RNA id: XM_034313356.1


Basic Information

Item Value
RNA id XM_034313356.1
length 3103
RNA type mRNA
GC content 0.43
exon number 9
gene id pnpla3
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 7560149 ~ 7592040 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATTGAcaaggacagaaagaaaaccACAGTGAGCAAGAGTTTCACCGGTGAGTGAAGGCATGACTGGTGCAAACCACCGGCGTTATTAAGAAACACGAAGTAGACTCTTAATCTGCGGGTATGTTGGACCTGAGTGCGGGGTGGAACCTGTCGTTCGCCGGTTGCGGGTTTTTAGGGATTTATCAGCTCGGTGTTTCCAGCTGCCTCCTGGAGCGCGCGCCTTACCTCGTCCACCGAGCCAACAAGATCTACGGAGCTTCAGCTGGAGCTCTCAATGCAGCTGTGCTCACCAGCGGAACATGCctagaaaaatgttgCATAATAGTGATCGAGGTTGCTAAGGAGGCCCGGAAGCGCAACCTTGGCCCTCTGCATCCCACCTTCAACCTACTCAAAGTGCTGCGCTCGTGCCTGCAGCGAGACCTGCCTgaagatgcacacacactcgtcagcggcaggctgtgtgtgtctctcacacGCGTCAGTGACGGGAAGAACGTGCTGGTCTCGGACTTCAGCTCCAAAGATGAGCTCATTCAGGCACTTATCTGTAGCTGTTTCATCCCTGTTTATTGTGGTCTGTTCCCTCCCACCTTCCGTGGAGTCAGGTACGTTGATGGTGCGATGAGTGATAATCTCCCCCAGTCGGAGCTGAAGAACACCATCTCCATCTCACCATTCTCTGGAGAAAGTGACATTTGCCCCAAGGACAATTCGAGCAGCTTCCATGAACTACGATTCACCAACACTAGCATTCAGGTCACTTGGGGAAACATGAGCAGGCTCAGCAAAGTTCTTTTCCCTCCTGAGCCTAAGGTAATGGCGGAGCTATGTCAGCATGGGTATAAAGATGCTCTGCGATTCCTCGAGGACAACAATCTATTGCAAGTTGAATGTCCAAAAGTAGATCTAGCCTTGACGCGGGACACGCCCACCTGCTGCTGTGTCACTGAGTCGACACGAGAGTGGATGCTGCGAAGATTCCGCCTCCTGGGGGAGCATCACTGGTGGTTGGAGGAGCAGCGTGTCAATTACCTGCCCACACCCATTAAGAAAGtgttctGTGAGGCGTGTAAAGAGAAGCATGGCCTAATGGCTCAGATCACTGGTCTGTTGCCGGTACGTGTGGCTTCCTACATGCTGATGCCCTACACGCTGCCAGTAGAGTCGGCTTACTCAGCAGTCCAGAGgtttgtggAATGGATTCCAGAGGTGCCTGATGACACACGCTGGCTTTTTGAGATGGCAGGAAGTGTTTATAAACAGGCCTGGAAAGGAGAATCCTCAAAAGGTGGCTTTCCATTGCGGCGGTGTGTAAGTGGACCACCCTCACTGGACCTGCAGCCACATGACATGGAGCACAATAGACACGCCACTTTTTCTGTTGCTGATTTGCGTGATTACAGCTGGGATTACTCAGAAAGCCCTGAGGACCCCGACAGTCCGTGCACATCTCCTGAGCAGATCAGAATGTATGTTGGCTCACAGGACAATTCTGAGAGCTGAATACAGCAAGACATGGAAATGGAAGTCTGAAAATACAGGTGTTTCACACaccataaatgtgtgtgagagagatgaggGGGTTTTATGGTGGAGTTTTGCCTTAATTCCACTTTTTCTATTCACCATCTCTCACCAGTAACACTGGTCTAAGCTCCCAACTGCACTTTAAACTAGAGTTCATCAAAATGTCCTGTAAAATAACcaacaaatattaaaagaatGGTAGCATTTGTGGAACAAAAAGTCAGGTGATGTAATGGTGAAggtagttttttaaataatgatggCTGTGACATTTCTACGTGCACctcaaaagagaaaacaaacaaccaaTGTCACctcaacagaaataaaatgttggGTAAAATGTGTTGtccaaataaataattgatttcTGTGAAacctaattataataatgtgaataaatacaatatacagtcaACCCCAGAATGATTGGTACCCTTCATTAAAATAAGCAAAAcataatatatgatataaaaatgcattttttaaaccaattcTGCAACTTTATAATTATGATCCTGACGATGctcaattatatatttataaccaAAAAATGCATATGTTTTTCCCAGGAtgaaaatttgcatttattataattatattataatagatTAATCAGCTCATGTAGTTGGAAGCTAAAACTACTGCTTGGCCAGTGGTGGTCAGTTGTTAAGGTTCTGGGCTACTCATCAGAAGGGtgtgagttcaatccccagcacacTGTCGGGCCCTTTAGCAAGGCcattaaccctctctgctccggGGGTGCTATCATGACTGACCCTGCAGTCTGACCCCAACTCTCTAAccagctgggatatgtgaagggATTTTGAAGGTTCTAGACCTCAAACTAGTTTCGAAGACaatgttttgtaattttgtgcCTGATAAACACAGGAATAGGGCAATAAATAAAGATGTCCTACTAAACTGGACAAGGTTAAATGTAGGGTGAATGTAGCGGAggattaaaatgtgatttataaaaatgtaaatatcccacaataaaattacaatCTGACCATTTAACTTTCACATAAAATGCTAAGTTAAAAGTATATTCATCTTTCATCCCAAAACTTGTCCATCTTTTTCATTTCCAAGTATAAACCATCAGATTTCAGTAATGTCACATAAAGATTCTCAACATTCTCAGGCCATGTGTAAGAAAAATGGCAGTCTTGCTACTTCAATTCCTGTGACACAGGCTCATGGTCAAGACATTTCTATTTTCCTACAACCTTCAGAATTAACAAAAATCAATTTACTACAGTGAAATTAATATCAGTTGATAACGTACTCCAATATACACAGCAgatattattaaatgtgtagCAATTGCATGATTGATTATGAAgtgattattattgaaaaaggaTAGACAAATagtgtataaaaaataattaatattttaaaacgtGAACGAACAGTAGTCCAGCTAACAAAATTACGTTGCCATTACGTCATTACGTAGCCACGTTTCCTGATGTCATAGCAACCTACTACATACCCTGTGACAAGCAGAAAAGTGAAAGTACTACATGTGTTAGACTGAATGTTGAGGAGTGct

