RNA id: XM_026923304.2


Basic Information

Item Value
RNA id XM_026923304.2
length 2210
RNA type mRNA
GC content 0.41
exon number 6
gene id asb13a.1
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 9594458 ~ 9600035 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cgagttcttctgcACCAAACGtagcacaccatgtcttcatggacctcactttgtttGTTCAGGTAACAGTACTGAGTGAATatgaactaaaatgtacattagcCTATAATGGATGACTCCTGGAAAAGCATGTTTCAAGCATATGTAAATTAATTGGATTCatgcattaatgcaaaaataagattttttaagtattttgattatatttcaagggaAAGTGTAATTATTGTGGGACAAACGAAAGTGCTGTTTTTGTAGGTTATATTAAGGTTTTAAGTTTGTGAAGGGCACTTTACCTGCGTTTAAGAggtcttttattttacatatatatttgtaaatgtgatATCAGTGGAATCACAATCATGGAATGACCCCTGAAAATTCATATTTTAGGAACTCTCAACCATCCACTAAACCCTTAAGAGATCTTTCTTCCTGTAAGtgtcttcattttaaactgtaAAGCAAATACAGGaaactgtatttaatatttatactttGAGTTGTAGCAGACTTTTATTATGAAGTAAGAAAAAAGGTTAAGTAATATCTCAAATAAAGAAACTACAACTCCCATGATTCCTAGCAAGACTGACCTGAATCGTAATCTCCAGTTTCACATTATTTCTttgtctaaaaataaatgtttggtcataaacacagctgtgtgtgtgtggagtaaaaTGAAGGAAGGGTTTTGAGTGTTGATGCTAGCTGAAGTTGGGACATGATGGGACTAAACCATTCAGCGGGGGTGATGGACTGTACCATTGTAAATGACAGTGTTGCCCCTTATAATACACTGACATAAACATGGATCCACCTGCAGGGAGGACGTGTTTTGGGGAAATCGGCTTCTGGTCTGAGCGGACACCAATGCATGAGGCAGCGTCTTTAGGACAAGTTGAGAAGCTCCGGCTTCTGGTTGAAAGTGGTGCTTCAGTAAATGCAGTGACAGTAGACAACATGACCCCGCTCCATGATGCCTGCATACAGGATCACCCAGAGTGCGTTCGAGTGCTTCTGAACGCTGGCGCACAGGTGGATGTACGGACCATTCATGGTAGCACCCCTCTGTGCCATGCGTGTGCAGCAGGCAGTGTGGAGAGTGCGAGACTGCTTCTGGAGCATGGAGCTTCAGTGAATCCCTCCCTCACGGCCCTCACTGCCTCCCCACTGCATGAGGCCTGCATACAAGGTAATCCAGAATGTGTGAAGTTGGTTATATCAAAAGGAGCCTTGTTGGAGGCTTTTGACATTTACTTTGGGACGCCGCTGCACGCCGCATGCGCTAAAGCACATCTGGAGTGCGCCTTACAGCTGCTCAATGCAGgTGCCTGCGTGAATGCTACAAAGTTCCATGAGACGGCTCTGCACCACGCAGCGAGAGTGGGTCGGACGGACCTGATTGAGCTACTGGTGGACTTTGGTGGAGACATTAATGTCAGGGACAACATGGGACGCAAACCAATAGATTACACAACCCCTGGATCCCTATCTCACATCTGTCTACAGCGCTATGAGAgTTGTCCTCTGTCTCTACAGCAGCTGAGTCGTATCACACTGAGGCGTGTCCTGGGCACCAGAGCGCTGCAGGTCATCACCAAACTAGACATCTCACAACGCATCATCAGTTACCTCAGTTACAAATAACACAGCAAAACAAGTTTATTGTGTTACTGTGAAAATGGTAATCATGAGGATGAACTCGGTTAGGAGGCTCAGGGGAAAAAACGCTCGtctaaacattttaatgctgTCACCAGCTGCTGATTGTTCTAAAATATGCTGCAAGAAATATTTTCCATGATCTTATGGTGCATTAATCAAACTGTTTGATATAATGTGCAAACATTTGATTTAATGTGCAGAGGACACTTAATACAAGTTCAGCTTTATGTTTGTTTCTTGAGAAATAAGCCAGAAATAGGTCCTGTGTCTCCTGTAATGGATAAATAATTAGTATATAAACTCTGTGGTTAATATATACATTGTGATGTTATAAAAACTAAGTGCTGGATTCAGAAAGTTGTAggatttttggatttgtttaccCCAAAAATGTGGAACCTTCACTTACAACCTTTGCTTTGTCTTTACCTCTCTCTACTTTTTAAGACAGTATGTTAGAATAtttagagtgaaaaaaaaaatctgtttccaAATGTCGTATAAATGTGGACTTCAGCTCGCAGCTTATTTATCTTGCC

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU331457 lncRNA downstream 61037 9533222 ~ 9533421 (-) True G279641
TU331441 lncRNA downstream 74380 9519833 ~ 9520078 (-) True G279625
TU331440 lncRNA downstream 74731 9517986 ~ 9519727 (-) True G279624
TU331437 lncRNA downstream 108689 9485067 ~ 9485769 (-) True G279621
TU331436 lncRNA downstream 109510 9484093 ~ 9484948 (-) True G279620
TU331545 lncRNA upstream 24564 9624599 ~ 9625119 (-) True G279728
TU331548 lncRNA upstream 27302 9627337 ~ 9629153 (-) True G279730
TU331669 lncRNA upstream 204143 9804178 ~ 9804403 (-) True G279832
TU331737 lncRNA upstream 290597 9890632 ~ 9891233 (-) False cracr2ab
TU331824 lncRNA upstream 347296 9947331 ~ 9947536 (-) True G279967
XM_026923453.2 mRNA downstream 1192 9559911 ~ 9593266 (-) True asb13a.2
XM_026922643.2 mRNA downstream 171190 9392029 ~ 9423268 (-) True mkln1
XM_034313366.1 mRNA downstream 235408 9350878 ~ 9359050 (-) True LOC113531956
XM_026923675.2 mRNA downstream 247412 9338768 ~ 9347046 (-) True LOC113532331
XM_026923063.2 mRNA upstream 542 9600577 ~ 9615300 (-) True gdi2
XM_034312996.1 mRNA upstream 17373 9617408 ~ 9623595 (-) True ankrd16
XM_034312997.1 mRNA upstream 17373 9617408 ~ 9623591 (-) False ankrd16
XM_034313131.1 mRNA upstream 29296 9629331 ~ 9698196 (-) False pcloa
XM_026922721.2 mRNA upstream 29296 9629331 ~ 9689041 (-) False pcloa
TU331209 other downstream 385895 9207351 ~ 9208563 (-) True G279415
XR_003403340.2 other downstream 785120 8809220 ~ 8809338 (-) True LOC113532431
TU330637 other downstream 1374778 8218561 ~ 8219680 (-) True G278912
TU330291 other downstream 1526381 8053088 ~ 8068077 (-) True G278634
trnal-aag_11 other downstream 2000650 7593727 ~ 7593808 (-) True trnal-aag_11
trnay-gua_2 other upstream 22498 9622533 ~ 9622619 (-) True trnay-gua_2
TU332243 other upstream 669722 10269757 ~ 10296121 (-) False LOC113532274
XR_004579975.1 other upstream 1395070 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332827 other upstream 1638900 11238935 ~ 11259392 (-) True vegfab
TU333108 other upstream 1986269 11586304 ~ 11588024 (-) True G281074

Expression Profile