RNA id: XM_026923401.2


Basic Information

Item Value
RNA id XM_026923401.2
length 2368
RNA type mRNA
GC content 0.45
exon number 7
gene id mpped1
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 7643447 ~ 7690136 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttttttttttggaaagtcaGCTGTTTCAGCCGTCTTCAGCCCTTCAGGATCCAGGTGTGTGTACCTCTCAGTCGAGCTGGATCTCTTGGCATCATGATGGTTCACAGTGCCAGCACGGGGGCTACTGAACACTGAGCCTCATCTGCTTCTCATCTCAGTTCACCAGTGCAAGTGATCTCAGCTCCACTCACACTCAGCCAGCCAGCACGGAGTcgctctgagtgtgtgtgtgtgcgtgtgtgtgtttgtgtgtgtgtgtgtgtttgctggcATGGCATTTACATTGTCGGAGATCATGGCTGCACGAAGGCAGCAGCAGTCTCAAAGAGGAGCGAGAGGAGCAGTGGAAGTAGACGAGTACAGTGCAAACCCCACTCAGGCCTTCACCTTCTACAACATTAACCAGGGACGCTTCCAGCCACCCCACGTCCATATggTTGATCCATTACCCCATGACACCCCTAAGCCACCAGGCTACACTCGCTTTGTGTGTATCTCGGACACACACTCGCGCACGGACTCTATTCAGATGCCGTACGGCGATGTGTTACTGCACGCAGGAGACTTCACTGAGCTTGGCTTGCCCAGCGAAGTCAAGAAATTCAACAACTGGCTCGGCACCCTACCTTACGAGATAAAGATTGTGATAGCAGGAAACCACGAGCTGACTTTCGATCAGGAGTTCATGGCCGATCTGATCAAGCAGGACTTCTATTACTTTCCCTCCGCCTCCAAGCTGAAGCCTGAGAACTATGAGAACGTGCAGTCGCTGCTCACCAACTGCATCTACCTGCAGGACTCTGATGTTACCGTCAGAGGTTTCCGCATCTACGGTTCACCATGGCAGCCGTGGTACTACGGCTGGGGTTTTAATCTTCCACGAGGGCAAGCACTGCTGGACAAGTGGAACCAGATCCCCGACTCCACTGACATCCTGCTCACACACTGCCCTCCTCTGGgTTTTTTAGACTGGGTGCCGAGGAAAATGCAGCGTGTTGGCTGCATGGAGCTGCTGAACACAGTGCAGAGAAGAGTCCAACCCAAATTACACGTCTTTGGACACATACATGAAGgtTATGGCATGATGACCGATGGAACCACTACGTTTGTTAATGCCTCTGCCTGCACAGTCAACTTCCAACCCATGAACCCGCCCATCGTCTTTGATCTGCCCAATCCCAGGAGCTCGTGATTGAACTTGGCCCCGCCTCACGCCTCCCAAAATCAGGGTTAATTTTTAAGTGTATTTGGGTGCTGTTTTGTGTACatattacagagagagagagagagagagagactactCTGGAAGATTTGAATCTGTTGTTGTGCCATGTTCTGTTCTCGAATCCTGACTTTGCTACTGCCTCATTTTCCGAGTGATTCTCACGCTTTCATTGCACTTGAAATGTTGTGACAATCCCTCTTGTCTGTTAATGGTGGACACACACTGGAACAACCATCATATGGACTACGTGAGACACAAAACTCTGGAAGCCCATAAGAATGTCTGAGCTTTTAATTACTTCACACCGGAGAAGGTTTAAAAGGCCCGTGTGCTGATTGGATGTAATCTGACGTGATCTGATCTGATGGACGTGTCCATTTCCAGCCTTGTTGTTCCCGCTCGAGTTCTTCAGTGCTGTACAGAGAGGACCTCTCATCAGGGTTTGGACTCCAAATCAGACACTGAAAATATAATGTACAGTTGCTGTTGTACAAGAAATTCTCCATTTTTATGCTTCcgttatttgttttattgtaaaacgTGTGATGTGAGTGAGTCTGTAACACACTGTccttaattaaatcattttaaagaatcTTTAACCATGACATTTCTTTCAAAGTGCTGATTAGAAGTCATTaagatattttaatttacattttttaagtgCTTCTCATCTGAAAATGCTCAAAGTGCACTTTTTGCCTATCAAGTATATGTTACTCTACATGTTCGCACCTATAATTTTTCTAACGTTCCTCCTAGCAGTTGTTCATTTTCATGTGTTTGGCTGGTCTGATTATGGTTATTGTTATattcataattaaataaagtggtcttttgttttgtcttttttttacgTGGATGAATAAGTGTATGAATCAGATGAGCATGTGTGAGAGAGCATCAAGTCAAAAAAGCTCTTCTAATGGCCAGAAAGGAAAATGTAGGACTCTAGattgaagaaagaaaatgacagagaACAGCATTTGGATGATTATATAAAGGCTTGGAGTCTGAATTGGTGTGCCATATTGGTTTTttttaccacagtgctgttgaattcttgaatctgattggtcgtttctatagtaacaacttacacagggacttgtatgatggacgttctacataaatgaatg

