RNA id: XM_026923517.2


Basic Information

Item Value
RNA id XM_026923517.2
length 2591
RNA type mRNA
GC content 0.45
exon number 10
gene id tymp
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 8239755 ~ 8247746 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGGTTGTCATAGTTAATGTGTGACTGGCAGGTGGGCCTGAGAGTGCCGGGTGATTGGATTAGAGGCTGTGAGTGTTATACACACTTCTGAACTTGGGATTTTACAGCACTGCAGTCAGTGTGCATATCTGCCTTACTGTAACAGCTGACAGCTTTACAAGCACACCCACGTGAGTGCAAGAATGTCACACACGATGGACGCCAGTAGTTTCCCAGAGATGATCAGGCGGAAACGGGACGGTGGTCAGCTGAGCGCAGAGGAGATCCACGCCTTTATAGAAGGAGTCAAATCACACACCATTCAGGAAAGTCAAATAGGTGCTATGCTTATGGCCATACGGCTGAAGAACATGGTTGCCGAGGAAACCATGGTGTTGACGAAGGAGATGATGATGTCGGGTGAAGTTTTCCACTGGCCCAAGGAATGGGCGGGGCTTGTGGTGGATAAACACTCGACGGGTGGGGTCGGGGACAAGGTCAGCCTTCCACTGGCCCCTGCTTTGGCTGCTTGTGGGTGCAAGGTCCCTATGATAAGTGGACATGGACTGGCACACACTGGAGGCACACTGGACAAACTGGAGTCCATCCCAGATTTCAACATCCACCAGTCAGTAGAACAGGTGAAGCAGATACTGCAGGATGTAGGCTGTTGCATTGTGGGTCAGACAGACACACTGGTACCTGCAGATCGTGTCCTCTACGCTCTCAGGGACATCACTGCTACCGTGGACAGTGTCCCACTTATCACAGCATCAATAATGTCAAAGAAGGCAGCTGAAGGTCTAAATGCACTTGTGTTAGACGTGAAGTTTGGTAAGGCTGCTCTTTACAAAGACCTGGACAGCGCTCGGAGCCTCGCCCAGTCACTGGTTACAGTGGGAAACAGTTTAGGTATAAAAACAGGGGCGGTGTTGAGCCGGATGGACGCTCCTATTGGCCGATGTGTGGGAAATGCTGTAGAGGTATATGAAGCTTTGGAATGCCTCAAAGGGCGTGGCCCTGATGATCTGAAGACCCTGGTTACATCACTGGGTGGCCAGGTGCTGCAGATGAGCGGCCGTTCAGCTACTCTGAAGGAAGGGAAGGAGGCAATCAGTGAGGTCCTGAAGAATGGGAAGGCCTTGCAAAAGTTCCAGGCCATGCTGGAGGCCCAAGGGGTGACTGCGGCTATAAGCCACTCCCTCTGCTCAGAAAAGGCTGAATACTTTAAGTACCTAAAGCGTGCACAGTACCAGACAGAGCTTAAGGCAACGGATGATGGCACAGTTTTGGGAATAGATGGTATGCCCATAGCCATGGTGTTGCACAAGTTAGGAGCAGGCCGTAGCAAAGCAGGGGAGCCGATCAACCACAGCGTGGGAGCAGAACTCCTGGTAGACCCAGGACAACAGATAAAGAGAGGTCAGCCCTGGATCAGAATCCATCATGATTGTGCAACACTGAGCTCACAGCAGCACGCTGACCTGCAGGGGGCTTTGGTCACTGGCAGTGGAGATGAGTACCAGGACAGTGCTCGAGTGGCAGAGTTCATCCTACCAAACTGATGTCTCTCCTGACACAGCCTGCAGGTTGTCTGAACCTGGTGCAAGCATAGTGCACTTTTTCTGATTAATTGAAAATTTTTAGAGTTCTATACTTATTATACAGTGGAATaatttgcataagtattcacccccccttaaacttttctacattattaatgttacaacctggaacagAAAGTACCTAACTGGGGTTATACTAaagactacaaaaaaaaaatactacaaaaaaatAGCCCGTAACATTCAAATGTGGGAAAAATCTATatagttttacatttttgttttttacaaatgaaaaatgcaaaagttgtgattgcataaatattcatccCAGGTGCTCAATTCAGGTGTTAACCCCTGATTTAGCTACCAGCAGAAGTCAcgtaattagttgaatggagtttACCTGTGTGCAAtgaaagtgtcacatgatctcaatttGAATACACCTGTCCTTGGAAGACCCAAGAGTATGTTGGAGAATGTagctaaacaaacagcatcatgaaaaCCGACATGCTATCAACcaacaagtccaggacaaagttaTAGAAAAGTATTAATCAGGGTtaggttattttaaaaaagtcttaaaCTTTGAATATCCTGCAAAGAACAcatttaaatccattattaaaacaaGGAAAGAATACTGAACAACCTAGaatctgcctagaggaggctgTCTACCacggcattagtcagagaaccAATCAAGAGGCCAGGGATAATGCTCAActcatgatgctaccaccaccatgcttcactgtggggatggtgaTAATCCCTACTatagttccaggttgtaacactacaaaagtTCAAGGGAGGGTGGGTTTGATATTTACACAAGTCACTGTAGAGAGgttgggagagagagaatgaaagaaacactgcaaaatgaagatttaagtatgtatgtatcttCTTCAGACTTTATATTCTGTTAAATTccttaaatttattttacaaaatagtcCTAGAAGGTCTAAAATAATGTATatgaatcagaaaaaaaaaaaaatatatatatatatatatatatat

