RNA id: XM_034313320.1


Basic Information

Item Value
RNA id XM_034313320.1
length 3622
RNA type mRNA
GC content 0.49
exon number 13
gene id agbl5
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 11035084 ~ 11050606 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGTGTTTTTGTAACACAGAGACGGCTAAGTGGGTTTGTTTGGGTGTTAAAGAGTCCATATAGCGGACGGTGAGCAATCGGTTGGATTTCGCACGGAAACGCAGCACTGTTCAACCCTAGTGCTGAGCTGCTTGGCTTCCTTCCTCTTTATATCCTTTGGCAAAGAACAAGTGGGAAATTAAAAGGTAAACGAATAACAAAGAACCTGATGTGAGCAGTAGatgtgaggtgtgtttgtgagagattATCAAAGCGCAGCATGTTTAAGCAGTAATCTGAGCCCAGAGCCCTGGTCATGGAGGCCCGCTTTGGGAATGTGGTGTTCAGCTCACGATTCGACTCCGGGAACCTGGGCCGAGTGGAGAAGGTGGAGGCGCCCGAACATGATGCTGAGAGAAGCTCGATCTCGCACATCGACTACGAGTTCAACGTCTGGACTAAACCTGACTGCGCAGACACCGAGTTTGAGAATGGGAACCGGTCATGGTTCTACTTCAGCGTGCGTGGTGTCCTGCCAGGTAGACTGCTGAAGATTAATGTGATGAACATGAATAAGCAGAGCAAGCTGTACTCTCAAGGCATGGCTCCATTTGTGCGCACTTTTCCTGTGAAAATGCGCTGGGAGAGAGTCCGAGACCGACCAACATTCGAGATGTCAGAGAATCAGTTCACTTTGTCGTTTGTGCATCGTGTGGTGGAAGGGAGAGGAGTCATCACATACTTCGCTTTCTGCTATCCATTCTCATACACTGAGTGCCAGGACATGCTTCTGCAGCTAGACCAGAGACTGCTCAGCCATTCTCACACACTGGGGCCATGCAGTCCAGCAGACAGTCTGTATTATCACCGTGAGTTGCTGTGTTACTCTCTGGATGGGCACAGAGTAGACCTGCTGACTGTGACCTCCTGCCATGGCATGCTGGAGGAGAGAGAGCCCAGACTGGAGAAACTCTTTCCTGACCACAGCACACCACGACCACACCGCTTTGCTGGCAAACGGGTATTTTTCATCAGCAGTAGAGTACACCCTGGTGAGACACCCTCCAGCTTTGTGTTCAATGGCTTCCTGAACTTCATTCTGAATCAGGAGGACCCGCGGGCGCAGATGCTGTGCCGGATGTTTGTCTTTAAGCTCATCCCCATGCTCAATCCCGATGGAGTTGTCAGAGGTCACTATAGGACGGACTCGCGTGGTGTGAATCTTAACCGACAGTACATGAACCCGAGTGCTGAGCTGCACCCTTCCATCTATGGGGCCAAATCCCTCCTCCTCTACCATCACCGGCACAACCGCCATAAACCCAGCTCTCCCTCAGCACTGAAACTCTCCAACCAGTCCAACACCACCACCCCAACCCTGACCACGCCCTTCGAACTTGAACACTACCTCAACTGCCGTAACGAGGTGGAGCGATTGGAGGGCCCGACCCTCGACCTCTCGCAGATTCCCATGCAGATGGAGGAGAGCTGGGAGAGTAAAGGCAGAGTGAAGGGCAAGCTTGGGCTAGGCGATGAGAACGAAACCACACCAAGTCGGAGTGAAGCTTGCGTCTCTAACCTTGCCCTGACAGAGCAGATCCTGCCCCAGGAGAGTGGAGTGGCCTATTACATAGACCTACATGGCCATGCCTCCAAAAGAGGATGCTTTATGTATGGGAACAACCTACCTGATGAGAATCAGCAAGTGGAGAACCTGATGTATCCAAAGCTGATCTCGTTGAACTGCGCCCATTTCGACTTCCTTGGTTGTAATTTCTCGGAGAAGAACATGTACGCACGGGACAAGCGTGATGGTCAGTCTAAAGAGGGCAGCGGCAGAGTGGCCATACACAAAGCCATTGGATTAGTTCACAGTTATACGTTGGAGTGTAACTATAACACAGGGCGCTCTGTCAACACCATTCCACCTGCCTGCCATGACAATGGTCGAGCCactcctcctccccctccagCCTTCCCTCCCAAATACACACCCGAGGTATACGAACAGgTTGGCCGTGCAGTCGCTATAGCAGCGCTGGACATGGCTGAATGTAACCCGTGGCCGCGGCTTGTCCTGTCCGAGCACAGCAGCCTGGTGAACCTCCGAGCATCACTGCTCAAACATGTACGCAATAGCAAGGGCTTGGGCTCCAATGGCCGCAAGAACGCAAACAAGGCTCCCAGCCCTCCGAAATGCACAGGCTTGAGCAGCTCTGTTTCTGAGAATTCCCTGAGCCGGAGTCGCAGCCACAGCACCCGGAATGGCAGCATCACTGGGAACAAGCAGACGCCTCCACAGCTGAAGAGTTCTCCTAGCTTTACATTTGGCTGGAGCAACTCTGGAAATGCCCCCAGCTCACACAGGCCTGCCCACAAAGCCCTGGGGCCAATCAGAGAGTCGAAAACTCAGGAGAAGAGGCGCCCACACCATCTCGGCCACCGCCTCTCACTCCACTGTCCCAGCAACAGCCAAGCCATCCCAGCACGTCCCCCGCTCTCcccttcatcctcctcctcctcctcttcctcctctccctcctcctcctccttggGGGCGGGGTCAGCCTCCTGCTCCATCAATACGGCAGGTCTGTACTCCCACACCGGCCTGCTCACCAAACTAAGCCCTCTGCACCACACCTGCCTCAGAGACACTCAGAAAGCACAGCCAGCGCAGCAAGAATAACTGGCTGCCGtccgtgtttgtgtttgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagattgagagagaaaatgagtcTCTGATGTGGTGCTTAACTTTAAACAGAAGGTTCTGAggattttaatggttttaatttgaCAAAAGGGGCAGTGATTTACAAAATTGTGAATCTGCTTGCTGGCATTAAAAGCCAAATTTtaaaccttctttttttttaaaacatgcaaataatgggtcttggttttgtttttgtagcaTTGCACTTTGATcatattaatatgaaacacaTACTCAATGTCAATGACTGAATGTAATGGGAACACAAAATGGTGCATAGCAACTGTATTTGAgtgttgttggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgcacgGGTATTACTCTCTTTTCAGAAACATTTGTTTCCTGAGCAGTGATGAATAATTTCTGCAGTATACATTCTTGCACTTTTCTTCTCGTCATTCATTTCTGATTAACtgtcttttgttattttctttgcaATTCAGATTGCTATATATAGAAATTGCCAGTACTATACCATCACTTCTTCATTCTATCTAGCTTCCTGGGGTTAAAACAGTGCATATTGCTGTCAGACGgtatttatttatctctgaAAACAAGACTGCAAAATATTAATACTGTAGCATAACGCCAAATTTATAGATCTTCAGTCATGTCGTTATGAACTGAAAAGCATTGTAGGTCAGTAAAAGAGGAATGATGGATATTTGCTGTAAGGATGTTTTTGTGCAGTAATATTTCTCAAAGGAAGAAATAATTACCAATATCAGTAAAAGTAATAGTTACtcagagcttaaaaaaaaaaaaaagtctgtcccatcacagattttttttcactgtt

