RNA id: XM_026923329.2


Basic Information

Item Value
RNA id XM_026923329.2
length 3205
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC113532144
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 10618918 ~ 10629763 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctctctccttctctctctctccttctctctctgttgatctgtctgtctgttcctcacaaacacacaggggTAGACGCCCCTCCACAGCCCCTCCACaggctgcagtggtgtgtgtacTGCGGGGGTGAAACCTCTCAGGCAGACATTAGGCAGTGGTTGAATAGGTAGAGCTGGTTGAAGAGGTAGAGCTGTCACAGGTCATTAAACGAGGTAACCACAGGAAACTGATTGAGGACTGATTTAAGATGACAGTGACTTACTCCAGTAAAGTGGCTAACGCCACCTTCTTCGGTTTCCACAGACTGTTACTGAGGTGGAGAGGCAGCATTTACAAACTGCTCTACCGTGAATTTctcatttttgttcttctttacTCCATCCTTAGCTTCATCTACAGATGGGTGCTTACAGATCCTCAGAAGCGTTTCTTTGAAAAACTGTCTATATACTGTGATCGATATGCTGAACAGATCCCTGTCACATTTGTGCTTGGTTTCTACGTAACGCTGGTAGTGAACCGCTGGTGGAATCAGTTTCAGAACCTGCCGTGGCCTGACCGGCTCATGTTCCTCATTTCGAGCTGTGTTCAAGGTCAGGACGAACATGGACGGTTGTTGCGGCGCACACTAATGCGCTACGTCAACCTCACCTCACTGCTTATCTTCCGCTCAGTGAGCACTGCGGTGTGCAAGCGTTTCCCTACCATTGACCATGTGGTGGACGCAGGCTTCATGACATCAGAGGAGAGGAAGATCTTTGAGAACCTCAAATCACCACACCTCAAATACTGGATCCCTGTGGTGTGGTTCACCAATCTTGCCTCCAAGGCAAGGAAAGAGGGGCGAATACAAGACAGCGTGGATCTTCAGACCATACTTACCGAGATGAACAAATTCAGGACCTGGTGCTCTACTTTGTTTGGATATGACTGGGTTGGGATCCCCTTGGTTTACACACAGGTTGTAACACTGGCTGTCTACACATTCTTCTCAGCCTGCATCATCGGCCGACAATTTCTTGACCCCGCTCAGGGTTACCAGGGACACGACCTTGACTTTTACGTGCCCATCTTCACATTGCTGCAGTTCTTCTTCTATTCGGGATGGCTTAAGGTAGCAGAGCAGCTCATAAACCCATTTGGAGAGGATGATGATGACTTTGAGGTCAACTGGTGCATTGATAGGAACCTGCAGGTGTCTCTGATGGCAGTGGATGAGATGCATATGAACATTCCCCACATGACTAAAGATATTTATTGGAATGACCCTGATGTACGACCACCATATACCCTCGCTGCTGCAGACTACTGCATCCCGTCATTCTTGGGCTCCACTACTGACATGGGTCTCTCCGAGATATTACAGAGTGAGGACGTTGATACCAACAACCTACGGGGGCAGGCCACAGTTCTGGGTCGCATGCGTCGCTTGCTGAGCGTCCAGGAGCCCATAGATCTATACATGCGTCCATCTTTCAAACGCCACAGCAGTGACAGCCCCAGTTTCGTACCGTTTAGTCAAGACCACCATTTTCACTCCAGAGTGGAGGAAAACATGCAGACTCACTCCAAGCTAAATTCCAATGCACACTTTTACCCTCTTTCCACTGTCAACGAGGTGAACAGCACCACATCTTCTCCTGAAGTCTCGATACACACCCCTTTTCCCAACAACATACCTTCAGTAGTGATTAGTGAACCCCATCTAGGAGActtcagtgacagtgacagtgttgtGCTGGAGCGCACAGGATGTACACTATCTGAGGAATCTTCATTAGAGTCAGCTCAGGTCCAGGAGCATTGTGACAAGCATCGTGGAGAGGAGGTGAACACAGCAGAAGGTGTTACAAACACAGAATCCAGGAGTTTTGGCCACTTTTCTCCAGCTAGCAAGAGGAAAAGGAATAAACTATCATTTCAGCTGTCGAGAcagagctcagtgaattccacaAAGACATTTCCAAGCCCCAAAGATGTCCTAAGAAGAAAAGATCACCTTGTTAACCAACAGCAGGAAACTCTGCAGTTTGATTCCACACATCCAAAACAAGCATCTGAAACTGTAGACTCAAGTAGCCAAGAGACAGAACAGAGAAGAAACCAAGATGGCTGAAAGCAGCTCTTTGACAATTCAAACTGGAATGTTTGACCCAAACTCAGGTGACTCCAGCACTGGTTGGAACTCTGATCTGGATTTTCGCTGTGCAGCCTGTTGGAACTCCTTGGAGTGCACACACTTTTAGATGATATACAGAAGTCAGTTATCTTTCCCTGAACTGCAAAGTGTGAAGAACATTTTTTCAATTGCtatatcaatatttttatttactaagtcgttattttgacttactaaatcattattttcaaaataacaagatactaattcaaaataatttgtaagtgaaaataatgagatactaaggcaaaataacaatttattaagtcaaaataatgagattcTAAGTCAAAATGAGATACGAAGTCATAATAATGACTTAGTAAGTGAAACTAAGtaatgagatactaagtcaaaataacgagatactaagtcaaaataagattctaagtcaaaataatggcTAAGTAagatactaagtcaaaataacaagacactaagacaaaataatagataataaaaatTTAGTAAGTCAGTAAAATACTAATTCATATTttagtaagtcaaaataacaggATACTAAGACAAAATAGCGAGATACTAAGTTGAAGtaatgagatactaagtcaaaataacgaCAGTTagtcaaaataacaatatatGAAGTCAAAAGAAGATACTAAGTACAAATAAGATACTAagacaaaataacaagatactaAGCCAAAATGAGCCAAAATACtgtcaaaataatgacttaCTAAGTGAAAATAAAGACGTAGAACTTGAAACAAAAATTTCACATCTTGTGGTTCAGGGCATCTGTAATCTTGTACTTGAAAGTTATGTGATATAAGCCATGTCCATATAGTGGCCTAGCCATGAAAATGCTTTATGTGACTTGAAAATTTCAGTGAGCATTTCAaatggaagtgtgtgaacattttccTAAAGCATTCTCCTGTTTTACAACTACACTTTAAGTGTTTACTTTCCATAGCTCAATTCACTGTTAATATCTTCCAGAGAGAATATTCATGTGCAAGAGGATTAAACAGCATTAAAAAGACTGACAtgattaataatg

