RNA id: XM_026923507.2


Basic Information

Item Value
RNA id XM_026923507.2
length 8080
RNA type mRNA
GC content 0.49
exon number 24
gene id shank3b
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 8250112 ~ 8281879 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTCCCCACATACActtacaaatacacacatgcacacacacatacacacatgtacacgcATACACTCCCACAGAGCAGAGACGGATTGCCGGGGAGGAAGTCAAGATGGTATGCGATGAGAGTCCTGGTTGTATAGGGGTTGTGAGGCCAGCGTATTGACCAGtgcacacccacccacccccacaccctcacacacattcCCAGAGCATGCCTATGAGTCCACCTGCCGACGGCAAACATGAGGCTCCCGACAGGCCGCGGCAACAGCACGCCCCTACCAACGGAAACCATGGAGATGACAGCATTCGTGCCTCTCCGGGGTCTAAGGGCGTCTCCAACGATTCCATGGAAGATCTCCACGGAAATGCCGTCATTATCCGCATCGGAATCCCTGACCTTCAGCAAACAAAGTGTCTGCGCTTGGACTTGGAGGCTCCGGTGTGGGTGTGTAAGCAGCGGGTTTTGGTTACTCTGACGCAGAGCCTGACAGACGTGCTGAACTATGGCCTCTACCTCCCGGCTTTCAACGGCCGAGCCGGCAAGTTCCTGGATGAAGAGAGACTGCTCAGGGAGTATCCTCTCCCTACTGTCACACCTGTACCTTACCTAGAGtttcGTTACAAGAGACGTGTTTACACTCAGAGCCATGTGGACGACAAGCAATTAGCCAAACTTCACACTAAGGCCAATCTGAAGAAGTTTATGGAGTATGTTCAGCAGAGGAGTGTGGAGAAGGTGTGCAGGTTCCTGGAGAAAGGGCTAGATCCCAACTTCCATGATGTAGAAACTGGAGAGTCGCCCCTTACCCTGGCAGCACAGTTGGACTCAAGCGCTGAGCTAATTAAAGTTCTGAGGAGCGGAGGAGCTCACCTGGACTTCAGAACTAGAGACGGCATCACCGCACTTCACAAAGCCGCACAGACGCACAACCACATAGCTCTAACTACCCTATTGGATCTGGGAGCGTCTCCGGACTATAAAGACAGCCGTGGGCTCACTCCTCTGTACCACAGCGCTATGGTGGGGGGTGACCCATACTGCTGTGAACTGCTGCTGTATGATCACGCTCAGCTCGGCTACAGTGACGAGAATGGCTGGCAGGAGATCCACCagGCATGTCGACACGGAAACGTGCAGCACCTCGAGCACCTGTTGTTCTACGGAGCTGAGATGAGTGCGCAGAATGCCTCAGGAAACACAGCGCTGCACCTGTGTGCTCTCTACAACCAGGACGGCTGTGCCCGAGTGTTGCTATTTCGAGGGGCAAATAAAGACATCAAGAACTACAACAACCAGACAGCATTCCAGGTGGCCATCATCGCAGGGAACTTTGACCTGGCTGAGATCATCAAGATCCATAAAACCTCAGACGTAGactgtcTCTCTGTTGCAGTGCCTTTCAGGGAGAGCCCCTCATACTCGTCTCGGCGCCGcggggtgtgtgtgtcaccACGCCGCTCCCTGATGCGTTCGGCCAGCGATAACGCACTGGACGAGAGTCTGCCTGCCCCCTCGCCAGCCCCTTCACTACACAGCCTGCCCCCACTGGAGCCCGATAACACCATACCAAGCCCACACAGTCCACAGGGGGGACACACACGCAGCCTCAGGAGACACACCCGTGGCCATCTCAGCCCTGGCAGTCCTGTGCAGAGGGATCCCAGTCCCCCTGCTGTATCGCGAGGGCCAAAGCGGAGGCTCTACAGCGCCGTGCCTGGACGTACCTTCATCGCTGTCAGCTCACACACTCCGCAGGGTGAGGGTGAGATCACACTCAACCGCGGGGagagggtcaaagTGCTGAGCATAGGTGAAGGAGGATTCTGGGAAGGCTCAGTTAAAGGACGAACTGGTTGGTTTCCTGCGCACTGCGTAGAGGAGGTTCAGTTGAGACAGTACGACCCACGACTAGAAACAAGAGAAGATCGCACCAAGAGGCTTTTTAGGCATTACACCGTTGGGTCCTATGATAATTATACCTCCTACAGTGATTATGTAATTGAAGAGAAAACTGCCACTTTGCagaagagagacagtgagggatTTGGCTTCGTTCTTCGAGGGGCTAAagCTGAAACTCCAATTGAAGAATTCACTCCAACTCCTGCGTTCCCTGCGCTGCAATATCTGGAGTCAGTGGATCTGGATGGGGTGGCATGGAGGGCAGGGCTACGAACCGGGGACTTCCTGATCGAGGTGAACGGGGTGAGTGTGGTAAAAGTGGGCCATCGGCAAGTGGTCTCTCTGATTCGGCAAGGTGGGAGTCGTCTTCTTATGAAAGTGGTATCAGTGACACGGAAACCTGACACCGGAGATGTTGTTCGCAAAAAGGCTCCTCCACCACCCAAGAGAGACCCCAGCACGAGCCTAACCCTGCGCTCAAAAAGCATGACCGCAGAGCTGGAAGAGATggCATCAAGGAGAAGAAGGGGAGAGAAGTTGGATGAGATGCTGAGTTCTCCAAAAGAGCCTGTCGTGGTGATGAGGCAACGGCCTTCAGATGCAGACTCCAGAGCAGCCACTGTGAAACAGAGACCGACCAGCCGACGCATCACACAGGCCGAGAttagttctctgTTGGAGAGGCAGGGGATGCAAATATCTCCTGGGGTGTCCCTTGGTGTGGATAAAAGTCACATACAACTGCAAGGGATGACCAGAACTAAATCATTTGGTGCACCAGAAGATGAAAGAATATCTGCTTTAATTGGGGAGCACCGCTTTCCAAGAAGCTCCTCAATGACTGACAGCTTCCGACAAGACAGTATCCCACCCCCTCCACAAACCGCACCTCCTCCCCCTCCTACACCATACTTCCTGGAATCAGGGCCTCCTCCATCTTTCTTGCCTCCTCCGCCCCCAACACGTACAGCCAATCAGACCCGTTCTAGCTTCCGGCCAGGTGCAGAACCCAAGCTCCATGGTCCTGTCACAACTGACCGCCAGAGGAAGGCTCGTTCTATGATTATCCTTCAGGACACCGCCCACCTTCCAGTAGAGCCCGCCCCCATTCCCAGGCCAGCAACACCTACCTCTGGGGCAGCTCCTCCTGAGCGTGGTCGTAGGCGTGGCCAGCCTGTGGAGAACCCATATGCCAATGTGGGCCGTTTGAGTGCAGTCTATACCCCTGCTAAGCCCCAGCGCAGGAAGAGTCCACTGGTCAAACAAGGCCAGGTTGAGGAGGGCACAGCTGCCCAGGCTGGCACTGGTAGGGATCCCTCTCCCCTAGGAGGAGCTCGGATCCCTCATAGCAGCCGAGCAGAGCAGTTCCAGCAGCAGGTGCTCTCTGAGAGGGCTAGGATTACACCTCCAGGAGCTCGTCGCAGGACCAGTGTGTTCCTTTCTGTTGAGGGGAGCACCACCGAGCCTCAAACCACCCCCTTACTATCTCAGTCACACTCAGTGGATGAACTGGCTGAGCTGCCACCTCCAGCACCCATGCTTTCTCCTGGTCTGCCACCAGGGGGTTCCACATTTATACATCCTCTCACTGGGCGTCCTTTGGACCCCTCCTCTCCGTTAGCACTTGCTTTGGCTGCAAGAGAGCGTGCACTCAGTGGCCGTACTACACCCACTCCCACACCCACTCCCTCACCATCACCCACTCAGGGCAGAGCAGTGGAGAGaccagagacagagggaggagtCACACCACCTGCTGCTCTTGAGGCTTCACCTTCTGATTCCTGGAGGGAAGAGCCTGTCAGCATCACAACAGAAACTGCTAGTCAGGTGACAAATGGCAGCCCTGTATCTGGGCGAAGTTTGGAGGAGTCCATGGTGCCACCAACCGTGCAGATCGTCCAACCAGCATTGATTGACACAGAGCACAGCCAACCAGTAGTTCCACCTTCCATGCCTTCACCTGCCCCAACCCTCTCAAACCTGGCAGGGCGGAGCATGACCATGAGCTCAGAGGAGGAAGCAGAGCCCTACACAGTCACCTTGCCCCCTGCACTTCTCTCATCTAGTGATGAAGAAACCAGGGAGGAACTCCGCAAGATTGGCATAGTCCCACCCCCTCAACCCTTTGCCAATGGCCTTCTAATAAAGGAAACGCCCAAAGTCACTATCAGTATTTCTCCAGGGGCGTCTCCAAGGCCTTCTATATCAAAGATCTCCTCTGGCAAAGCAAGTGACTCCACAGCAGACTCCGGCGTTGAGGACCCCCACATGGAGACCACTAGTACTGTTTCCACAGTCTCCAGCATGTCCACTTTGTCCTCAGAGAGCACAGACTCTGCCCACGCCAGCAAGCCACGTTGCGGGGTGGGCCGCGGCCGCCCCGCCCATCTCAGGGACCCACTGCTTAAACAGTCGTCAGACAGTGAGCTGCTTCCACACCCACCCAGCACAGGCCCCGTCCGTCCACGCTACCTGTTCCAAAGACGCTCTAAACTCTGGGGGGAGGAGACCAGGGCTCAAGTGGGCATAGCTGATGATAGTAGGCCTGCTGCAATGGGGGCAGAGTTACTAAGTAAAGATACGCATTCTCTAGGGGAGGAGCCACCAATGGGAGCACTTGACCCTGGTAGAAGGTCACCAGTGGGTGGCGCCAGATGTGAGGAGAATGGAGAAGAGAGTAAATCACTCTTCAGCAGCCTTGGTGAGCTCCACACCATCTCACAAAGGAACTATGGCACCACTTTCACCATCCGCCCGGGCAGCCGCTACCCAGTAACCCGCAGGACACCCAGCCCGGGGGCCACTCCAGAGCGAAGTGAGCCTCTGGGGCCAATGCgcacatttggtccccaccaccaccaccatcaccaccatacCATCCTCAAGTCCTCCAGCCTGAGCCTCCCACAGGAGCCCAAGGAGGTGCGATTTGTCATGCGGAGTGCCAGTGCTCGTGCCCGCAGCCGCTCCCCTTCCCCGTCGCCCTGTGCCTCCCCCTGCCCCTCACCAGTCCTTGGCGCCCCACTCCTGGCCCTGCGGCCCTTCAGACAGCGCCCTCTTGCACTGTGGAGCAAGTATGATGTAGGCGAGTGGTTAGAGAGTGTGGGACTAGGGGAGCATCGTGCCCGCTTCTTAGAGCATGAAATTGAAGGTGCGCATCTACCTGCGCTCACCAAGGATGACTTAGCTGAATTGGGGGTGACACGGGTGGGGCACCGGATGAACATTGAACGTGCACTCAAACAGCTGTTGGAGAGCTCAGGAGCTTAATAAATTCTAGAGAATAGAGTTAAATAAAGTCCTTGCCAAATTGTACCACTATTATTTGCAGACCAGTAGCCAAACTGGCTAAATGATTCCTCAGCCTCTCTCATGAATAATCTATTTGATTAAACACATCCAAGCACAATCCCAAAGCGTAAGACCTTACGCTATTTAGTCACAATTGGTGTGTAGTCTGTAGACCTGTTTTGCTGTGTTTGAAAATGAGTTGATTGATAGGCCACGTGCCCCAGAAGGGATCCATCTAGTCAGTGGACTGGACTGGCATGGCTGCTATATtacaaagagaagaaataagGATCTCAGTAATTCACTGTTgggagcaacaacaacaaaaaaaacacctagaCCTTTTAAAGCCAATGCTTCCAAGTGCCCAAGGTTTACAATTCATGATATTTATTCACAGTCTTTCAGTCAAAAATGCCTTGCAGGAAACTTCGAATTTCATACAACAACATACTGGATGAGGCTTGTAAGTGTACAAGTGACAATCTCCCCTTAAAGGTGCACTATGTGGATACAAATTCTAAGCAAAGTTTTGCTTTTTCAAGTAGGCCATAATAATATGAGCTAATTTTTCTGTGGATGTTTGAACTGGTTCCactattatttatcatttattctgTCTGTGATTTCTGTAATAATGTACTCATGTGTTTGTAgcataaattaattcatttaataagGAAATAAAGGCACAGAATAGCAAAATGTTCATAAAGCTATTGAAGTTAAAAATGTCAGTGATCAGCATCAATTTTCAATTATTTACAATGATATTCAGTGTAACAATCCAACATAATGCACCTTTAACCCTGAAACAACCTTTCATAATACAAGTGTGGCCTTGAGATAGTACTGCCGCCATCTAAATTTGATAAAGAAGAGTATTTTCAGGAATACAGTCAGTTTTATATGTGTATGATATATATGGGCGTATATATTCAAACAACAGAATGTATGAGTGTTAAATGAAATATGCGTCTTatgccctgtgtgtgtttattttatcatattttatctttgttacgttaaatatgaattaatagCATAAGCCCAATCATAGTTACTATCTCCCCCATAGTATTCCTCGTGAGTTCTTAGATCGAAAATATTTGCAGTAAAGAAAACCTTTCTTAAACTTAGGAAATGAGTTGAAACACCGCTTATTGGTTTTTGtcatttatgaataaatgtgaGGTGAGATTGTATATTgagtatttattttcaattagaGAGGCACTTAAATACTATGGGGAGTAGGTAGCAGTTTTGTTACCTTTTTGTGTTCTGGATGGATTAACAAGGTGTCATGATTTAATGCTGatttgtaaaattatttgattaatagATTGTTCTTTTGTGTAATTGGGAATTTTGTTATAAAACAGGCTTTGGTTGAGTGAAAAGTTTATGCTACTTAAGGGCTTACAATCATGCTAATCGTGTTTATGATGCACATGTGGACTGACACGATTGTACACTTTTCAAAAGAAAGATGCTCGTATGTGACACTGATCACTAAACATCAAGGAGTCTAAGAggcagttttttaaaattacaagaGCCATGAAAATACGAAGAAGCCAATGTGCAAGCTTTCAAGTTCAAATTATGATAGAAGTAAAAAGGCTTTTCTTGTAATGCTGTGAAAACGTCTGGGGACTAAGCTGCCCTGAACACTACCTTTGATGACGTCCAGACCTAGCACAGTAATGCGCTTTAAATTAAATCCAATATTTTTACAATTACCAAAGTAATTGAACATTCTAATAGTGGCTCTGTAACCAGATCCATTTAATCATAATGTTAAACGCAAGATAAATTTCACGTCTATCTGTCGCCAGAATCCTACCACGTAACTCAAGAGACTCACACTTGCCTCGCATCCAGATGATACATTTGCACAAAGTGGAGGGTGCTACTTTTTTATAAGCCATTTGCATAGAACACTGctgttctccctctctctctcgctctttctctttctctctctctctcctgtcctctctcttCCTATCAGATGCACAAACACATCCCACTCAAGCACAGAATGATACACAGCTTCATCGACGGTTGACAGTACCCAGTATGCAGCTGGCAGTCTCAGTATGGATGTAATATCCATCAGGGTATAACAGATCTTGAGCATATAAGAGCTGTTGAGTTGCTAAAGCAATGGACTACTATGATGACTGGTCAGTGTGTGGCACCCACTCACTCAATTTAGGAACTAAAAGGACCGCTTTCTTtggagttttaatgtttttttttttttaatgtatttgttgTTGAATTCAATTCAGTAATTCGAAGTACAAATTCTGACCATGTATGCTTTCAAGAGAATATTGTACCCAACTAATAAGTTGACATGTTTATAAATCTATTGCTCATGGCTATGAGGGTAAATCTGGCACATTGTCctggatgaaatgaaatgaaagagcCTGGCCATTTCTGTGTTGTGTTCATCCACCTCTATTTCTGAGTTCTGGACTGCCACGAAACTGCACTCGACATCACTTGATGTTTAGCCAATAAGTTGAATCTAAAAGATTAGATGAAAACAAACATGGTGCAGTGTTATGCAGATATCCGAATATGTGAAAGATACTCTAAAgcaattacaaaacaaaaagcaaactCAGTGTTGATCAGTGTTGATCTGTCTGTGTAGTTCATCATGTGAGGTATCAAAGGTGTTGAAAGATCAGGAACTTTCACTCGAATACAGTTTTACCTAGATGCAGATGTAAGCATAAGCATAAGGAAAACATCACGGCCTTCCAGAAATACTCAGTTTCTATCCTCGTGGAAGGTGTTTAAGTTTAAAACGTAACTACATGCCTTGTATGACAGTGTTTTTGATAAAGGAAACATGATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330657 lncRNA downstream 10436 8238974 ~ 8239676 (-) True G278920