Function

GO:

id name namespace
GO:0035611 protein branching point deglutamylation biological_process
GO:0006508 proteolysis biological_process
GO:0009790 embryo development biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0004181 metallocarboxypeptidase activity molecular_function
GO:0015631 tubulin binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23438 AGBL5, CCP5; cytosolic carboxypeptidase protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332613 lncRNA downstream 111207 10930738 ~ 10930980 (-) True G280652
TU332595 lncRNA downstream 133557 10906173 ~ 10908630 (-) True G280640
TU332558 lncRNA downstream 257894 10783361 ~ 10784293 (-) True G280615
TU332463 lncRNA downstream 264290 10776763 ~ 10777897 (-) True G280527
TU332265 lncRNA downstream 571812 10468686 ~ 10470375 (-) True G280360
TU332738 lncRNA upstream 28562 11079168 ~ 11079487 (-) False sobpb
TU332792 lncRNA upstream 119280 11169886 ~ 11172446 (-) True G280812
TU332799 lncRNA upstream 129325 11179931 ~ 11182051 (-) True G280817
TU332800 lncRNA upstream 132460 11183066 ~ 11184143 (-) True G280818
TU332834 lncRNA upstream 209185 11259791 ~ 11259991 (-) True G280841
XM_026922739.2 mRNA downstream 13782 11012219 ~ 11028405 (-) False LOC113531821
XM_034313401.1 mRNA downstream 13783 11012219 ~ 11028404 (-) False LOC113531821
XM_026922737.2 mRNA downstream 15125 11012219 ~ 11027062 (-) True LOC113531821
XM_026923658.2 mRNA downstream 32555 11008342 ~ 11009632 (-) True msgn1
XM_034313264.1 mRNA downstream 35044 11000009 ~ 11007143 (-) False si:ch211-51e12.7
XM_026923287.2 mRNA upstream 2590 11053196 ~ 11065947 (-) True tmem214
XM_026923844.2 mRNA upstream 17131 11067737 ~ 11076762 (-) True mapre3b
XM_034312991.1 mRNA upstream 28567 11079173 ~ 11094176 (-) False sobpb
XM_026922693.2 mRNA upstream 28567 11079173 ~ 11093818 (-) True sobpb
XM_026922823.2 mRNA upstream 188630 11239236 ~ 11259412 (-) False vegfab
XR_004579975.1 other downstream 35044 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332243 other downstream 746066 10269757 ~ 10296121 (-) False LOC113532274
trnay-gua_2 other downstream 1419568 9622533 ~ 9622619 (-) True trnay-gua_2
TU331209 other downstream 1833624 9207351 ~ 9208563 (-) True G279415
XR_003403340.2 other downstream 2232849 8809220 ~ 8809338 (-) True LOC113532431
TU332827 other upstream 188329 11238935 ~ 11259392 (-) True vegfab
TU333108 other upstream 535698 11586304 ~ 11588024 (-) True G281074
TU333129 other upstream 607284 11657890 ~ 11660327 (-) True G281092
XR_003403346.2 other upstream 1530317 12580923 ~ 12581063 (-) True LOC113532438
TU335292 other upstream 4123742 15174348 ~ 15177613 (-) False LOC113531972

Expression Profile