Function

GO: NA

KEGG:

id description
K13880 BEST3, VMD2L3; bestrophin-3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332301 lncRNA downstream 105765 10418918 ~ 10513153 (-) True G280384
TU332265 lncRNA downstream 148543 10468686 ~ 10470375 (-) True G280360
TU332320 lncRNA downstream 153288 10463954 ~ 10465630 (-) True G280398
TU332306 lncRNA downstream 183072 10430631 ~ 10435846 (-) True G280389
XR_004579870.1 lncRNA downstream 322720 10255972 ~ 10296198 (-) True LOC113532274
TU332463 lncRNA upstream 147000 10776763 ~ 10777897 (-) True G280527
TU332558 lncRNA upstream 153598 10783361 ~ 10784293 (-) True G280615
TU332595 lncRNA upstream 276410 10906173 ~ 10908630 (-) True G280640
TU332613 lncRNA upstream 300975 10930738 ~ 10930980 (-) True G280652
TU332738 lncRNA upstream 449405 11079168 ~ 11079487 (-) False sobpb
XM_026922702.2 mRNA downstream 70577 10532781 ~ 10548341 (-) True slc13a4
XM_034313222.1 mRNA downstream 106769 10470536 ~ 10512149 (-) False ptprz1b
XM_026922785.2 mRNA upstream 154565 10784328 ~ 10828385 (-) True ptprb
XM_026923231.2 mRNA upstream 201123 10830886 ~ 10885436 (-) False ptprr
XM_026923230.2 mRNA upstream 201123 10830886 ~ 10885436 (-) True ptprr
XM_026923233.2 mRNA upstream 201123 10830886 ~ 10854584 (-) False ptprr
XM_026923232.2 mRNA upstream 201123 10830886 ~ 10854584 (-) False ptprr
TU332243 other downstream 322797 10269757 ~ 10296121 (-) False LOC113532274
trnay-gua_2 other downstream 996299 9622533 ~ 9622619 (-) True trnay-gua_2
TU331209 other downstream 1410355 9207351 ~ 9208563 (-) True G279415
XR_003403340.2 other downstream 1809580 8809220 ~ 8809338 (-) True LOC113532431
TU330637 other downstream 2399238 8218561 ~ 8219680 (-) True G278912
XR_004579975.1 other upstream 365342 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332827 other upstream 609172 11238935 ~ 11259392 (-) True vegfab
TU333108 other upstream 956541 11586304 ~ 11588024 (-) True G281074
TU333129 other upstream 1028127 11657890 ~ 11660327 (-) True G281092
XR_003403346.2 other upstream 1951160 12580923 ~ 12581063 (-) True LOC113532438

Expression Profile