RNA id: XM_026923289.2


Basic Information

Item Value
RNA id XM_026923289.2
length 2939
RNA type mRNA
GC content 0.47
exon number 2
gene id kcnj8
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 12584837 ~ 12588680 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttcttaacaaattcaaaaagactggaagtgttgcagaccaaccgagccgtggacgtccatgaacatGCACTGACGTGCTGCTGGCATACGCAGTCCTGTGTGTCTGGAGAGCTTTGGGACAGCCTGTTACAGGATAAGAGAGAGCTGAAGCTGTTTGCTGTAAGGGTTTCGCGGAGTACACAGGGCAGTGACCGCCCCTGAGATGTGCGTCAGCTGGAGCTGGCCTTGGAGCAGCCTCTCTGGAGTGTGTGGCGAGCAGCAAAACTTTTTGCACGCATCCCTTGGAACGtctcaaaggaaaaaaaagctttcgGTCAGATGCAAAACGTTGCAACACATCTGCCGGGTTAAACAGCTGGGATGTAAGACGATGGCGTGTTGGAGCGCACGCGCTGGTTAGATCTGCGCGCCgtcgctgtgtgtgtggttttagtttctttttttattctgaactGAAGCACGGATATTGCCTGTTCGTGGGCGGTAACGTGCCGAATAGCGATGCTGGCGAGAAAAAGCATAATTCCCGAAGAGTTCGCGCTGCCCGCGCTGGCCTCGCGCGCCCCCCGGAAGCCGGTGTTCAGGGACCGCGTGAACAAGGCGCGCTTCATTGCCAAGAGCGGCGCGTGCAACCTGGCGCACAAGAACATCCGCGAGCAGGGCCGCTTCCTGCAGGACGTCTTCACCACGCTGGTGGACCTTAAGTGGCGCTTCACGCTTGTCATCTTCACCATGACCTTCCTGTGCAGCTGGCTGCTGTTCGCCATGGCCTGGTGGCTCGTTGCGTTCGCGCACGGAGACCTGGATCTCACCCGTCAGTCCGGGGTCGAGCAGTGCGTCACCAACGTCAAGTCCTTCACCTCAGCCTTCCTCTTCTCCATCGAAGTGCAGGTCACTATAGGCTTCGGTGGCCGCATGATCACTGAGCAGTGTCCGACAGCCATCACGGTGCTGATCCTGCAGAACATCGCTGGGCTCATCATCAATGCCGTCATGCTGGGCTGCATCTTCATGAAGACGGCGCAGTCACACAGGCGTGCTGAGACACTCATCTTCAGCCGCCAGGCTTGCATCGCCGTTCGCAACAGCCGTCTGTGCTTCATGATCCGCGTGGGTGACTTGCGCAAGAGCATGATCATCAATGCTGCTGTGCGCCTCCAGGTGGTGCGCAAGACCACCACGCCTGAGGGAGAGGTCATCCCTATACACCAGATCGACATCCAGAGTGAGAGCGCCGTGGCCAGCAACAGTATTTTCCTCCTGGCTCCACTCATCATCTGCCATGTCATTGATAAAGACAGTCCACTGTATGACCTGTCAGCCATGGAGCTGCAGTGCAGTGACCTGGAGGTGATTGTCATCCTTGAGGGTGTTGTGGAGACCACGGGCATCACCACACAGGCACGCACTTCTTATGTGACTGAGGAGATCCAGTGGGGCCACCGCTTTGTGCCTATCGTGACTGAAGAGGAAGGGGTTTACTCTGTGGACTACTCTAAGTTTGGCAACACAGTGAAGGTAGCGACGCCACGCTGCAGCGCCCGTGAGCTCGACGAGAAGCCATCCATCCTCATACAGACGATGCAGAAGAGTGAGCTGTCGCACCAGAACTCTCTGCGTAAGAGGAACTCAATGCGCCGCAACAACTCCATGCGCAAGAGCAACTCCATGCAGCGGAACAACCTGTCACTAGCTGTACCCAAAGTGCAGTTCTTCACACCTGAAGGGGGGCAGAATGTAGCTGTCACATGACACGCACAAGGCCATCGTCTGGATTATAAAAGGTTCAGGGACGCTCTATTCCTGTCTTGCTCCACTGGACCTCTTCCTGTTGTTCTGTCTAACTCTACCACTTCTGTTGTAAAGGAGCAGCAACTGCTAATCTGCTTTCATCCTTTCCTGTTTTACACAAAATCagttcaatttaaaaaatactttttaaataataacatattatttgagagtgagaaagaggaaTTCATTGTCTCTCATACTACATCACTATTTCTTTTCATTAGAGCACTATTTCACTGTTGGAACCTGTAATATTGTCACCAAGCTTGTACACACTTTATCTAAGAAatttaatgttctgtgtaaaatgagaaatattaaaacGCTCAGTAAAGCAGTTTGTCCTGCTTGTTGTGTTTTCAATTCACTATAATGTATTTTCTACTTTTAATTGCTTTGTGTTCTGATTTAGCTTGCATATTAGtgttaatattagtattaaGGCATATTAATATTAGTTAACAATTTAGAAACAATGAAAATTACACAATGTAAGGGTTTTATAACATAATagtaatgtttttcttttcttgaaataaaaaaaatattttaaactttttaaaaacaatagaCTGAAAGATTTTATTCTGCCACTTGGGGGAGCTGTTGTATCAACTTTCATGTCTTGGGGAAACCcgaatatacactatatgggcaaaagtttgtggatacctgaccatcacacccaaatgtgttaccacaaagttggacacacacagttgtataggatgtcttttcAGTGGCATAGACAGAAATTAATGTATGTTTCAGACAGAAGCAGGAACAGTACGATTACTGCTCAAAAATGTTATTCATCATGCACCTCTGAATAAGCAGCCACTTATTTTCCAATGTATTTGTTATGGAGATGTTATGGAGATATGCTGTAAATTGTTACTGTTTCAGCTTTGTTTATGATGATACTTGAAATACAGTATTGTTAGTTATGTAAGAACTCGGTGGTATCTCCATTATGATGTTAAATTTGCTCAAAGTTAGCCATGGTGatacaaaatatgatttttctaattaaaatagGATGTCATGGCCATCTTCCAACCGCAGGCAAAAGTGCCTCTAATCTGATCTTTATCCTCAAGTGTGACAGTTtgaacagcaaaaaaataaatctggtgGAGTTTGA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015272 ATP-activated inward rectifier potassium channel activity molecular_function

