RNA id: XM_026923421.2


Basic Information

Item Value
RNA id XM_026923421.2
length 5982
RNA type mRNA
GC content 0.49
exon number 27
gene id ptpro
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 11865792 ~ 11925507 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATAAAGCGCTCAGTCTCATTCAGGCTCTGTGCCTGGGTTACTCTCTTCTCTCTGAGCACAATGGTCAATCCCTGCGTCTCACCGACGTGCCACTGTCaataaactaaagaaaaaaccCTCGTCCGGCTCTTAAACTAGCACATGGCTGGAACAGGAGCTTTGTGACAGGGCTGGAAGTCGGGGAAGAGCTGTAGCCGTGTGGAGAACAGTGCTCTTGTGTAGGGTCGCGGCGCGCCAGGCGCCCTGATGCTGCGAGGAAAAAAAACGCCATTGTCCAACAAAAAAGCGCTAGCTAGCTGCTAAATGACTGGCTTACAGACGAGAAACATGACTTCGACGCTGCCTCCCgtccttttcctcctcctcctcagcatCCAGACCGCCGTTTCATTCGAGGTGACGTTACAGGATGACGACTGCATCATGATGACTCTCGAACCCTTGGATCTGAGGGACAACATCACTGCGTATGCTGCCAGGATATCTGGAGAGCCTCGCACCCACATCCTGCCCTTCCAGAGTACCAGCAATGGCCACCTGGctccttctgtccttctttaTAACACCACCTACCATGGGTTCTGTTACACCATCAGCCTTCTACTAGCCAATGGCTCCACGTGGACCAAACCGGTCAAGACTGTGACTCTGCTCACAAAGCCTCTTCCATTGGAGAGTGTGCAGATTTCAGACTACCAGCCAGCTCCGGAGACCGGCGTGGTATTTGAGCTCCGTTCGCCGGAGAGAAACAGCTTTAGCCGGGTGAACATCAGCTACTCCGAGGGCAGAGAGCAGCGCTTCATGCTCTACAAAGATTTTCAGAAAGGCAAAACGGTTTTTAAGCACTGGTTGCCTGGGACGTGCTACAGCAACATCACCTTCCAGCTCATCTCCGAAGCCACGGTCAACAAAAGCACCCTGATAAAAAAGAGTGAAGTGATCCACGAGCCGCTCCATCACAGGACAGTACCCAACCCTCCTCTCAACGTGTCTCTCAAGATTGTCCACCTCAATGGAAGAGGCTTGCCTGTGACTAACTGGCGTGAAAAGGCATCCCATGACACCCGTCTGCCACGAAAGGCACGCGACGTCCCCCTAACAGAGGAACAGCTAGAAACAGAGGTGCAAGACAAAGAGGAAGATCCGAGACCCGAAGAGGAGTCGCAGTCAGTTACCCAAAGACCTCTTGCTACCTCTGAGAACCTAAACAGCAGCTCAGCGCCATTCGTTAACATCGTAAATGTGTACACACCTGCTGCAGAAAATATCTCCACTAACAGCAGCGACATGTCAGAGAGCGAGAATTCCACTGCTTCCTATTGGCCAACGAGGCGTCCCTCTCCCACCGAAGGGGAATATGAGTTTGTGAATGGAGTGGCTCCAGAGTATGAAGACTCAAAGGAGCTTGGCTCAGCCATGGATTCCAGCCTAGAGCCCACTGACGGGTCCAACAAAGCGTCCTCGATTCTGCTGGAGCTTCGCTGGTTGCCTCCCCCACCACCCACCACAACTGACGGCTTTAATGTCTACATCTATCGAGACAGTAACATGAATAAACCGGCGACTGTGGACGAGAACACTCATGAGTTCTTCACCGAGCTGTCGGAGCCTGGGACATACCGTGTTCTAGTCACCACCATCAgctcctcaggagagtgtgagcCCCGAGAGAGCGCACCACATCGAGGATTCACCTTCTACCTCAGTCCTACAGGCGAGTGGCTGGAGCAGCCCAAGGAGCGTCCCCAGGCGGTGAGTGTGAAAATGCTGGGGAAGAGCACAGCCTCTGTGTCCTGGGCTCCACCCAAGCAGAGCTACAACGGCAGCCTCATCTCAGTGGTATCTCTAACGTGCCTCAAGCCCAGCCTCAGCCAGCGCATGGAGAACACCTACTGCTCTGAGGAAAACACCACCATTGACGTCATCACTAACCTGACTCCTGGTGCTCAGTACAGAGTGGTGGTTTATCACACCAACGGACCCCTAATCAGCCCTCCCTCCGAACCAGTCATTATCGATATAGAGCCAACAGGAGTGCGAGACCTGGTGGTGTACCCCCTGAGTCCCACGGCAGTCATTCTGAGCTGGCAGAGGCCACACAACGTGGCCTTCCGCAAATACGTGCTGCAGACCTTTTACTTCAACTCGGCCACGCAGACCGCCCAGTGGACCACGTACTACGAGATTGCCGCTACCGCCTCCGTCATCGCCTCTGTGAGAGTGGCAGATCTTTTGCCTGCATGGTACTACAACTTCAGAGTGACCATGGTGACCTGGGGTGACCCTCCTCTCAGCTGCTGTGATGGATCCACTGTGAGCTTTGTTACTGCTCCTGAGGCACCCCACATCTCCTCAGTGGATTACTCCCATGGTGTGTTGTATGTGCGCTGGACCTACGGGGATCTCTTCACTGATCTGTCCCACTCCAGAATGCTGCACTGGCAGGTGCTGGCTGAAGGAAAGAAAGGCTCCAGGAGACGCTTCTCAACAGATGTGACACGCAACGTAATGAAGGCCGCGCTTGTGCTCCCTCCTGGTGACATCTACAACCTGACGGTCACGGCTTGTACAGAACGCAGCCGCAACACCTCCATACCCCACATCCTGAAACTGGATCCAGCACCTCCCAAGTCCCTGTACGCGGTCAACGCTACACACTCTGCCGTCACTTTGCTCTGGACTGAGGAGGGAGTAGTGGACTTTTACCAGGTCAGCTGCAGGCAACTCGGGCCCATCACACAACTCAAGGCTGCTGAGCCCCAGACTGCCCACTCCCATGTGTTAACTGTGAACAACCTGCAGGCCTCCACCTCCTACAACTGCAGCGTGATCAGTTACAGCTACAGCACACCCAGCGAGCCCGCCTACATTACCATCAGCACTCTGGctcaggAGATGAACCCCAGCATAGCTGCTATCTCAGCGCTGGCTGTGCTCAGTGTGTTACTCATCAGCCTGCTTGTGCTCTTTCTACTGGTGCTGCgcaaaaaacacatgcaaatgacCAGggAATGTGGGGCAGAAACCTTCGTCAACTTCGCCTCTTTTGAGCGTGATGGGAAACTTCCTTACAACTGGCGAAGGAGCCTCTTTGCCTTCCTTACTCTTCTGCCATCCTGCCTTTGGACTGACTATCTTTTGGCTTTTTATATTAATCCATGGAGCAAGACTGCTCTAAAGAAAAGGAAGCTAACAAGCCCAGTGCAGCTGGATGACTTTGAGGCCTACATAAAAGACATGGGCAAAGACTCTGCGTACAAGTTCTCCCTGCAGTTTGAAGAGCTGAAGAGTGTTGGTCTGGACCTATCCCATGATGCCGCAGATCTGCCAGTAAACAGACCCAAGAACCGCTACACCAACATCTTACCCTaCGACTTCAGCCGCGTAAAGCTAATCTCTATGCACAACGACGAAGGCTCCGACTACATCAATGCTAACTACATTCCAGGCTACAAGTCACCTCGTGAGTACATCGCCACACAGGGGCCACTCCCGGAGACGCGCAACGATTTCTGGAAGATGGTGATGCAGCAAAACTCGCACGTCATCGTCATGCTGACTCAGTGCAACGAGCGGCGCAGGGTGAAGTGTGATCATTACTGGCCATTTACGGACGAGCCTGTTTCCTACGGCGAGATCACGGTAGAGATGCTGTCTGAAAGCGAGTCTCCTGAATGGACCATCAGGAATTTCCGCCTCAGCTATGCAGACGAGGTGCAGGACGTGCTGCATTTTAACTACACGTCCTGGCCCGATCACGGTGTGCCCACGGTGAACGCCATCGAAAGCATCCTGCAGTTTGTGCAGCTAGTGCGCCAGCAGGTGAACAGGACCAAAGGACCAGTTACGGTCCACTGCAGTGCTGGTGTGGGTCGTACAGGCACGTTTATTGCCCTGGACCGGCTGATGCAGCATATCCGGGAGCACGAGTATGCTGATATATTGGGCATGGTATCAGAGATGCGCTCACATCGACTCTCTATGGTGCAAACAGagGAACAGTATGTCTTCATTCATCAGTGTGTTCTGCTCAtgtggaagaagaaaaaacagcagAGTCTCACCAGCGATGTCATCTACGAGAACGTCACCAAGTCTTAATGGCAGCCAGGACATGTATGGAAAGCTGTATTGATGCCCTGCACTCTCCTTTGCTTCAGGCATTTATTCTCTGCATAAAGGCCTACTATATAAAcaccagaataaataaaaactgcagcaGAGGAGTTGCAGAAACCACCCAAGCTATTCTACATTCTATTGTCCCAACCAGTGAAGGCACAATAGGACAAAAAACATGCCTTAAGGAATCCACAACAACGTCCAGGCTGCTTTCTTTCAGCAGAGTCACTGCAGCAGTTCCAGAGCGAGTGTTAGTGGTGAGAGTGAATGAACCGCTGGCCAAATGGGACAAAAAAGAACTTTTAGCATTTAGTTTTATTCTCAGGATTGTCTGCAAGCACCAACCCCATCTGCTGGTTGCTGCCACACCCAGCGAAGGCATGAGGAGGTCCACGTGCTCGTCATGGACGTCTCTGAGGGCGTTAGGGCGCCATAATTTGTGAGAGTATTTCACATACATCCAAACTCATCATAGTATTAGTATTCATTGCCTTGGTTCCTGAAGCTGCATCAGACTCTTTAACTGTCACACTGCCACTCCCTGGAAGGGACATTCAGtacaagtgtgtatgtgtgtgtgtgtgtgtatgtgtgagagagagcattCTCTACTGCTGTACTACTCTTGATAAGCTACTCTTTGGTACGACTACTAGAACCTGGTTGCATATTCCCACATTCGTGAAATGAGGACCTTCTGAGGTGACGACATGCATCGGTCTTTCTGGGTCTGTATAATTTGCACTGATTATCTGTAAGTGTGCGCTGCGCTATAGCGAAAATATGTAAGTTATGTCACTGTACTGCGCCTCCTCGTCTGTCCTCACCACGTCTCCTGCTAGCTGAATGATATCATCGGTTCTACAGTAGAAGAACCTTATCTAAGCAGAGGAGAGTGTGGTGCAGTGGAAATTGCCATGTCAGAGCTCTCATAACTCTGATGTGGAACTGCACAGTTTAATCTTTCAAGCTGTGGAGTTGGAATGTACACATCATCCTTTCATGTATAAGGAAGCCTGGCTGATGCCAAGACTTAAAtgttctcacaaaaaaaaaaaaaactgaagattTGTTTCGAGTTCAGCTCACTTGGGTCCAAAACCAGAGTGTGAAACATATCCTGTCATGTAGAGATATGTAggatgtaatgtttattttttaatgtttatttttacagcaaaGCTGGTGAAGCTGGTGAGTTCATCTGTAAAGGACCATGTTTATGCTTACATGTGGAAAAAGCAGTATTGGCATCTGTATTGGCAGATAATGAGGAATTATGTATTCATTTCATATCACATGTTGAAAAATGTCTGCTCAACTGGTACTGGCAGTGCACACTGAAGTTCATAACAGCAAGAAATACCTTAGATATCTCCCATAATAAGGTACAGTATAAGGTCATTCTGAATTAATATTTGGCTTAGTTTGTACATACAAAGCCTTAAAGAAGTCTCTTACTTCATACTAAAGAAAAATGGATCAAATCCATGATTAAAGTCTTCATATTTaactatttctatttctaaaaatgttacatactgCCTATTGTGCTGAGTAATATTCTCATAATAGTATGCCGAGAATTTCACTGATCAATTATCCAGTCCGCTACAAAACTATACATGGAGTTGGAGAAGACCTTCAAATATAAGGGCCAGTGTTTGCTCTTAAAGTTTCacgtctttttttaaaaaaaaatttctttaataTAGTGTACGTCGAGCTGTGTCCAATTTGTCTTTGGTGCCATTTTGTGCAATGCATCACTTTAAGCCTGAGCTGAGATCACTCGTCATCCTCTCAGTTTTAATGTGTGTGGTTATtggaaacaaaacaataaagaaaaccGTTGAATA

Function

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K18035 PTPRO; receptor-type tyrosine-protein phosphatase O

