RNA id: XM_026923502.2


Basic Information

Item Value
RNA id XM_026923502.2
length 2460
RNA type mRNA
GC content 0.48
exon number 14
gene id optn
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 7391215 ~ 7403507 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCAGAAGTTTCACAGATTTGTCTTACACATGGCTCGGCTATGCTCCAGCTCTCTCGGTGCGCTTATGGGGCTCCGTGATGGCGTGCAGATCTGCAGGTTTGCGTGAGGCGTGAAGCACTGGACCAGTCGTAAGACGCGAGAAACGTCAACACCCGGAAGCGCAGTGAGAAGTGAGAGAAGCTGGAGTAAACAGAAGTGAATCCTGCGCGTTTGCAGTAAGATGGCCTCGGGTTCCCCCATTCTGAATGGGGATTTGTCTCACCCAACTCAGTCTCAGAGCACTGGAGCACCACATGTAGAGGAGACGCTCCAGCAGATGAACATCCTCATCAAGGAGAACCGGGAGCTCAAAGATACACAAACACTCGAACACCCTGACCTTCCATCTGACTTGTGCACAGAAGCCCTGAAACAGACTAATCTGACAATGAAGGAGAGGTTTGAGGGTCTGTCTGCCTGGAAGGAGAAGcagaaggaggagagagggTTCCTGGAGAAGCGACTCGAAGAGGCCAAGCAGAGAATCCAAACTCTGGACAGCGAGAACGAGCTCCTGAAGAAACGTGTGCAGGAGATGGAGAAACAGCATTCTGGTGGAGAGCAGGGTGAAGGTGGTGGTCTGCAGGCCAAGCTGGAGGCGTTAATGAGTCAGATCGTCCGCCTGCAGGCTGAGAAGAGCGACCTGGTAGCCATAAACTCTGAACTGCAGCTGAAGATGAGCCAGACTTCTCCGGAAGATTCCTTCATTGAGATCCGCATTGCAGAGGGTGAGATGAACGTGACCAGAGATTTACCTCCTCAGAAAGACTTTTCAGCATCTAGCACgatTAAATCCGACATGGCTGGGTCTCGGCTGGAATCAGAGGAGCAGACGGTGAGTCAGCTCCTGCAGTCTCTGAGACTCGAGACGCAACAAAAAGAGCAACTGCAACACCAAATACAAGCTGCACAGAAGAGGATTGCAGAATTGGAGCTGAAGGAACCCAACAGTGAGAGTGGAACGCAGACGTCTCTGCCCTGTGTGACCGCTACACAGGAAGCGCAGAGCAAGAGCTCTCAGGAGGAAACAGCCAAAtctgCCTCTGAGGTGGAGAACCTGAAGACTCAGTTAATGAATTTGTTTAAAGAGCTGCAGCAGGCTCAGAGTAAACTGGACCAGGCGGAGAACATGAAGAAGAACTTCCAGGACAGGTGTAAGGAGCTGGAGCAGGACCTGGGCACGCTGAAGACTCAGCTCggggagagagagcagctgcAGGCTGAGAACGACAGACTGAAGGTGCAGCTGGAGAGCATGCAGGCTGCCAACAAACTGGAGCAGAAGAAGGTTCAGGAGGAAAGGAATGATTTGGCGCAGCTGAAGGATGCGTACACCAAGCTGTTTGAGGATTATGAAGAACTTCAGCAAGAGAATAAGAAACGACAGgGAACTGTATCACGGGAGGAGTATGGTGAGCTTCAGTCCAGAATGGTTGCAGCAGAACAAGCTTTAGCAGACAAGCAGCAAAAGATCGACATAATGAAGCAAGAGCTGTGTGAGAAGGACAAAGAGCTGGAGACCATCTCTGTGTTTAAGGCTCAGgCAGAGGTTTATTCCTCAGACTTCTACGCCGAGCGAGCTGCGAGGGAGAAGATTCACGAGGAGAAAGAGCGCCTGGCTGCTCAGCTGGAGTTTTTCAAGAAGCAGAATATCCAGCTACAGGATGAGGTGGAGTCAATGGGCAGGCAGTCTATGAGTGAGATGCAGAGGAGACATGTGCCTCGTGGTGCAAACCCAGGCGATTCTTCTCCACACCATCACCTGCAGGGTGGCAGAGttGATTGGCAGCAGCAGGTGAATATTCCTGAGCATGCTTGTCCTAAATGTGGGGAAGTCCTTCCTGATCTGGACACTCTGCAAATCCACATCATGGACTGCATCATCTGAGCATTAAGTCTTCACCTGAGTGACATGAAGAACAGGACAGCAGGATCTGAAAATGCATTTACTATACAAATCCCTGCACTCATATTTAACATAATCTCCATAGAGAACTTCATTCAATTTATTCTCTAATTGCTCTGCAGATCTAATTACTCACCATTCTTAAATACGTAACAGAAATGGCCGAGGGCATGGAAGAAGTGATCTATATAGCCTGTGGTAAGATGTTTTGACTTAAATGATCATGAGGTGAATGAAGCTAAAAGAATGCTACAGCCGGAACAGGAGGCTGGAAATGAATATGGACTGTTGAATAAAGAGTAGGatctatatttttgtttatatagtataatataatatatatagagagagagaaataaaaattaagataGGAAAGGTTTAAGTTCTTGctttgatttatatttagattatattttattttggagaAGATACtttgtgttaaaatatatttaccttcattagaatgggggaaaaaaacccacagggAGTGTATTAAGAAACCTGTATGAGCCAG

