RNA id: XM_026923324.2


Basic Information

Item Value
RNA id XM_026923324.2
length 2082
RNA type mRNA
GC content 0.49
exon number 15
gene id ttll12
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 7539924 ~ 7560116 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

taaaataaatgaataaaaaagttttgGTCCTGTTCCTTTAACCGACGCTCCCATAATTCATTGCGGCACAGCGCTGTGCACGTGTGTTTTGGGCAGGAGTCTGAAAGCTGTCAGAAAACGGAGGTGAAAATGGAAAACGGGAGTGTGAATGAAGAAGAAGTTGAGGAGTATAAACTGTTTCTGGGTCTGCACAGTGCTGCTCTGAAGGCGGCTCGGATTCCGCCGCTGTACTGGAAAAGTCTGTATTATAAACTGAAACATGaggtGTTTGATGCCGGAGAGGTGTTTGGCATCATGCGCGTGGAACAGGAAGatgaggaaagagaggaagatgTACGAAAAACGTCCAACCCTGGTCATGAAGATTCTTATAAAGTGATTGTAACTCGAGAGAGTGGCCTGAAAGCTTCTGATCCGACCAGTGTATACCTGGTGGATCACGCCTGGACGTATCGGGTGGAAAGTGCCAGGCAGCAGCTGATAGAGGTTCCTGGACTATTGATCCGAATGGCCGATCTGATGGGTCTTCCTTTCCATGGTGAAGCCCCTGATCCTGACATCGTGGACCTGGTGCTGGAAAACATGTGGAAGTTTAATCAGACCTATCAGCTGTCTCAGGGGtctGCAGAGGAGAAGGTGCCCGTCTGGTACATAATGGATGAGTTTGGCTCCCATGTGCAGCACTCGTCTCAGCCGTCCTGCTGTATGGCTCCTCTGTTCTACGCTCCTCAACAGATCGCATATTCTGTGCTCTGGCCTCTGCAGGATCTGGAGAATGGAGATGAGGTGACGAGGGATTACTGTTACGGGGAGCCAGATTCACTGGTGAGGAAGTGTCGACTGTTACCATGGTTACCCGCTGACCTGGAAGGAGTGAGCAATGAGACTGTAGAGCCTGCTGACATTTATTATGAGACCATTTTACAGGAGAACAAAGAGAAGCTCCCAGTAGAAGTTGAAGCCTACAGTGTGCCTGATGGGAAAGTACTAAAggtCTACACAGAGATGAAGCAAGTTTTGGACCATCTGAAACATCCACAATTCCAATTCACCGAACAAGAAGATGAAGCCGACATACTCTGGGTGTATTCTCACATCCGTCATTATAAGAAGCTGAGTGAGGAGCGACCTCACGTCCTGCTGAACCAGTTCCCCTGTGAGACAGTATTAACCACAAAGGACTGTCTGGCATCAGTGGCGAGAGCCAGGCGAGGAGGACATTCACCGCCGTGGCTTCCCACGACCTTTAATCTTCAGACAGAGCTTCCACAGTTTATCAAACATTACCTACAGAGGCAGGAGAGAGGAGAAGATAATCACTGGATCTGTAAGCCCTGGAACCTGGCCAGAGGTTTGGATACACACATCACGAACAACCTCGACTACATCattcgacagagagagagcacccCAAAGGTGGTGTGTAAGTACCTGGAGGACCCCGTGTTGTTTGACCGAGAGGAGGTTGGTCTGGTGAAGTTCGACATCCGTTATATGGTGCTGCTGCGCTCAGTGCAGCCTCTGAGACTCTACGCTTACAACATCTTCTGGCTCCGTTTCGCCAACAGGCCGTTCTCTCTGGATCATTTTGATGATTATCAAAAGCACTACACGGTGATGAACTATGCTGAAGGTGTTCAGCTGAAACAGGTTCACTATGACGAGTTCATTCCTATGTTTGAAAAGCAGTATGCAGAATATCCATGGAAAGAGGTGGAGAGGGATATCTTCAAGGCATTTGCAGAGCTCTTTCAGGCTGCGTCATCCCGCCCTGCACCATATGGCATCTGCGCGTATCCGTCCTCCAGAGCGATATACGCCATCGACCTGATGCTGAAATGGGAACAAGCAGAAGGAGGAAATCGAGTAATGCAGCCTCAGATTCTGGAGGTGAATTTTAATCCGGACTGCAACAGGGCCTGCCTGTACCACCCCAGCTTCTATAACCACATGTTCCAGACGCTGTTCCTGGATCAGGCTGATCAGTGTCCTGTCACCCAGATCGTGTAACTCCCCTAGCTTTCAGCATATGCTGGACTTTGTTGCTCTTAAGTGAAATAAAGGTGATGTGATGCTTCAGAA

