RNA id: XM_026923489.2


Basic Information

Item Value
RNA id XM_026923489.2
length 3002
RNA type mRNA
GC content 0.42
exon number 8
gene id tspan11
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 9755585 ~ 9854329 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTCCTCCCCGCCCCTCACTGACCCTCCACTCGGACACACTCAGCAAGCAACAAGCtgcactgctcacacacacacacacacacacatcgtgtggaattaaaaaaaaaagagagagaagacatTTTAACACTTGAATCCTCGAGGATTTTCTGCTTCTTGGCAGGAAAGATGGGGAGCATGTATAAGGATGAGCAGGATGACTGGGTGACAGTCTGCCTCAAATACCTTCTCTTTGTCTTCAACTTCCTGTTCTGGATGGGTGGAGGGGTCGTGATGGGGGTGGGGATCTGGACCCTGATTGATAAAGGAGATTACTTGAGCTTGCTGGCCTCCAGCACGTTCGCCGTGTCGGCCTATATCCTCCTGCTGGCTGGTGGCCTGGTCATGGTCACGGGCTTCCTGGGCTGCTGTGCCGTCATCCGCGAGCAGAGGAGCCTCCTTTCTACGTACTTCTCCTGTTTGCTGGTGATATTCCTGATTGAACTTGTTGCTGGAGTTCTAGCATATGTGTATTATCAAAGGTTGAGTGAGGAGCTGAAGCAGCACCTCAGTAAGACAATGATGGAGAACTACGCTCAGCCAGGGAAGGAGGGCATCACTCAGGCCGTGGACCGACTGCAGCAGGACTTTAAGTGCTGTGGAAGCAACAACTCCTACGATTGGCAGCACAGCGTGTATGTCACGTCCCCAGAGGCTGAAAAAAGGGTGGTTCCTGACAGCTGCTGCAAGACCATGACCCATCGCTGTGGCCAGAGAGACCACCCTTCCAACATCTACAAAGTGGAGGGTGGCTGTATTACTAAGCTGGAACAGTTCCTGGCTGACCACCTGCTCATCATCGGCGCTGTGGGGATCGGCGTGGCCTGTCTACAGatctGTGGGATGGTGTTTACTTGTTGCTTGCACAGACGGATAAAGCTCGACCCGTACTGACCGATCAGCAGGAGCTTTACGGGTCGCCTCAACTGCTTGCTGCCAGTCCACACACTTGTTTTTTCattcctccttttcttttcctaaactgcatgaatgtgttctCCCTCCAGTATAGTCTTACATGAATATGtcttatttcttcttttaaccttctattaatatattcattcaatcattaatatatttgtttCCAAGGGTCTTGCCTGTGTAATGTGGGATTCCCAGCAAGAATGTAATGTAGTTATCACTGGTATCCctattacacacaataataatttttataatcttcttcaaaaaagaaaaggcagaaatctatttttttcctctgtgagCACTGTGTATGTTTAACTATATCTATAACCAGTTTAAGCTGCTATCTTTATGCAACTAGATGCTATTTTCTTCTTAAGCTTAACGTACAGAAATCATATAAAGGTCATGTGATGCAGTCAAAGGATGCATCGCATGAACTATGAATAATGTGTGTAGTAGTATATGGTCTACTAACACAACGTACGCTGAGAGCCTTGAAAAAAACTACTGAGAAGCTAAAAATAACACAGGGATTTCTGGACTATAGCATACGCTATATGCACCCTATGGTGCCTTGCATAAGAATTCACCCCACGTaaatttttcctcattttgtagTATTACAGTGTGAACCTGGAATCGACTTAATTGGGATGTTTACCAtttaatttacacaatatgtctaacattcaAAAGTGCAAAATGATCTTTCATTCTGACACAaaggttaatttaaaaaaatattcgtggcaaaattgctcaagctctgtcagaATGGATGGAAATGAATTGTGACCATACATTTTTAATCCTTGCCACAGATTCTGTAtcaggtctgggctttgacacATTCAGGTGGTTCTTGTTGAGCCACTCTAGCGCAGCGTTGGCTGTATGTTTAAGGTTGTTGTACAGTTGGAAGGCGAACCTCTGCCCCACTCTGAAGGTGGGCTCCATCCATCCTGCCTTCAgccctgaccagtttcccaaTCCCTGCACTTGGAACAttatgctaccaccaccatgcttcacagtggcaATGGTATTCTTAGTGGCAATGGAAATTCTGCTAAAGATATGATATTACCCCTATTAAGTTCCTTTCATTTAcaggttgtaacactataaaatggGGAAAAGCTCAGGAGTGGTGCAAATATTGTATTTAACAAGTAGCATTCCTAAGACACATATATATTTGGATACATATTTTACAGATCTTATTTTCACTGGGTGCTCTCTTAACATAACTTGTCTGAAACCTGTTCCATGTTTCTTGTTATCTTTCTAATGTCATGTGCCAGCTGTTTGTCAGCTTCTCTgtcagtatatatatttttattatctcGATTTCAGACATCAGGCTCTTAAACCTGAGTACCGATAACTGATGCATTACAGTGCAAGAGTGAACTTTCCATATCTTTTCAAAGAGGCCTTTAACACACAACTGCCTCTGATACTAGAGCTTCTAGGGCTGCAAAAGATTTCGAGGTTTGGAGGCGCTACATACATGAAACCTTCATGAAGTCTCCATCAATTACTGAAGCAAATATGTAccataaaagacaaaataatattttctaccACTGCTTAATGTGGTAACCATAGCAACCGCCATCTCATTGAAGTTCGGTCTCATTGGAAAAATAATGCAATCTTTGCATTTGATTATCAGCAATTGATGTTTTAAGCTACTATTTTTAATTGGGcttatatatttgaatatgcATATCAGTGCACTTGGGTGGATGGTGCAGCAAATAATGTCTGCATGTCAGATGTCTGACCACGCTTCATTTCACtggtttatcatttatttagctaGATACTACAACACTGTATTGTAAAACAATGATGATATCTGTCCAGTATGTCACATATTTGTTGCCTAGATGCCTTTAGACAAATATGTGCCTCTTTCAAAGGACAGCAGATGTACTTCTTAATGCTGATATAGCAATGGCATGTATTATATATAGGTATGCATACTGATCCttgttactgaaaataaaatgtttttgggaTAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17352 TSPAN11; tetraspanin-11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU331669 lncRNA downstream 19641 9804178 ~ 9804403 (-) True G279832
TU331548 lncRNA downstream 194891 9627337 ~ 9629153 (-) True G279730
TU331545 lncRNA downstream 198925 9624599 ~ 9625119 (-) True G279728
TU331457 lncRNA downstream 290623 9533222 ~ 9533421 (-) True G279641
TU331441 lncRNA downstream 303966 9519833 ~ 9520078 (-) True G279625
TU331737 lncRNA upstream 36304 9890632 ~ 9891233 (-) False cracr2ab
TU331824 lncRNA upstream 93003 9947331 ~ 9947536 (-) True G279967
TU331860 lncRNA upstream 150013 10004341 ~ 10004812 (-) True G280002
TU332117 lncRNA upstream 223758 10078086 ~ 10078356 (-) True G280228
TU332122 lncRNA upstream 233521 10087849 ~ 10088120 (-) True G280233
XM_026923102.2 mRNA downstream 81366 9707450 ~ 9742678 (-) True sema3aa
XM_026922722.2 mRNA downstream 135003 9629331 ~ 9689041 (-) False pcloa
XM_026923841.2 mRNA upstream 24153 9878481 ~ 9892386 (-) False cracr2ab
XM_026923840.2 mRNA upstream 24153 9878481 ~ 9892386 (-) True cracr2ab
XM_026923842.2 mRNA upstream 24153 9878481 ~ 9891073 (-) False cracr2ab
XM_026923843.2 mRNA upstream 24153 9878481 ~ 9890883 (-) False cracr2ab
XM_026923293.2 mRNA upstream 40757 9895085 ~ 9897952 (-) True ccdc59
trnay-gua_2 other downstream 201425 9622533 ~ 9622619 (-) True trnay-gua_2
TU331209 other downstream 615481 9207351 ~ 9208563 (-) True G279415
XR_003403340.2 other downstream 1014706 8809220 ~ 8809338 (-) True LOC113532431
TU330637 other downstream 1604364 8218561 ~ 8219680 (-) True G278912
TU330291 other downstream 1755967 8053088 ~ 8068077 (-) True G278634
TU332243 other upstream 415429 10269757 ~ 10296121 (-) False LOC113532274
XR_004579975.1 other upstream 1140777 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332827 other upstream 1384607 11238935 ~ 11259392 (-) True vegfab
TU333108 other upstream 1731976 11586304 ~ 11588024 (-) True G281074
TU333129 other upstream 1803562 11657890 ~ 11660327 (-) True G281092

Expression Profile