RNA id: XM_034313350.1


Basic Information

Item Value
RNA id XM_034313350.1
length 968
RNA type mRNA
GC content 0.49
exon number 16
gene id tnnt2e
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 18145872 ~ 18156560 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCACACAGGTCTGTATTAGGTGAGTGGCGTTAGAGTTTGCTGGATATTGTGTCCTGGACCCTTGAGAATAAGATCCTCTCTGTCCTTGTGGACGTCTCAGGAACTGTGTAGCCATGTCTGATACAGAGGaagtggtggaggaggaagtgcAGGAAGAAGTTGAGGAGGAAATCATTGAAGAAGTGCCTCCCCCTGAAGTGGAAGCACCTTCACAAGAAGATGAAGAAACAGAAGCTGAAGTAGAAGATGAGACGAAGCCAAAGCCAAAgaTGTTCATGCAAAATATTACAGCTCCAAAGATTccagagggagagaaagtggATTTTGATGACATTCACAGGAAGCGTCAGGAAAAGGATTTGGCAGAACTGCAGTCCCTGATTGAGGCTCACTTCATCCAGAGGAAAAAGGATGAGGAGGAGCTCATTGCTCTGGTCAACAGGATTGATAAGCGCCGTACTGAGAGAGCGGAACAACACAGGATCCgggcagagaaagaaaaggaaagacagGCCCGTCTGGCGgaggagaaggaaagaagagagcAGGAAGAACAGAGGAAGAAGCAGGATGAGGACgccaagaagaagaaggctCTCACCAACAAGACGCACCAGTATGGTGGAATACAGCAGAAGATGGAGGGTCGTAAAGGGGCAAAGAAACAGACTgagagggagaagaagagaaagatcCTGGCTGAAAGGAGGAAGCCACTCAACATTGACCATCTGTCTGAGGATAAATTGAAAGAGAAGGCCAACGAGCTGTGGCAGTGGATGATGGAGCTGGAGGCGGAGAAGTTCGACCTCAGTGAGAAACTTAAGAGACAGAAATATGATATGACTCTTCTCCAGGCCCGAATCAATGAACAGCAAAAGTTTGCCAAAGGTCGTGGCAAGGGCAAGATGGGTGGCAGGCTGAGGTAAACACCCCAGCACTTGAAGTGCACCAGGAATCCAGAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU337057 lncRNA downstream 53438 18092217 ~ 18092539 (-) True trnaa-ugc_14
TU337055 lncRNA downstream 57035 18088654 ~ 18088942 (-) True G284520
TU337033 lncRNA downstream 116062 18027734 ~ 18029915 (-) False ahcyl2b
TU336874 lncRNA downstream 244710 17901025 ~ 17901267 (-) True G284352
TU336869 lncRNA downstream 247747 17895335 ~ 17898230 (-) True G284349
TU337106 lncRNA upstream 23819 18180379 ~ 18184992 (-) True G284559
TU337140 lncRNA upstream 189893 18346453 ~ 18346836 (-) True G284590
TU337354 lncRNA upstream 542361 18698921 ~ 18747804 (-) False LOC113532190
TU337444 lncRNA upstream 663382 18819942 ~ 18823200 (-) True G284862
TU337448 lncRNA upstream 674365 18830925 ~ 18831139 (-) True G284866
XM_026923382.2 mRNA downstream 4203 18137795 ~ 18141774 (-) True arl1
XM_034313059.1 mRNA downstream 39531 18097627 ~ 18106446 (-) False slc5a8
XM_026923816.2 mRNA downstream 39531 18097627 ~ 18106446 (-) False slc5a8
XM_026923815.2 mRNA downstream 39531 18097627 ~ 18106446 (-) True slc5a8
XM_034313388.1 mRNA downstream 63616 18068598 ~ 18082361 (-) True tmem209
XM_026923661.2 mRNA upstream 264 18156824 ~ 18211704 (-) False cald1a
XM_026923664.2 mRNA upstream 264 18156824 ~ 18187998 (-) False cald1a
XM_026923662.2 mRNA upstream 264 18156824 ~ 18187998 (-) False cald1a
XM_026923660.2 mRNA upstream 264 18156824 ~ 18187998 (-) False cald1a
XM_026923734.2 mRNA upstream 68940 18225500 ~ 18233739 (-) False tnni4a
trnaa-ugc_14 other downstream 53433 18092473 ~ 18092544 (-) False trnaa-ugc_14
trnaa-ugc_13 other downstream 55355 18090551 ~ 18090622 (-) True trnaa-ugc_13
trnaa-ugc_11 other downstream 62123 18083783 ~ 18083854 (-) True trnaa-ugc_11
trnaa-ugc_10 other downstream 62668 18083238 ~ 18083309 (-) True trnaa-ugc_10
XR_004580005.1 other downstream 63616 18070747 ~ 18082361 (-) False tmem209
XR_003403330.2 other upstream 264 18156824 ~ 18187998 (-) True cald1a
trnae-cuc_38 other upstream 55762 18212322 ~ 18212393 (-) True trnae-cuc_38
TU338301 other upstream 2156507 20313067 ~ 20320050 (-) True G285607
trnaa-ugc_16 other upstream 2265841 20422401 ~ 20422472 (-) True trnaa-ugc_16
XR_004579970.1 other upstream 3304266 21460826 ~ 21471100 (-) False LOC113544587

Expression Profile