KEGG:

id description
K05001 KCNJ8, KIR6.1; potassium inwardly-rectifying channel subfamily J member 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333645 lncRNA downstream 107208 12476264 ~ 12477629 (-) True G281527
TU333624 lncRNA downstream 125745 12457563 ~ 12459092 (-) True G281510
TU333597 lncRNA downstream 215572 12368959 ~ 12369265 (-) True G281486
TU333565 lncRNA downstream 330682 12251314 ~ 12254155 (-) True G281455
TU333459 lncRNA downstream 490778 12093857 ~ 12094059 (-) True G281373
XR_003403338.2 lncRNA upstream 557602 13146282 ~ 13147358 (-) True LOC113532391
TU334183 lncRNA upstream 579995 13168675 ~ 13210493 (-) True G281964
TU334201 lncRNA upstream 670472 13259152 ~ 13285718 (-) True G281981
TU334236 lncRNA upstream 731493 13320173 ~ 13373048 (-) False G282006
TU334237 lncRNA upstream 731493 13320173 ~ 13321414 (-) True G282006
XM_026923288.2 mRNA downstream 4883 12570068 ~ 12579954 (-) True cmasa
XM_026923775.2 mRNA downstream 67154 12496039 ~ 12517683 (-) False shisal1a
XM_026923776.2 mRNA downstream 67161 12488395 ~ 12517676 (-) True shisal1a
XM_026923777.2 mRNA downstream 67161 12496039 ~ 12517676 (-) False shisal1a
XM_026923774.2 mRNA downstream 67161 12496039 ~ 12517676 (-) False shisal1a
XM_026922806.2 mRNA upstream 3407 12592087 ~ 12636416 (-) False abcc9
XM_026922804.2 mRNA upstream 3407 12592087 ~ 12636416 (-) True abcc9
XM_026922809.2 mRNA upstream 3407 12592087 ~ 12633220 (-) False abcc9
XM_026922808.2 mRNA upstream 3407 12592087 ~ 12633220 (-) False abcc9
XM_034313153.1 mRNA upstream 3407 12592087 ~ 12633220 (-) False abcc9
XR_003403346.2 other downstream 3774 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 924510 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 996813 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 1325445 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 1577694 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU335292 other upstream 2585668 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 4369844 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 4514885 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 5390105 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 5390105 17978785 ~ 17980246 (-) False LOC113532261

Expression Profile