RNA id: TCONS_00000660


Basic Information

Item Value
RNA id TCONS_00000660
length 2532
RNA type mRNA
GC content 0.48
exon number 6
gene id XLOC_000387
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 32521469 ~ 32693950 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCACGGCTCAGAGGAACCCCATGGATACCACTTACCATGGTTCATCCGCTGGCTACTCTACGCCTTTTTACCTGGATTGTGCTTGCGGCTGCGTGGCTGGCCATTACATGGGCTCAGCAGCACCCTATTGTTACGACAAACTATGGCAAGCTAAGAGGCTTGAAAACACCTCTGCCCAATGAGATTCTAGGGCCCGTGGAACAGTATTTGGGGATCCCCTATGCCCTGCCGCCCACAGGAGAAAGAAGGTTTCAGCCCCCAGAGCCTCCAATGTCCTGGCCAGGGATTCGAAATGCTACACAGTTTGCTCCTGTTTGTCCTCAGTTTCTGGAAGATCGTTTTTTACTCAATGATATGTTACCCGTGTGGTTCACCGCCAACTTGGATACTGTTGTAACCTACGTACAAGATCAAAGTGAAGACTGCctgtacttaaacatttatgTTCCTACAGAAGACGGAGCCAACAAAGGCGATGATTTCACCAATAATGAGGGTGGCGAAAATAAAGACATCCATGATGAGAATGGACTGAGACCTGTTATGGTGTACATCCATGGTGGATCCTACATGGAAGGAACAGGGAATATGATTGACGGCAGTATTCTAGCCAGCTATGGAAACGTCATTGTAGTGACCCTGAACTATAGGCTGGGAGTGCTGGGGTTCCTGAGTACAGGTGACCAGGCAGCCAAAGGGAATTATGGGCTGTTGGACCAGATCCAAGCACTGCGGTGGATCAAAGAGAATATCCAGGCTTTCAAAGGCGACCCGAAAAGGGTGACTATATTTGGATCAGGAGCTGGGGCGTCCTGTGTTAGCTTGCTGACCCTATCACACTATTCAGAAGATTTGTTTCAGAAAGCCATCATCCAGAGTGGGACTGCTCTGTCTAGCTGGGCCGTCAACTACCAGCCTGCCAAATACACCCGGATACTAGCTGAGAAAGTGGGCTGTAATATGCTAGATAGCATAGACCTGGTggaatgtctacagaacaagaaCTACAAGGAGCTGATTGAACAGTACATAACACAAGCCAAGTACCACATTGCGTTTGGTCCAGTAATTGACGGTGACGTCATCCCAGATGACCCCCAAATTCTGATGGAGCAAGGGGAGTTCCTCAACTATGACATCATGCTGGGTGTTAACCAGGGTGAGGGTTTTAAGTTTGTGGATGGCATCGTGGACAGTGAGGATGGTGTGTCTGCAAATGACTTTGACTTCGCCGTGTCTGATTTTGTGGACCATCTTTATGGTTATCCAGAGGGCAAGGACACGCTTCGAGAAACCATCAAGTTCATGTATACTGACTGGGCTGACAAGGAGAACCCGGAGACCAGGCGAAAGACTCTAGTTGCACTTTTCACTGATCACCAATGGGTGGCGCCAGCAGTAGCTACAGCAGACCTTCATGCTCAATATGGATCTCCaacatatttttatgctttttaccATCATTGTCAGAGTGAAATGAAACCTAGCTGGTCGGATTCAGCACACGGAGACGAGGTGCCTTATGTGTTTGGAATTCCCATGCTTGGCCCCACTGATCTCTTTAATTGTAATTTCTCCAAGAATGATGTCATGCTTTCGGCGGTGGTGATGACGTACTGGACAAATTTCGCTAAAACTGGGGATCCGAACCAGCCAGTTCCACAGGACACCAAATTCATACACACAAAGCCCAACCGCTTTGAGGAAGTAGCCTGGTCGAAATACAACCCCAAAGACCAGCTTTACTTACACATCGGACTGAAGCCAAGGGTGAGAGATCACTATCGCGCCACCAAGGTTGCTTTCTGGTTAGAACTGGTACCTCATCTCCATAACATCAACGAACTCTTTCAGTATGTCTCGACCACTACAAAGATACCTCCTCAGGATACTACACCTTTCCCATACACTAAACGACTAGGTAAAACATGGCCATCCACCACACGACACCCTGGTGTTCCTCCTGCCAACACCAAACAAACCACAGACCAGCGTAAAGGCAATGATTTGAGTGATGACTCAGCAGTGGTTATCGAGACAAAGCGCGATTACTCGACCGAACTCAGTGTGACCATAGCAGTAGGTGCTTCTCTCCTTTTCCTCAACATTCTGGCATTCGCAGCGCTCTACTACAAGAAGGATAAACGTCGACATGAATCCAACCGACGAGGACCAAGCCCGCAGCGGAACTCTGCGCCAGCTAATGTGGTGGCTAACGCTAATGACATAGCACATTTGCAGAGTGATGAGCTGATGTCACTTCAGATGAAACAGCAGCAGATGGAACACGAGCACCATCATGAGTGCGATTCTTTACAAGCTCACGATACGCTTCGTCTTACCTGCCCGGCTGATTATACGCTTACCCTGCGACGTTCACCTGATGACATCCCACTCATGACGCCAAGTACCATAACAATGATTCCTAACACTCTGGCCGGAATGCAGACCCTGCACAATTTCAACACATTCGGAGGCAGTCAGAACAGTACCAACTTGCCCCATGGGCATTCCACCACCAGGGtatag