Function

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process

KEGG:

id description
K16609 TTLL12; tubulin--tyrosine ligase-like protein 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579997.1 lncRNA downstream 5642 7530784 ~ 7534282 (-) False LOC117599592
XR_004579998.1 lncRNA downstream 5643 7530784 ~ 7534281 (-) False LOC117599592
XR_004579996.1 lncRNA downstream 5643 7530784 ~ 7534281 (-) True LOC117599592
TU329920 lncRNA downstream 43661 7495572 ~ 7496263 (-) True G278312
TU329881 lncRNA downstream 114009 7424842 ~ 7425915 (-) False camk1da
TU330151 lncRNA upstream 236719 7796835 ~ 7879017 (-) True G278520
TU330235 lncRNA upstream 406703 7966819 ~ 7967421 (-) False avpr1ab
TU330636 lncRNA upstream 656897 8217013 ~ 8217293 (-) True G278911
TU330657 lncRNA upstream 678858 8238974 ~ 8239676 (-) True G278920
TU330707 lncRNA upstream 829382 8389498 ~ 8390559 (-) True G278963
XM_034313286.1 mRNA downstream 11981 7510088 ~ 7527943 (-) False LOC113531701
XM_026922562.2 mRNA downstream 11981 7510176 ~ 7527943 (-) True LOC113531701
XM_034313285.1 mRNA downstream 11999 7510176 ~ 7527925 (-) False LOC113531701
XM_026922817.2 mRNA downstream 39845 7421988 ~ 7500079 (-) True camk1da
XM_026923502.2 mRNA downstream 136417 7391215 ~ 7403507 (-) True optn
XM_034313356.1 mRNA upstream 33 7560149 ~ 7592040 (-) True pnpla3
XM_034313355.1 mRNA upstream 1086 7561202 ~ 7592039 (-) False pnpla3
XM_034313354.1 mRNA upstream 1127 7561243 ~ 7578390 (-) False pnpla3
XM_026923325.2 mRNA upstream 1253 7561369 ~ 7578390 (-) False pnpla3
XM_026923327.2 mRNA upstream 20046 7580162 ~ 7592040 (-) False pnpla3
trnam-cau_46 other downstream 1436777 6103076 ~ 6103147 (-) True trnam-cau_46
XR_003403345.2 other downstream 1506731 6033029 ~ 6033193 (-) True LOC113532437
TU329048 other downstream 1547990 5981138 ~ 5991934 (-) False copg2
TU329042 other downstream 1555360 5982292 ~ 5984564 (-) True G277575
TU328176 other downstream 2567679 4970314 ~ 4972245 (-) False tmpoa
trnal-aag_11 other upstream 33611 7593727 ~ 7593808 (-) True trnal-aag_11
TU330291 other upstream 492972 8053088 ~ 8068077 (-) True G278634
TU330637 other upstream 658445 8218561 ~ 8219680 (-) True G278912
XR_003403340.2 other upstream 1249104 8809220 ~ 8809338 (-) True LOC113532431
TU331209 other upstream 1647235 9207351 ~ 9208563 (-) True G279415

Expression Profile