RNA id: XM_034313280.1


Basic Information

Item Value
RNA id XM_034313280.1
length 3623
RNA type mRNA
GC content 0.47
exon number 24
gene id snap91b
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 11610133 ~ 11639731 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGCCAACCGCTGACAACCGAGTAGGACAggacactgtctctctctctctctcttactcacgGTGTAGGGAATAAAACCGATACCGTTCCAGAATACTAATTCTAGGAAATATCAGTCGCCATTCATCACCAGCTGTACAGAGAACAGCCTTGCACAAGAGCATCTTTGCTTTGGTGAAGGAAAGGACACAGACAGAGGACACCGCGCGCGACATCCTGAAAAGGgagctttatattttttttggccatttcGGGTTGCATTTCCTCATTCTACCACATTCAGGACGTTTCGGATCATAATTCTtagaatttgttttattttttaatttctagtGAGATCCGGAAGATCCGGTAGCCTACGTCACCGACGTAACCTCTCGCGTTACGTAACACCGAGGAGCGCAACCGTGCGCCAAATCCCTCATGTCAAGACGCACACCTATGTGTTCATTATAGGATCTGAAGAAGAGCCGCATATCTATTCTTGTTATTTGTGCACCATTATTTAGGCTGCTTGCTTTGGATCCAGGTTCTATTTGTCGGCCACCAGCCTATGTTCTTGCTCCGTCGGTTCATTCCTTAGTGCGAAACGGattggtgaggaaaaaaaaacatgtcggGCCAGACGCTGACGGATCGCATCGCCGCCGCGCAGTACCAGCTCACCGGCTCGGACGTGGCTCGGGCTGTGTGTAAAGCTACCACACACGAGGTGATGGCGCCTAAGAAGAAGCACCTGGACTATCTGATCTCCGCCACCAATGAGACCAACGTGAACATCCCACAGATGGCTGACACTTTGTTCGAGAGGGCCATGAATGCCAGCTGGGTGGTTGTCTTCAAAGCACTCGTCACCACACACCACATGTGTATCCATGGCAACGAGAGGTTTATCCAGTACCTGGCCTCCAGGAATTCACTGTTCAACCTCAGCAATTTTATCGACAAAACCGGTACTCATGGCTACGACATGTCTACATTTATCAGACGATATGCGCGGTACCTCAACGAGAAAGCGTACTCTTACCGTGCAATGGCCTTCGATTTCACTCGAGTCAAGAAAGGtgctgaAGGAGTGATGAGGACTATGGCTCCTGAGAAACTGCTTAAAGCTATGCCAGCTTTGCAGACTCAAGTGGACACCCTACTGGAATTTGATGTTCATCCCAAAGACTTGAACAATGGCATCATCAATGCGGCTTTCATGCTTCTCTTCAAGGACCTGATTAAACTCTTTGCCTCCTACAATGATggaattattaatttattagagaaatatttcaaaatgaagaAGTCTGACTGCAAGGAGTCGCTTGAGATCTATAAGAAGTTTCTGACTCGAGTAACTAAGATTTCAGAGTTTATGAAAATTGCAGAGCAAGTTGGCGTGGACAAAAATGACATTCCTGACATATCTTATGCCCCCAGCAGTATTCTGGAATCTCTGGAGACACACATGAACAGTCTAGAGGGAAAGAAAGGAGAGGGGTCTCCGACAAAGGGATCACCCACCAACAACGTCTCTCCAACGTCCACTCCCTCCAAATCTGCAGCCTCTGTGCCCACCCTGGAGCCGCCGCCCACCGAGGCCgcatctgctgctgctgcgccCGCTCCTGCCGAGCCTGCCACTGATTCTCTGCTGGACTTGGATCCGTTGTCTTCTTCAGGGCCACCTGCTTCATCTGCTCCAACATCCTGGGGAGATCTTTTGGGGTCAGAATTCGGTTCCCTCACTACGGAGACTCTCCTCCCTGATCCCACCCCTGCTGTAGACTCTACCTCTCCTGCGACAGCTGTGTCTAGTGCCCCAGCTGGTGAAGGCGCTGCTTCTGTAGCCCCTCCCTCTACCGCTGCTGGCCCAACCCCGAGCTCGGCGGATCTCCTAGGAGGTGCGTTTGGAAGCCCAGCAGCTGAACCAACCTCTGCTGTGGAGACGGGGGGTTCAGCCAACGCGACTGCCCCTGCCACTGATGCTTCTGCTGCAAATGACTCTGCAGGTGCAGGCAATGGCCAACCCACAGCTCCAGCACCAGCAACATCTGCAGGAGGAGATCTAATGGGAGCGTTCGGTGTCTTGGGGGATATGCTCATGCCAGCCATGGCTCCTCAGCCAGCTGGAGCAGCACCCATGGCAGCCTCACCAGTTAAACCAATGGGAGGGGATCTGGACTCTACTATGGCCAGTTTAGCTGGAAATCTGGGAATGGGGACCCAGAAGCCgGGTGAAGCAGCAGGAGGGGCGAACTGGCAAGCGCAGCCTGTGCCCTCCATGGTCTCTCCTCTCATGGGGTCCCACTTGCCATATGGCATGCCCGGTGCAACAGGTGCGGCTCCCATGATGTTCCCCCAGCAGCCTATGATGAGACCGCAGTTTCCTGCAGCAGGAGCACCTGCAGCACCGATGTCTTCTGGAATGACCCAGAGCCCCAGAAAGCCTCCTCCTCCCAAAGATCCCCTTGCTGACCTGAACATCAAGGACTTCCTATAGGTCACCATCAGCACGTCAGCGACTATGACCCTGAGGAAATGGATGTGTGCATTTCTTTTCAGACCAGTATCCTCAGGGTCTACTTccatccctccttctctctttctgtctaatGTTGTATTACAACCTGTGAAAGtgataatgtatatgtgtgtgtgcgtattttAATGTTTCCAGGCTATATTTAAAAAGACAACCCATAAAAAAAGGTATTGATGGATGCATCCTTGTACATCCGCAGTGGTGGATGtgtattcttttttgttttttccagcctgttttttttctgtgaggaacCCAAACAGATGTAATGTAACCCAAACAGGTGTAATGTTTTCTGTGGAGAAAAATAATGTGTTTGATGTGGTACATATCACTGGGCTCACTGGATCCATGTTGTCATTGAAGTATTAGTTGTCTAGCTCTTAGCCATACAGTTTCTGGGACCACATGAATGAACATAGCATTAACGGACGTATTAAGGTTTGTGTAGCATCTCCGCTCTGTTTTTGCTAATGACTtgcttttcttcctcttctgtcaGTGACATGTGACACGCAACATTGAACAAGGCCTATTAACAACCAATATGCATTTGGAATATTTTATCTTTAGTCTTTATTTTGAGATAAAAGAATCTATTTTAGTTATGTTGAAAGTACTTTATGTATTAAAAGAGGTGGTACAAAATATTTCCGGTTGTAAAAATACATGTATTCCTGCCACCTGAATGCAATCTAGCTCTGTTTAACAGCACCTTGTAGTGAATTGTGGTAGTGCACAAGAGCACAACAGTTCCTTGGATCTTAAACTGGAGCAAGATGGCAagatatttacaaattacatctacAAAACCATCTACCATTGGTTTTACCATCAGTCCATTATACTGACTAAACTGGCTTTTTGATGTTTTGATCCATTGCAGTaaggaaatgtggaaaaaaaaaaccctggttGGTGGAAAGACtggtggaataatgttatattaaCAATGGATGTGCTGgttagttttgttttcttttttggtgGATCTTAATTTTTTGGATGTAATAACCCCCCTCTGTCCCGATATTCTTCTGTGCATGTAAGTCCTGTTGAAATGCAATAAACAGTTACCTGGAAAACACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333109 lncRNA downstream 20446 11589003 ~ 11589687 (-) True G281075
TU333104 lncRNA downstream 26496 11583393 ~ 11583637 (-) True G281070
TU333091 lncRNA downstream 48069 11561725 ~ 11562064 (-) True G281057
TU333037 lncRNA downstream 250497 11359362 ~ 11359636 (-) True G281021
TU332834 lncRNA downstream 350142 11259791 ~ 11259991 (-) True G280841
TU333143 lncRNA upstream 67959 11707690 ~ 11710984 (-) True G281102
TU333155 lncRNA upstream 99999 11739730 ~ 11752892 (-) False dusp16
TU333441 lncRNA upstream 393365 12033096 ~ 12036362 (-) True G281362
TU333459 lncRNA upstream 454126 12093857 ~ 12094059 (-) True G281373
TU333565 lncRNA upstream 611583 12251314 ~ 12254155 (-) True G281455
XM_026923285.2 mRNA downstream 8728 11596768 ~ 11601405 (-) True atp6v1e1b
XM_026923415.2 mRNA downstream 13556 11589813 ~ 11596577 (-) True ada2b
XM_026923559.2 mRNA downstream 117864 11487504 ~ 11492269 (-) False foxm1
XM_026922860.2 mRNA upstream 81332 11721063 ~ 11752913 (-) True dusp16
XM_026922859.2 mRNA upstream 84125 11723856 ~ 11747201 (-) False dusp16
XM_026923546.2 mRNA upstream 121050 11760781 ~ 11768919 (-) False gpr19
XM_026923545.2 mRNA upstream 121050 11760781 ~ 11768918 (-) True gpr19
XM_034313339.1 mRNA upstream 121050 11760781 ~ 11766409 (-) False gpr19
TU333108 other downstream 22109 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 350741 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 602990 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332243 other downstream 1314012 10269757 ~ 10296121 (-) False LOC113532274
trnay-gua_2 other downstream 1987514 9622533 ~ 9622619 (-) True trnay-gua_2
TU333129 other upstream 18159 11657890 ~ 11660327 (-) True G281092
XR_003403346.2 other upstream 941192 12580923 ~ 12581063 (-) True LOC113532438
TU335292 other upstream 3534617 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 5318793 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 5463834 17103565 ~ 17103637 (-) True trnar-ccg_5

Expression Profile