RNA id: XM_026923349.2


Basic Information

Item Value
RNA id XM_026923349.2
length 2751
RNA type mRNA
GC content 0.57
exon number 17
gene id sox5
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 5080812 ~ 5315907 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaaaaaaaaaatccacactcCACATCCTGAGACTCTTCTCCTGCGGATAAAGCGTGCAGCTGTTCGgattcCTGCGTTCACCGATGGCTCAGTGGTGTGAAGACAGGCTTTCGTCTCCGTCCCGCTGTTAGTAGTTGAGTTGAATTAAAATCCAGAACATTCTACAGACTCGACCTCACAGAGACCAGTACAGCAAGGGGCTCACTGGATGTCTTCCAAGCGACCAGCCTCTCCATATGGGGGAACAGATGGAGAGGTAGTCATGGCGACGAGCAGACAGCGATTGGACGATGACGAGGTTGACGGACATGCTGTCATTCACCTGCCCCTGAGCTCGTACTGCAGCTCGCCACGCGCCCCGGACAGCCCGCCCACACTACACAGCAGCACGGAGCAGGAGAGCAGTAAAGGCCAGGCCCTGAGCCCATACCCCCAGCACAACTCTTCTACCTCACCCAGTAAACAGCAACAGCAGGACGAGGGCTCAGGTTCGGCCACGGCTCTGGGAACGCCGGAGAGGCGTAAAGGCAGCCTGGCCGACGTAGTGGACACGCTGAAACAGCGCAAGATGGAGGAGCTGATCAAGAGCGAGCCTGAGGAGGCCCCCAGCATTGAGAGGCTTCTGTCCAAGGATTGGAAGGACAAGCTGCTCGCGATGGGCTCCGGTCACTTCGGAGAGATCAAAGGTACCCCGGACAGCCTGGCGGAGAAGGAGAGGCAGCTGATGGGGATGATCAGCCAGCTGAGCAGCCTGAGGGAGCAGCTGTTAGCCGCCCACGAGGAGCAGAAGAAGCTGGCCGCCTCGCAGATCGAGAAACAGAGACAGCAGATGGAGCTGGCCAAGCAGCAGCAAGaccagATTGCTCGACAACAACAGCAGCTTCTGCAGCAACAGCACAAAATCAACCTCCTGCAGCAACAGATCCAGcaGGTCCAGGGTCAGCTGCCACCTCTGATGATTCCTGTTTTCCCTCCAGACCAGAGGACTCTGGCAGCAGCCGCAGCCCAGCAAGGATTCCTCCTGCCCCCAGGCTTCAACTACAAAACCGGCTGCActGACCCATACCCCCTTCAACTGATCCCAACCACCATGgcagctgctgcagctgccacaCCAGGCCTCGGACCTCTTCAGCTTCAGCAGCTGTATGCAGCTCAGTTGGCAGCCATGCAGGTATCTCCGGGGTCCAAGCACAGCGCCGTGCCCCAGCCCAACCTGGCAGCAGGAACGCACTCGCCTACCAGTGGCCAGAGCGAGAAGAGCAGGAGCAGCCCACCACCCAAGGCCAAGGACGAGGGCGCTCAGCCCCTGAATCTGTCATCCAAGCCTAAGACATCCGAGAGCAAGTCACCCACCTCCCCCGCTTCCCCACAGGTCCCTGCCATGAAGCTGGGTCCCGGATCCATGAAGCACAGTGCCCCCTCAAGCATCGGAGGACCTCCACCCAGAGTCAGCTCCATAGACCTGCTGTCCTCCATCACTTCTGGAGGCTACCTGAACGACCACGAGGCCGTGAGCAAGGCCTTCCAGGAGGCACGGCAGATGAAGGAGCAGCTGAAGAGAGAGCAGCAGGTCCTGGATGCCAAAGTGGCAGCGGTTAACAACCTCACCCTCAACAACGGACGCTTGGAAAAGgaGAAAGCAGCTCTTGAAAGCCTGAGTCAGCAGATGAAACAGTCCGAGGAGAACAAGTTCACTCACGCCATGATGGACTTCGGCATGAGCGGCGACTCCGACGGCAGCCCCAGCGTGTCAGATTCGAGGATTTTCCGCGAGGCTCGAGGTCGTGGTAACGGTGAACCACACATCAAGAGGCCCATGAACGCCTTCATGGTTTGGGCAAAAGACGAGAGGAGGAAAATCCTGCAGGCTTTTCCCGACATGCATAACTCCAACATCAGCAAAATCCTCGGTTCTCGCTGGAAGGCTATGACTAATCTGGAGAAGCAGCCGTACTACGAGGAGCAGGCTCGTCTCAGCAAGCAGCACCTGGAGAAATACCCCGACTACAAGTACAAGCCGCGGCCCAAGCGCACCTGCCTGGTGGACGGCAAGAAGCTGCGCATCGGCGAGTACAAGGCCATCATGCGCAACCGCAGACAGGAGATGCGTCAGTACTTCACTGTGGGgcagCAGGCCCAGTTGCCGCTCTCCTCAGCGGGCGTGGTCTACCCCGGCGCTCTGTCCATGGCGGGCATGCCGTCCCCTCAGATGCCGTCTGAGCACTCGAGCATGTCCAGCAGCCCCGAGCCAGCTCCGCCCACCGGCCCGCCCTCGTACCTCAGCATCAGCAAGGGGGACGAGCCTCGCATCAAGGAGGAGGTGCTGCGGATGGACGAGAGCAACGGCGACGCCTACGACGACTTCGACTACGAGGACGAGGACGGAGACTTCGGCAGCGACAGCGAAAATCACGTCGcgcagtaaataaaaaaaaaaaacacttttttttggaGCTGATCCCTCGTTTCTTGTCCCGCCCTGCCTCTATTCCACCCAATCAGGACTCAGAAAGAGCCACACCCACAACCCCCTCCTAACCCCTCCCTGATACCAGCAGCAGTAAAGCACAGGACGTGTCAGAGTAACTGTTACACTAAATGAGAACGTCGGACGTCACGTGAGCGAACACATCTCGAGTAAGCTACAGAAAGTAAGATATGATAAGATAAGGaaactttcacaaaaaaaaaaacttattataataaaaaaacaggacCTGTTCTTCGGCCTGTCACTTTAAAACGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403297.2 lncRNA downstream 135534 4943549 ~ 4945278 (-) True LOC113531850
TU328123 lncRNA downstream 199804 4880418 ~ 4881008 (-) True G276753
TU328138 lncRNA downstream 204020 4817108 ~ 4876792 (-) False G276761
TU328142 lncRNA downstream 218705 4817108 ~ 4862107 (-) True G276761
TU328136 lncRNA downstream 239058 4817108 ~ 4841754 (-) False G276761
TU328476 lncRNA upstream 39993 5355900 ~ 5358204 (-) True G277065
TU328477 lncRNA upstream 42544 5358451 ~ 5359228 (-) True G277066
TU328891 lncRNA upstream 131244 5447151 ~ 5448687 (-) True G277443
TU328897 lncRNA upstream 244027 5559934 ~ 5560268 (-) False G277447
TU328898 lncRNA upstream 244027 5559934 ~ 5560322 (-) True G277447
XM_026923007.2 mRNA downstream 77021 4988481 ~ 5003791 (-) True strap
XM_026923411.2 mRNA downstream 96511 4966232 ~ 4984301 (-) True tmpoa
XM_034313267.1 mRNA downstream 115719 4954291 ~ 4965093 (-) False slc25a3a
XM_034313265.1 mRNA downstream 115719 4954291 ~ 4965093 (-) True slc25a3a
XM_026922781.2 mRNA downstream 141999 4925716 ~ 4938813 (-) True ldhba
XM_026923526.2 mRNA upstream 23866 5339773 ~ 5361979 (-) True bcat1
XM_034312990.1 mRNA upstream 89567 5405474 ~ 5419057 (-) True casc1
XM_034313035.1 mRNA upstream 148406 5464313 ~ 5487007 (-) False parpbp
XM_034313034.1 mRNA upstream 148406 5464313 ~ 5487003 (-) False parpbp
XM_026922759.2 mRNA upstream 148406 5464313 ~ 5486990 (-) True parpbp
XR_004579951.1 other downstream 96497 4968253 ~ 4984315 (-) False tmpoa
TU328176 other downstream 108567 4970314 ~ 4972245 (-) False tmpoa
TU327987 other downstream 341813 4734931 ~ 4738999 (-) True G276650
LOC117599580 other downstream 493820 4586256 ~ 4586992 (-) True LOC117599580
LOC117599581 other downstream 503774 4576470 ~ 4577038 (-) True LOC117599581
TU329048 other upstream 665231 5981138 ~ 5991934 (-) False copg2
TU329042 other upstream 666385 5982292 ~ 5984564 (-) True G277575
XR_003403345.2 other upstream 717122 6033029 ~ 6033193 (-) True LOC113532437
trnam-cau_46 other upstream 787169 6103076 ~ 6103147 (-) True trnam-cau_46
trnal-aag_11 other upstream 2277820 7593727 ~ 7593808 (-) True trnal-aag_11

Expression Profile