Function

GO:

id name namespace
GO:0007409 axonogenesis biological_process

KEGG:

id description
K19946 OPTN, FIP2; optineurin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU329874 lncRNA downstream 161775 7229005 ~ 7229440 (-) True G278275
TU329864 lncRNA downstream 316630 7071746 ~ 7074585 (-) True G278265
TU329813 lncRNA downstream 512274 6877752 ~ 6878941 (-) True G278225
TU329377 lncRNA downstream 599740 6791262 ~ 6791475 (-) True G277881
TU329374 lncRNA downstream 603744 6783659 ~ 6787471 (-) True G277878
XR_004579863.1 lncRNA upstream 10841 7414348 ~ 7416071 (-) True LOC117599447
TU329881 lncRNA upstream 21335 7424842 ~ 7425915 (-) False camk1da
TU329920 lncRNA upstream 92065 7495572 ~ 7496263 (-) True G278312
XR_004579997.1 lncRNA upstream 127277 7530784 ~ 7534282 (-) False LOC117599592
XR_004579998.1 lncRNA upstream 127277 7530784 ~ 7534281 (-) False LOC117599592
XM_026923455.2 mRNA downstream 100824 7249424 ~ 7290391 (-) False ninj2
XM_026923454.2 mRNA downstream 104255 7249424 ~ 7286960 (-) False ninj2
XM_026923457.2 mRNA downstream 136571 7248866 ~ 7254644 (-) True ninj2
XM_026923054.2 mRNA downstream 146745 7043417 ~ 7244470 (-) True erc1b
XM_026922858.2 mRNA downstream 356187 6926768 ~ 7035028 (-) True wnt5b
XM_026922817.2 mRNA upstream 18481 7421988 ~ 7500079 (-) True camk1da
XM_034313286.1 mRNA upstream 106581 7510088 ~ 7527943 (-) False LOC113531701
XM_026922562.2 mRNA upstream 106669 7510176 ~ 7527943 (-) True LOC113531701
XM_034313285.1 mRNA upstream 106669 7510176 ~ 7527925 (-) False LOC113531701
XM_026923324.2 mRNA upstream 136417 7539924 ~ 7560116 (-) True ttll12
trnam-cau_46 other downstream 1288068 6103076 ~ 6103147 (-) True trnam-cau_46
XR_003403345.2 other downstream 1358022 6033029 ~ 6033193 (-) True LOC113532437
TU329048 other downstream 1399281 5981138 ~ 5991934 (-) False copg2
TU329042 other downstream 1406651 5982292 ~ 5984564 (-) True G277575
TU328176 other downstream 2418970 4970314 ~ 4972245 (-) False tmpoa
trnal-aag_11 other upstream 190220 7593727 ~ 7593808 (-) True trnal-aag_11
TU330291 other upstream 649581 8053088 ~ 8068077 (-) True G278634
TU330637 other upstream 815054 8218561 ~ 8219680 (-) True G278912
XR_003403340.2 other upstream 1405713 8809220 ~ 8809338 (-) True LOC113532431
TU331209 other upstream 1803844 9207351 ~ 9208563 (-) True G279415

Expression Profile