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0001889 liver development biological_process
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579997.1 lncRNA downstream 25867 7530784 ~ 7534282 (-) False LOC117599592
XR_004579998.1 lncRNA downstream 25868 7530784 ~ 7534281 (-) False LOC117599592
XR_004579996.1 lncRNA downstream 25868 7530784 ~ 7534281 (-) True LOC117599592
TU329920 lncRNA downstream 63886 7495572 ~ 7496263 (-) True G278312
TU329881 lncRNA downstream 134234 7424842 ~ 7425915 (-) False camk1da
TU330151 lncRNA upstream 204795 7796835 ~ 7879017 (-) True G278520
TU330235 lncRNA upstream 374779 7966819 ~ 7967421 (-) False avpr1ab
TU330636 lncRNA upstream 624973 8217013 ~ 8217293 (-) True G278911
TU330657 lncRNA upstream 646934 8238974 ~ 8239676 (-) True G278920
TU330707 lncRNA upstream 797458 8389498 ~ 8390559 (-) True G278963
XM_026923324.2 mRNA downstream 33 7539924 ~ 7560116 (-) True ttll12
XM_034313286.1 mRNA downstream 32206 7510088 ~ 7527943 (-) False LOC113531701
XM_026922562.2 mRNA downstream 32206 7510176 ~ 7527943 (-) True LOC113531701
XM_034313285.1 mRNA downstream 32224 7510176 ~ 7527925 (-) False LOC113531701
XM_026922817.2 mRNA downstream 60070 7421988 ~ 7500079 (-) True camk1da
XM_026923401.2 mRNA upstream 51407 7643447 ~ 7690136 (-) True mpped1
XM_026923004.2 mRNA upstream 108992 7701032 ~ 7786479 (-) True scube1
XM_026923005.2 mRNA upstream 108992 7701032 ~ 7786478 (-) False scube1
XM_026923322.2 mRNA upstream 234249 7826289 ~ 7830138 (-) True c18h12orf45
XM_026923000.2 mRNA upstream 279704 7871744 ~ 7924698 (-) True chst11
trnam-cau_46 other downstream 1457002 6103076 ~ 6103147 (-) True trnam-cau_46
XR_003403345.2 other downstream 1526956 6033029 ~ 6033193 (-) True LOC113532437
TU329048 other downstream 1568215 5981138 ~ 5991934 (-) False copg2
TU329042 other downstream 1575585 5982292 ~ 5984564 (-) True G277575
TU328176 other downstream 2587904 4970314 ~ 4972245 (-) False tmpoa
trnal-aag_11 other upstream 1687 7593727 ~ 7593808 (-) True trnal-aag_11
TU330291 other upstream 461048 8053088 ~ 8068077 (-) True G278634
TU330637 other upstream 626521 8218561 ~ 8219680 (-) True G278912
XR_003403340.2 other upstream 1217180 8809220 ~ 8809338 (-) True LOC113532431
TU331209 other upstream 1615311 9207351 ~ 9208563 (-) True G279415

Expression Profile