Function

GO:

id name namespace
GO:0006206 pyrimidine nucleobase metabolic process biological_process
GO:0006213 pyrimidine nucleoside metabolic process biological_process
GO:0016154 pyrimidine-nucleoside phosphorylase activity molecular_function
GO:0004645 1,4-alpha-oligoglucan phosphorylase activity molecular_function

KEGG:

id description
K00758 deoA, TYMP; thymidine phosphorylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330657 lncRNA downstream 79 8238974 ~ 8239676 (-) True G278920
TU330636 lncRNA downstream 22462 8217013 ~ 8217293 (-) True G278911
TU330235 lncRNA downstream 272334 7966819 ~ 7967421 (-) False avpr1ab
TU330151 lncRNA downstream 360738 7796835 ~ 7879017 (-) True G278520
XR_004579998.1 lncRNA downstream 705474 7530784 ~ 7534281 (-) False LOC117599592
TU330707 lncRNA upstream 141752 8389498 ~ 8390559 (-) True G278963
TU330836 lncRNA upstream 364372 8612118 ~ 8612342 (-) True G279064
XR_004579873.1 lncRNA upstream 450684 8698430 ~ 8698791 (-) True LOC117599455
TU331172 lncRNA upstream 945870 9193616 ~ 9194003 (-) True G279382
TU331392 lncRNA upstream 1088590 9336336 ~ 9337530 (-) True G279588
XM_026923834.2 mRNA downstream 13634 8221552 ~ 8226121 (-) False si:ch73-139j3.4
XM_026923833.2 mRNA downstream 13634 8221552 ~ 8226121 (-) True si:ch73-139j3.4
XM_026922658.2 mRNA downstream 124969 8103474 ~ 8114786 (-) True c18h12orf66
XM_026922659.2 mRNA downstream 125721 8103474 ~ 8114034 (-) False c18h12orf66
XM_026922687.2 mRNA downstream 269184 7966873 ~ 7970571 (-) True avpr1ab
XM_026923507.2 mRNA upstream 2366 8250112 ~ 8281879 (-) False shank3b
XM_026923508.2 mRNA upstream 2366 8250112 ~ 8281879 (-) False shank3b
XM_026923509.2 mRNA upstream 2366 8250112 ~ 8281100 (-) True shank3b
XM_026923515.2 mRNA upstream 2366 8250112 ~ 8276874 (-) False shank3b
XM_026923510.2 mRNA upstream 2366 8250112 ~ 8276874 (-) False shank3b
TU330637 other downstream 20075 8218561 ~ 8219680 (-) True G278912
TU330291 other downstream 171678 8053088 ~ 8068077 (-) True G278634
trnal-aag_11 other downstream 645947 7593727 ~ 7593808 (-) True trnal-aag_11
trnam-cau_46 other downstream 2136608 6103076 ~ 6103147 (-) True trnam-cau_46
XR_003403345.2 other downstream 2206562 6033029 ~ 6033193 (-) True LOC113532437
XR_003403340.2 other upstream 561474 8809220 ~ 8809338 (-) True LOC113532431
TU331209 other upstream 959605 9207351 ~ 9208563 (-) True G279415
trnay-gua_2 other upstream 1374787 9622533 ~ 9622619 (-) True trnay-gua_2
TU332243 other upstream 2022011 10269757 ~ 10296121 (-) False LOC113532274
XR_004579975.1 other upstream 2747359 10995105 ~ 11007143 (-) True si:ch211-51e12.7

Expression Profile