TU330636 lncRNA downstream 32819 8217013 ~ 8217293 (-) True G278911
TU330235 lncRNA downstream 282691 7966819 ~ 7967421 (-) False avpr1ab
TU330151 lncRNA downstream 371095 7796835 ~ 7879017 (-) True G278520
XR_004579996.1 lncRNA downstream 715831 7530784 ~ 7534281 (-) True LOC117599592
TU330707 lncRNA upstream 107619 8389498 ~ 8390559 (-) True G278963
TU330836 lncRNA upstream 330239 8612118 ~ 8612342 (-) True G279064
XR_004579873.1 lncRNA upstream 416551 8698430 ~ 8698791 (-) True LOC117599455
TU331172 lncRNA upstream 911737 9193616 ~ 9194003 (-) True G279382
TU331392 lncRNA upstream 1054457 9336336 ~ 9337530 (-) True G279588
XM_026923517.2 mRNA downstream 2366 8239755 ~ 8247746 (-) True tymp
XM_026923834.2 mRNA downstream 23991 8221552 ~ 8226121 (-) False si:ch73-139j3.4
XM_026923833.2 mRNA downstream 23991 8221552 ~ 8226121 (-) True si:ch73-139j3.4
XM_026922658.2 mRNA downstream 135326 8103474 ~ 8114786 (-) True c18h12orf66
XM_026922659.2 mRNA downstream 136078 8103474 ~ 8114034 (-) False c18h12orf66
XM_026922672.2 mRNA upstream 1917 8283796 ~ 8290673 (-) True cdnf
XM_026922676.2 mRNA upstream 19600 8301479 ~ 8311669 (-) True dclre1c
XM_026922634.2 mRNA upstream 41116 8322995 ~ 8334489 (-) False dmtf1
XM_026922633.2 mRNA upstream 41116 8322995 ~ 8334489 (-) True dmtf1
XM_026923666.2 mRNA upstream 76431 8358310 ~ 8388357 (-) False tspan9b
TU330637 other downstream 30432 8218561 ~ 8219680 (-) True G278912
TU330291 other downstream 182035 8053088 ~ 8068077 (-) True G278634
trnal-aag_11 other downstream 656304 7593727 ~ 7593808 (-) True trnal-aag_11
trnam-cau_46 other downstream 2146965 6103076 ~ 6103147 (-) True trnam-cau_46
XR_003403345.2 other downstream 2216919 6033029 ~ 6033193 (-) True LOC113532437
XR_003403340.2 other upstream 527341 8809220 ~ 8809338 (-) True LOC113532431
TU331209 other upstream 925472 9207351 ~ 9208563 (-) True G279415
trnay-gua_2 other upstream 1340654 9622533 ~ 9622619 (-) True trnay-gua_2
TU332243 other upstream 1987878 10269757 ~ 10296121 (-) False LOC113532274
XR_004579975.1 other upstream 2713226 10995105 ~ 11007143 (-) True si:ch211-51e12.7

Expression Profile