645 lncRNA downstream 92439 12476264 ~ 12477629 (-) True G281527
TU333624 lncRNA downstream 110976 12457563 ~ 12459092 (-) True G281510
TU333597 lncRNA downstream 200803 12368959 ~ 12369265 (-) True G281486
TU333565 lncRNA downstream 315913 12251314 ~ 12254155 (-) True G281455
TU333459 lncRNA downstream 476009 12093857 ~ 12094059 (-) True G281373
XR_003403338.2 lncRNA upstream 566328 13146282 ~ 13147358 (-) True LOC113532391
TU334183 lncRNA upstream 588721 13168675 ~ 13210493 (-) True G281964
TU334201 lncRNA upstream 679198 13259152 ~ 13285718 (-) True G281981
TU334236 lncRNA upstream 740219 13320173 ~ 13373048 (-) False G282006
TU334237 lncRNA upstream 740219 13320173 ~ 13321414 (-) True G282006
XM_026923775.2 mRNA downstream 52385 12496039 ~ 12517683 (-) False shisal1a
XM_026923776.2 mRNA downstream 52392 12488395 ~ 12517676 (-) True shisal1a
XM_026923777.2 mRNA downstream 52392 12496039 ~ 12517676 (-) False shisal1a
XM_026923774.2 mRNA downstream 52392 12496039 ~ 12517676 (-) False shisal1a
XM_026923619.2 mRNA downstream 118483 12445898 ~ 12451585 (-) True si:ch211-214j24.10
XM_026923289.2 mRNA upstream 4883 12584837 ~ 12588680 (-) True kcnj8
XM_026922806.2 mRNA upstream 12133 12592087 ~ 12636416 (-) False abcc9
XM_026922804.2 mRNA upstream 12133 12592087 ~ 12636416 (-) True abcc9
XM_026922809.2 mRNA upstream 12133 12592087 ~ 12633220 (-) False abcc9
XM_026922808.2 mRNA upstream 12133 12592087 ~ 12633220 (-) False abcc9
TU333129 other downstream 909741 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 982044 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 1310676 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 1562925 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332243 other downstream 2273947 10269757 ~ 10296121 (-) False LOC113532274
XR_003403346.2 other upstream 969 12580923 ~ 12581063 (-) True LOC113532438
TU335292 other upstream 2594394 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 4378570 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 4523611 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 5398831 17978785 ~ 17980246 (-) False LOC113532261

Expression Profile