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333155 lncRNA downstream 112900 11739730 ~ 11752892 (-) False dusp16
TU333143 lncRNA downstream 154808 11707690 ~ 11710984 (-) True G281102
TU333109 lncRNA downstream 276105 11589003 ~ 11589687 (-) True G281075
TU333104 lncRNA downstream 282155 11583393 ~ 11583637 (-) True G281070
TU333091 lncRNA downstream 303728 11561725 ~ 11562064 (-) True G281057
TU333441 lncRNA upstream 107590 12033096 ~ 12036362 (-) True G281362
TU333459 lncRNA upstream 168351 12093857 ~ 12094059 (-) True G281373
TU333565 lncRNA upstream 325808 12251314 ~ 12254155 (-) True G281455
TU333597 lncRNA upstream 443453 12368959 ~ 12369265 (-) True G281486
TU333624 lncRNA upstream 532057 12457563 ~ 12459092 (-) True G281510
XM_026923205.2 mRNA downstream 69867 11773891 ~ 11795925 (-) False tbk1
XM_026923206.2 mRNA downstream 70378 11773891 ~ 11795414 (-) True tbk1
XM_026923546.2 mRNA downstream 96873 11760781 ~ 11768919 (-) False gpr19
XM_026923545.2 mRNA downstream 96874 11760781 ~ 11768918 (-) True gpr19
XM_034313339.1 mRNA downstream 99383 11760781 ~ 11766409 (-) False gpr19
XM_026922786.2 mRNA upstream 63638 11989144 ~ 12081771 (-) True syn3
XM_026923692.2 mRNA upstream 157620 12083126 ~ 12093099 (-) True LOC113532343
XM_026923739.2 mRNA upstream 172015 12097521 ~ 12108662 (-) False LOC113532368
XM_026923738.2 mRNA upstream 172015 12097521 ~ 12108662 (-) True LOC113532368
XM_034313357.1 mRNA upstream 184737 12110243 ~ 12122771 (-) True LOC113532307
TU333129 other downstream 205465 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 277768 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 606400 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 858649 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332243 other downstream 1569671 10269757 ~ 10296121 (-) False LOC113532274
XR_003403346.2 other upstream 655417 12580923 ~ 12581063 (-) True LOC113532438
TU335292 other upstream 3248842 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 5033018 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 5178059 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 6053279 17978785 ~ 17980246 (-) False LOC113532261

Expression Profile