RNA id: XM_026923473.2


Basic Information

Item Value
RNA id XM_026923473.2
length 2234
RNA type mRNA
GC content 0.48
exon number 9
gene id depdc4
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 13304454 ~ 13310263 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTTCTCAGACCAGCGTTTCACAGCCTTCTGTCTTTTTGCCCGGGTCCACGTACCCACtacgtcacttcctgtttgacgATGATGGCGGTCGATTTGACTCCGAGGTTTAGAAGGCTGAATAGTCAAACGAGATGTTTTAACGAAAAGAAACATCCAACAGGACCGTTTAGAGCGACACAGCTGTGGCGTAACATCATAGAGGCCTTACAGACGCAGGTGGAGGTCAGGCGTCGTCGGCAGCACTTGCGAGTACACAGAGACTGCTTCACTGGCTCTGATGCTGTTGATGTGGTTCTCAGCCACCTCATGCAGAACATCTATTTCTGCACCAGTGACGTGACCCGCCTCAAAGCTGTCAGGCTTTGCCAGGCCCTCATGGATGCCCGAGTGTTCGAACCTGTTGGTGTGAAGCTCTTTCGCAGGGAAAAAGAGCTGGTCTTTGAGGACTCTGGCTGTAGTCTGTATCACTTTCTGGATTCTGAAGGCCTTCCTGGATCAGCCAAGTGCACTGGTGATATGGAGAATGAAACACCcatgaaagaaaatggaaagaagaagaaagggtcCAGGTTTGATGACTTAAAGACCATCTCCAACCCCTTGGCCCTGGGATCCTCAGACAGAAGGGTGGAGAGAATACTGAAAACCATTAACCTCCAGCCGTCGATGCCTTCTGGCCTGAATCGTGTTGGTTTATCTACTACCTACCTCTCAAAGCAAGTGGTACAGGAAGTGTGGAAACAACAAACCCTTCTCCAGCTGTTGCAGTTAGTGGAGGTGGCTGTGTTGGACTGCGTCCTGACATCACCCTCAAAACCTGCTCCTCTTCGCATGCGTTTGCTGAAGAACCATGACCTGGTCATCTCCAACACCTGTGTGGACCGAGAGGTGTCCCAGGTCCTCAACCTGCCAGAACTGGACTCGTGGCTGATGGCGGCTGCAGACTGTCTGGAGCTGTTTCCAGATGAGGTGATAGTGGCGACGGGAGAGCAGCTGCTTCAGGTCCATGCTGCGGACGGTGACGAGAAGCTGGGCGCCTACAAGAAACTATTATTCGACACAATAGCAAAGTACTACAACAATCAGGAGAGAGTTCCCCTGCTGGCTGGACGCTACATGGACATCCATACAGGCATCCTTAAGCTACTGGactcaGGTAGGGCTGAGGATGCTCTAAAGGCATCTCAGCTGTGTCTGCGACTTCTGGACGCCAGCTCCAGAAACGAGCTGCGCAGACTCCTGGCCTTCATGGCTGAAGCTGCAGACCCCAAGGCCTTCCAGCTTCACAAAACGATGGAGAACAGGGCCCTGATCAGCAGGACGTTCATGAAGGCTGTGCTTCAGAGTAAAGATATGTCTCGTGCCCAGTGTGAGCAGCTCCTGCTGTTTCTCATGGACCACCATTTACATCTGTTCAAGACACCGGTGTCTCTCACCGAGGCGGTGACGAAGGCCCTGCAAACCTTGCAGCAAGGGCGCGATCTGGATAATGTAGCACTGTTCACGTTCTGTCAGCAGATGTCGACACAGCAGTTTGAGGAACAGCGAGAGAAGAGCACATTCGAGAGCCTCAAACAGCTCATTGTACATATTACGCTTAGTAatgagctgtcaatcaaacagaGGAGGAAGCTCATTAAGGAGTTTCAGAAGCACCACCCAGCAGTGTTTCTCCACCATTTCTCCTCCACCTTTTAGAACATGCTGCATAGTTTCTCCAAGGAAGGCTCTTTTCATTTACTTGGTAGAAACATAGCCATAAGATGTTTATGctttaaacagaaacagatcTATTTTTAGTATGTAAACGTAATTCAGTAGTATAACACTGGCAAATTGTGCCTAAGTATTTGTCCTCCAGCTGCACCGCACACATTGAGTTCTGACAGCGAATAGATATCGCAGAACTACACCTAACTAGATCTCTTAAACAAATCATTCTTAAAACCCGGAACCTTTTACAGTGACGCTGATCTTTGGCAGGTTATCACCTGCTCCAATGGTCACAAAAGGTAATCTGCCCCAATTATGATCGAGAAGATATGGTCCTAAATGTTGCAATACTATTTTTAGATGCCAGCTGTACTAGAAGCAGACTCCTGCAGTTCTTTTTCAGCTCAGAAGaagtacagggtgtcccaaaagtctccatatataggggaaattaacactttctagcaaaatgtcttccaaaatttttcatagttagtttattttatatatattttttctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU334201 lncRNA downstream 18736 13259152 ~ 13285718 (-) True G281981
TU334183 lncRNA downstream 93961 13168675 ~ 13210493 (-) True G281964
XR_003403338.2 lncRNA downstream 157096 13146282 ~ 13147358 (-) True LOC113532391
TU333645 lncRNA downstream 826825 12476264 ~ 12477629 (-) True G281527
TU333624 lncRNA downstream 845362 12457563 ~ 12459092 (-) True G281510
TU334236 lncRNA upstream 9910 13320173 ~ 13373048 (-) False G282006
TU334237 lncRNA upstream 9910 13320173 ~ 13321414 (-) True G282006
TU334285 lncRNA upstream 97350 13407613 ~ 13409326 (-) True G282047
TU334298 lncRNA upstream 117394 13427657 ~ 13427872 (-) True G282060
TU334376 lncRNA upstream 248996 13559259 ~ 13563946 (-) True G282116
XM_034313190.1 mRNA downstream 175 13276926 ~ 13304279 (-) False scyl2
XM_026923049.2 mRNA downstream 1947 13276926 ~ 13302507 (-) True scyl2
XM_026923050.2 mRNA downstream 1949 13276926 ~ 13302505 (-) False scyl2
XM_026922632.2 mRNA downstream 105529 13188862 ~ 13198925 (-) True tnni1d
XM_026922677.2 mRNA downstream 194240 12962716 ~ 13110214 (-) True LOC113531778
XM_026922690.2 mRNA upstream 15138 13325401 ~ 13338373 (-) True metap2a
XM_034313097.1 mRNA upstream 34481 13344744 ~ 13374285 (-) False vezt
XM_026923174.2 mRNA upstream 34481 13344744 ~ 13364503 (-) False vezt
XM_026923173.2 mRNA upstream 34481 13344744 ~ 13364503 (-) True vezt
XM_026923198.2 mRNA upstream 155939 13466202 ~ 13501821 (-) True lamb1b
XR_003403346.2 other downstream 723391 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 1644127 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 1716430 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 2045062 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 2297311 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU335292 other upstream 1864085 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 3648261 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 3793302 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 4668522 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 4668522 17978785 ~ 17980246 (-) False LOC113532261

Expression Profile