Function

GO:

id name namespace
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0097104 postsynaptic membrane assembly biological_process
GO:0097105 presynaptic membrane assembly biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0007158 neuron cell-cell adhesion biological_process
GO:0045202 synapse cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0042043 neurexin family protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100309-2 Predicted to enable neurexin family protein binding activity and signaling receptor activity. Predicted to be involved in several processes, including neuron cell-cell adhesion; synapse assembly; and synaptic vesicle endocytosis. Predicted to act upstream of or within cell adhesion. Predicted to be located in cell junction and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and synapse. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; eye; gonad; spinal cord interneuron; and swim bladder. Human ortholog(s) of this gene implicated in Asperger syndrome and autistic disorder. Orthologous to several human genes including NLGN4X (neuroligin 4 X-linked).

Ensembl:

ensembl_id ENSDART00000128317

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000651 lncRNA upstream 509982 32017437 ~ 32018115 (+) True XLOC_000383
TCONS_00002849 lncRNA upstream 515719 32011880 ~ 32012378 (+) True XLOC_000381
TCONS_00003083 lncRNA upstream 516303 32010262 ~ 32011794 (+) True XLOC_000380
TCONS_00000637 lncRNA upstream 1007125 31519239 ~ 31520972 (+) True XLOC_000371
TCONS_00002848 lncRNA upstream 1168778 31356349 ~ 31359319 (+) True XLOC_000370
TCONS_00002850 lncRNA downstream 826096 33517802 ~ 33518823 (+) True XLOC_000394
TCONS_00000683 lncRNA downstream 1005635 33697341 ~ 33701916 (+) True XLOC_000399
TCONS_00003084 lncRNA downstream 1539897 34231603 ~ 34234056 (+) False XLOC_000404
TCONS_00002851 lncRNA downstream 1540032 34231738 ~ 34232127 (+) True XLOC_000404
TCONS_00003085 lncRNA downstream 1758953 34450659 ~ 34454447 (+) True XLOC_000408
TCONS_00000655 mRNA upstream 142432 32341484 ~ 32385665 (+) False XLOC_000385
TCONS_00000656 mRNA upstream 185146 32341734 ~ 32342951 (+) True XLOC_000385
TCONS_00000652 mRNA upstream 450624 32051581 ~ 32077473 (+) False XLOC_000384
TCONS_00000654 mRNA upstream 453956 32054159 ~ 32074141 (+) True XLOC_000384
TCONS_00000650 mRNA upstream 513610 32013688 ~ 32014487 (+) True XLOC_000382
TCONS_00000662 mRNA downstream 100214 32791920 ~ 32793644 (+) True XLOC_000389
TCONS_00000665 mRNA downstream 526205 33217911 ~ 33283689 (+) True XLOC_000391
TCONS_00000666 mRNA downstream 630468 33322174 ~ 33324476 (+) False XLOC_000392
TCONS_00000667 mRNA downstream 630849 33322555 ~ 33334732 (+) False XLOC_000392
TCONS_00000668 mRNA downstream 637151 33328857 ~ 33332061 (+) True XLOC_000392
TCONS_00000657 other upstream 13993 32513989 ~ 32514104 (+) True XLOC_000386
TCONS_00000653 other upstream 463067 32051613 ~ 32065030 (+) False XLOC_000384
TCONS_00000645 other upstream 805222 31706669 ~ 31722875 (+) True XLOC_000376
TCONS_00000632 other upstream 1464247 31057240 ~ 31063850 (+) True XLOC_000367
TCONS_00000628 other upstream 1563093 30955925 ~ 30965004 (+) True XLOC_000366
TCONS_00000661 other downstream 14403 32706109 ~ 32706227 (+) True XLOC_000388
TCONS_00000663 other downstream 523535 33215241 ~ 33216718 (+) False XLOC_000390
TCONS_00000664 other downstream 523537 33215243 ~ 33216083 (+) True XLOC_000390
TCONS_00000675 other downstream 710152 33401858 ~ 33455232 (+) True XLOC_000393
TCONS_00000681 other downstream 991525 33683231 ~ 33693904 (+) True XLOC_000398

Expression Profile

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