RNA id: XM_034313339.1


Basic Information

Item Value
RNA id XM_034313339.1
length 3249
RNA type mRNA
GC content 0.43
exon number 2
gene id gpr19
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 11760781 ~ 11768919 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctgacagttgtttTCAGCTCTCCAATACTAACAGTCCcactggaagccccgcccccttccatAGCATGCAATTTTCTAGTGTTGtttaactaaaacagacaagCGACACACACACTACGCTTTCTACCTTTGACAAGTGATATGTGAAAGGACCCTGGAGTTGGCAGGTCTGTATTTGGATAGCGTTGTtaaaacaaagcagctttacagaaatccagatgtagatttagagcAAAGCAGAGGCGACAATGGTGAGGAAAAAATCCCTGTGACGTGATGtggaagaaacattgagaggaaccagttCTTATGTACAAACGTACAACACCCAGGTCTGACTTACCACGGCTACAGAAATGGTGTACGCTTTGCCGATGGACGCTGTGAAGCCGTCTCTGCACACGACACTCCTGACATACCTGATGCCGAACAATTCGGAGAGGGACAATGTGTCGACTCTGCCAGCCAGTTTACCCACACCTGTCTGCAATCTGGATACATCCTCGTTCCAACCTAACAGCACGCAGGTGTCCTACGAGCTCACTCCAGCAGAAGTGACCATTCTCGGGCTGATCTTTGGAGTCTTTTGGCTAGTCTCAGTTCTAGGGAATGCTTTGGTGTGCCTGGTGATACACCGCAGCCGCAGAACTCAGTCGACCACGAATTACTTTGTGGTGTCTATGGCTTGTGCTGATTTGCTGCTGAGCCTGGGCTGCGCTCCATTTGTTCTGCTCCAGGTCTCATCCGGGTATTGGCCCCTGAGTACGGCGGCCTGCAAGGCAGTGCGGTACATCCAGCACTTGTGCCCTGGCGTGCAGGTCTATGTGCTCCTTTCCATCTGTGTGGATCGCTTCTACACGATTGTGTATCCACTGAGCTTCAAAGTGTCTCGGGAGAAGGCGAAACGCATGATCCTGGCTTCTTGGCTCTTTGACGCAGCCTTCGTCTCCCCGTGCCTCTTTTTCTATGGATCTTCTTCGTCAATTGCGCAAAGACACTGTGAATTTTTCCTTCCAGGATCTTGGGATGGTCTGGCCTACGCTCTCACTCACCTCCTGTTTGGTTTCCTGGTTCCAGCACTTCTTATCTTATCCTTCTACCAGAGGGTAGTGCGCTACATCTGGCGGATTAGTGCGGACGGACGCACGGTGCGCAGGACTATGAACATTGTACCCAGAACAAAAGTAAAAACCATCAAGATGTTCCTGATGCTCAACACTGTGTTCCTCCTCACATGGATGCCTTTTTACGTAGCACAGCTTTGGCATCCTGATGTATCCGCTGGCCCCAACAGGCAGGGGGCGCTGTTCTTTGTTGCAATCGCATGGATGTCGTTCAGCTCCACTGCTTCTAAGCCAACGCTCTACTCGGTGTACAACGCCAATTTCAGACgaggaatgagagagacatTCTGCATGTCATCGATGAAGTGCTACCGGAGCAACGCGTACACCATCACCGCCAGTTCACGgatagctaaaaaaaattacgTGGGTGTTGTAGACTTGCCAGTGCCGCCAAAAACTCTGATCAAAGATTCCGTTTATGACACTTTTGACCGagaagcaaaagagaaaaaactggCATGGCCTATAAGTGTCAACCCACCAAACACATTTGTATAGAATGGCATAGTGACATGTCTGTCCAAATGTACTCAAAGGTGCTCGGGTTCACATTTTTTTGGAACACACCTAGCATCGAGAACTGAAAGTGCTATACCTATTGTTATTCTAACTGAAACAGACAAGCAGGACAAAAGCAACAAGTTGCTCAGTTTAACTGACAGTAGCCAGGTGTCTAGCTCATGCGTTCGTGAGAAGTACTTTTGTGTCATTTCTGTCTGTAGTATGTTACGTAATGTTAAATTCTTGTATTTTGTTTCTTGTGATCATAAATGTCGTGATGCAAAACGAAACCGTCAGGTTGGAAGACACTTGTTGAGAGAAAGCAATTGTGAGTCTATCTTATCTATATGTCCATGCAGTTTAGATTTGTTCTATGGGTTTGTGAGAGGAATGTCATCTACACTGCAATCGATGGATGGGCTTTCTCACGATACTACTGCTGTGATGATGCTTTTGTTTATTACCATAGAGTGTTAATTTCTGTAGGAAACATGTCCTGTTCCAGCAAATGTCCAAAACTGTGTTGCATTAACAATGATgagcaaagaataaaaaaaagaatcagttGCATATCAAATACAGGCTCAATTTCTTAATGTTTTAGTAGCGGCCTTCTGTGAAAATCACTGTAGAGCAGATGGCATTGTTTCTGCTTTATTGGTGGCAAACAGTGTTAAAAAGATATGGCTCCATTACACAACgaataataaaatgtacttcAATATGAACACCATTAGTGTCTAAATGAACAGTGTGACATTTCCAGCATTAACTTTCCATGCTTTTGGGTTGTTTGATATTAGTTTCATTGTCTGTCTGAGAACAAAAcctcaaatgaaatgaaattcaaCAAAAGACATTTAaccaaatgatgtaaaatctTTCACTGTAAAATCTACTGTCATTAAGCAAGACATAAAATTACCTAAAACATCAATTAACTATGGAAGTTTGGAAAGGCCACAAGGTTTCTTGAGATCATGACTTATTTTCCTCATGATGTCGAAATGCATGATTAGGCATACATGCCTACATACATGATACGGATGAGCGTGTCTGTTTTTAGTTTAATCAGCAACTGATCCAAGAGGAAATAGCTGTATGTTTATCAGAGCTAGACAATTTCCGTCACTTGAGAAGGCCACTCTGCACCTGTACCGTCACGGACACGACAGTGATCCTGAACAGATGATCAGTTTCACTGCCAGATAACTTGAGGGACCGGTATGTCTCCACGGTTGCCACATGATGTTTGAGAGATGCCACCTAAATGGTTTGCGGTTCAGGACATTTTCTTCCACCTTCTTCAAAATCTTCGGAAATAGGATGTAAATACTGCAGAATCTCAGAAAAGCACTTTTGTTATCTTGAGCTCATGAGAAAAAGAGCTCATGCAAACTTGTGATAAATTATGAACAATGAATAAGttggaaaaatagaaataacTGATAGCTTTTCTGGACTACCGTAATCAACAGAATGTGCTGGGTAAATTGAGTATGCTGACAAATTTAAAATAGGCACATCACTGACTTAAATAGTCAGGAGCACTGAATCAAAACTTCATAACCACTGACAAACCCAGCAGAGGAAAGAAATCTTATTAAATGTTTACGCTAAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333155 lncRNA downstream 7889 11739730 ~ 11752892 (-) False dusp16
TU333143 lncRNA downstream 49797 11707690 ~ 11710984 (-) True G281102
TU333109 lncRNA downstream 171094 11589003 ~ 11589687 (-) True G281075
TU333104 lncRNA downstream 177144 11583393 ~ 11583637 (-) True G281070
TU333091 lncRNA downstream 198717 11561725 ~ 11562064 (-) True G281057
TU333441 lncRNA upstream 266687 12033096 ~ 12036362 (-) True G281362
TU333459 lncRNA upstream 327448 12093857 ~ 12094059 (-) True G281373
TU333565 lncRNA upstream 484905 12251314 ~ 12254155 (-) True G281455
TU333597 lncRNA upstream 602550 12368959 ~ 12369265 (-) True G281486
TU333624 lncRNA upstream 691154 12457563 ~ 12459092 (-) True G281510
XM_026922860.2 mRNA downstream 7868 11721063 ~ 11752913 (-) True dusp16
XM_026922859.2 mRNA downstream 13580 11723856 ~ 11747201 (-) False dusp16
XM_026923354.2 mRNA downstream 121050 11610133 ~ 11639731 (-) False snap91b
XM_026923205.2 mRNA upstream 7482 11773891 ~ 11795925 (-) False tbk1
XM_026923206.2 mRNA upstream 7482 11773891 ~ 11795414 (-) True tbk1
XM_026923422.2 mRNA upstream 99383 11865792 ~ 11925507 (-) False ptpro
XM_026923424.2 mRNA upstream 99383 11865792 ~ 11925506 (-) False ptpro
XM_026923423.2 mRNA upstream 99383 11865792 ~ 11925506 (-) False ptpro
TU333129 other downstream 100454 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 172757 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 501389 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 753638 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332243 other downstream 1464660 10269757 ~ 10296121 (-) False LOC113532274
XR_003403346.2 other upstream 814514 12580923 ~ 12581063 (-) True LOC113532438
TU335292 other upstream 3407939 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 5192115 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 5337156 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 6212376 17978785 ~ 17980246 (-) False LOC113532261

Expression Profile