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579997.1 lncRNA downstream 109165 7530784 ~ 7534282 (-) False LOC117599592
XR_004579998.1 lncRNA downstream 109166 7530784 ~ 7534281 (-) False LOC117599592
XR_004579996.1 lncRNA downstream 109166 7530784 ~ 7534281 (-) True LOC117599592
TU329920 lncRNA downstream 147184 7495572 ~ 7496263 (-) True G278312
TU329881 lncRNA downstream 217532 7424842 ~ 7425915 (-) False camk1da
TU330151 lncRNA upstream 106699 7796835 ~ 7879017 (-) True G278520
TU330235 lncRNA upstream 276683 7966819 ~ 7967421 (-) False avpr1ab
TU330636 lncRNA upstream 526877 8217013 ~ 8217293 (-) True G278911
TU330657 lncRNA upstream 548838 8238974 ~ 8239676 (-) True G278920
TU330707 lncRNA upstream 699362 8389498 ~ 8390559 (-) True G278963
XM_034313356.1 mRNA downstream 51407 7560149 ~ 7592040 (-) True pnpla3
XM_026923327.2 mRNA downstream 51407 7580162 ~ 7592040 (-) False pnpla3
XM_034313355.1 mRNA downstream 51408 7561202 ~ 7592039 (-) False pnpla3
XM_034313354.1 mRNA downstream 65057 7561243 ~ 7578390 (-) False pnpla3
XM_026923325.2 mRNA downstream 65057 7561369 ~ 7578390 (-) False pnpla3
XM_026923004.2 mRNA upstream 10896 7701032 ~ 7786479 (-) True scube1
XM_026923005.2 mRNA upstream 10896 7701032 ~ 7786478 (-) False scube1
XM_026923322.2 mRNA upstream 136153 7826289 ~ 7830138 (-) True c18h12orf45
XM_026923000.2 mRNA upstream 181608 7871744 ~ 7924698 (-) True chst11
XM_026922999.2 mRNA upstream 181608 7871744 ~ 7924593 (-) False chst11
trnal-aag_11 other downstream 49639 7593727 ~ 7593808 (-) True trnal-aag_11
trnam-cau_46 other downstream 1540300 6103076 ~ 6103147 (-) True trnam-cau_46
XR_003403345.2 other downstream 1610254 6033029 ~ 6033193 (-) True LOC113532437
TU329048 other downstream 1651513 5981138 ~ 5991934 (-) False copg2
TU329042 other downstream 1658883 5982292 ~ 5984564 (-) True G277575
TU330291 other upstream 362952 8053088 ~ 8068077 (-) True G278634
TU330637 other upstream 528425 8218561 ~ 8219680 (-) True G278912
XR_003403340.2 other upstream 1119084 8809220 ~ 8809338 (-) True LOC113532431
TU331209 other upstream 1517215 9207351 ~ 9208563 (-) True G279415
trnay-gua_2 other upstream 1932397 9622533 ~ 9622619 (-) True trnay-gua_2

Expression Profile