RNA id: XM_034313218.1


Basic Information

Item Value
RNA id XM_034313218.1
length 5282
RNA type mRNA
GC content 0.46
exon number 27
gene id ano2b
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 17907628 ~ 17971244 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGGTGTGGTAGGCCGATGGTTGGATCGAGGAAGTGAGGGGAAATCAACTGAATCGAGAGCATCTGCTGAGCTGTGTGGCCTGGACAAAGCCGAGAGCGGATTTTGTGCCCTGACAGTAGCCAAGTGTCCTCAGACCTGCAACATGGCTATGAACAGTCCAGGATCACCGACACAGGACGAAATGAGGGATAATACAACGAATCAGTCGAAGATGAATGTGGCTGTGAGTGAATCCAGCTCCATCCACAGCGACAGACTGTACAGCATCGCCAGAGAACTTTCTGGAATGGGCCTCGATGCGTTTGACTACATGGAGGAGAGTTCACACTCGGTGGTCAACAACTTCTTGGACGGCATGGCGCCCGAGCCAGGCAAAGGGCTATACTTTGCTGACGGGAAGAGGAAGGTGGACTATGTGCTGGTGTACCGGGTAACGTCAGTGGTTCAGGACTCTCCAGGACAGCACCGGCTCTCGGTCATCTCCAACGGCAGCTTCCCCCGAGCAGGGAGCAAAGAGGCTGAAGCGGTGAAGGAGGACAATGCTGAGGTCGTGGTGGACATGGGACCGACCGATCCGGCCGAGTGCGACAAGCTCAGGATCCGAGATGAGTTTGAGACCCACCTGAGAGAAGCAGGACTGCACATCGAACGTGACAACGAGCACAAGGTCTATGGCCAGGGATTTGTCCGGCTACATGCCCCTTGGCAGGTGCTAAGCAGAGAGGCAGAGTTTCTCAAGATCAAGGTGCCTACCAAAAAGAGCTATGAgctgaaagaagagaaaggtCTGTCAGCAACTATGAGCACAGTGTGGAGGAAGTTGAACCAGCCATTTCAACCCAACATCCCTCACCTGCAGCAGCAAAGCCGCACGAAGTTCCTCTCTCACAGCTTCTCCCGGGACAAGCTCCATCTGTACAACATCGAGTGCAAGGACACCTTCTTTGACAATGCCACAAGGAGTCGAATTGTGTATGAAATCCTTAGACGCACTGCCTGCACACGGACCTGCCAAACCATGGGCATCACTACATTAATAGCTAAAGGGGTGTATGACTCTGCCTTCCCTCTGCATGATGGAGACTTCAAGGACTCTAGGCAAGCAGAAGAGAAGAATGAGAGACAGCTGTTACATGATGAATGGGCAAGATATGGAGCATTTTACAAATATCAGCCTGTTGATCTTATCAGAAAATACTTTGGGGAGAAAATCGGCCTCTACTTTGCCTGGCTTGGCGTTTACACTCAGCTTTTGGCCTTGGCGTCTGTGGTAGGCATCATCGTGTTCCTGTACGGCTGTTTCACCATCGACTCCAATGTTCCTAGTCTGGAGATGTGTGACGAGAAACAGAACTTCACTATGTGCCCTCTTTGTGATCGTGTCTGCGATTATTGGCACCTGAGCACAGCCTGTGGCACTGCCCGCGCCAGCCACCTCTTTGACAACCCAGCCACTGTCTTCTTTGCCATCTTCATGTCCCTCTGGGCGGTAATGTTTCTGGAGCACTGGAAACGCAGGCAAAACAGTTTGAACTACAGTTGGAATATGACGGGAATGGAGGAAGAAGAGGAGCATCCCAGGCCCAAATATGAAACATTACTCCTTcagaagagacagaggaagaggagaaacagaaagaagaacaaaaacGAGCCTGGAGATGAGAGACTTACATGGAAGGACAGATTGCCTGGCTATTTCATTAATGTCTCCTCTGTTCTACTAATGTTTGGTGTAActtttgctgctgtgtttgcGGTGATTATGTACCGCATAACCGTGTCTGCCACGCTGGCCATGAGTCCTGACCCCCAGATCAAAGCCAGTGTGCGAGTGACCGTCACAGCCACAGCTGTCATCATCAACCTAGTTGTCATCCTCATCCTGGACGAGATCTATGGCTCCGTGGCTGCCTGGCTCACAGAGCTGGAGATTCCAAAGACAGAGACCGGCTTTGAGGAGCGTCTGATTCTGAAGGCCTTCCTCCTAAAGTTTATGAATGCTTATGCCCCCATTTTCTATGTAGCTTTCTTCAAAGGAAGGTTTGCAGGCCGGCCTGGAGAATACGTTTATGTTTTCAACCAGTATCGCATGGAAGAGtgtgccCCTGGTGGTTGTCTTATTGAGTTATGTATTCAGCTCAGCATCATCATGTTGGgaaaacagctcattcagaacAATATCTTTGAGATTGGCGTCCCGAAGCTGAAGAAGCTGTTCCGCTCCCTGAAGGAAAAGAAGCGAGCTCCTGAAGTGCATGTGGAACAGACAGGTCGTACTCTGCGTCAGTGGCACCTGGACTATGACCTAGAGCCGTTTGATGGCCTCACACCTGAATACATGGAGATGATCATCCAGTTTGGCTTTGTCTCCCTCTTTGTGGCCTCCTTTCCTCTGGCTCCtctttttgctctcttgaaCAACGTCATTGAGATCCGACTGGACGCTAAGAAGTTCGTCACTGAGCTACGCAGACCGGATGCCGTGAGAGCACAAGATATTGGAATCTGGTACAATATACTAAACGGCTTGGGCAAGTTTTCAGTTCTCATCAATgCTTTTGTCATCTCCTTTACATCAGACTTCATCCCACGACTGGTTTATCAGTACATGTACAGTGAGACTGGCACCATGCATGGCTTCATCGACCACACATTGTCTTACTTCAATGTCAGTGATTTTCAACCAGGCACAGCACCTGCTGGCTCCACTATCACAGTGTGCCGGTATAAGGATTACAGGGAGCCACCCTGGTCTTCACAGCCCTACCAGTTCTCCAAACAGTATTGGTCAATCCTAGCAGCTCGACTGGGATTCGTAATACTGTTCCAGAACCTGGTAATGTTCTTAGGCCTCCTGGTGGCCTGGGTGATCCCAGATGTGCCCAAGAACATCAGCGAGCAGATTAAGAGGGAAAAGACCCTGCTTGTAGATGTCTTCatgaaggaggaaaaggagaagCTTCAGCTCATCCACAGCCTTTTCTCAAAAGAATCAGGCCAGTTGCTGCTGCAGGAGCCCAGGAAGCAGGTGCAGACAGTCTCTGAGCCCCAGGCTCCCTTGCCCAACCTCACCCAAGCTGAAGATACCACTGCTGCTTCCCGTCCCCGTACCCGCGCACGTGCAGCCAGCTTTAGCCAATTTACCCGCCAGGCCTCCATGTCGCCCCATCATGATGGGGGCACACAGACAGCAGTGTGAACTGGGCAAGGAGGGGTCGGCAAGAGGGGTTAGCCGGCCATGAGATCTTCAGAGTGCCCATACTCAGAATGGAGGACTAGCAGAGGACAGAGGGTAGGGCTAAGCTTTCCACTGAGTTCTTGAGGTGAATTAGAACCGTCCATACAGTGGTTCTCACTGGAGCTAACGCAAGAGAGATCATTATATATCTATCTCTGTACTGTATGTCTGAGCATATGTCCACAGGCAGCGTGTTTTGATTGCTTTTAAAGCTGTGATGTATCCACACAGTCCGCAGAGGCGATCTCATCCTGGCCTCTAAGCCAAGGCTTCATAGGACCGCTTGCCATAGGACCTCATCCCATGCACAGCATAACTGGTTGAGAGCACAGACACTGGAATGAAAGACCAGGAATCTCATCCATGGGGCCTCTcgcacatttttcccccatctGTTCTTAAGCTAAGAGGAAGATATTTTTTGACAGGACTCAAAAACTAATGTTCACATCTGGTCCATGCTTACTGAACGATTTGTGAAACTGCACAAACCCAAGCTGCTTTGCGAATTTTATGAAATGTAGCGTATCACAGCAAATAATTATTCCCTTTCATTTTCTCAGGTAACACCATCACTGTaggctttatttgtttatctgaaTAATGTTAAATCTCTTTGTTTATTAGAGCCTATGAAACTTGTTTGTTAATAAGGGATAAGGAACATGAACTACATTATTGCACAAATTGTATTGTACAAAAACAATACATAAAACTTGATGGGTGTCAAAATTGTTACAGATCTCTTTCTTTAAAGATGGAACTCTTCACAAAGTGAATTGTTTAGATTTGTCATAAGTAAACTAGATGATAAGGCTGTCTCCGAGGTATGTGTTACCAGGTAAGGTTTTGTTTCTGCTTAGGGTCAACTAATAAGCCGTTTCACTTTTACAACTCATTATTTaagattattgttttttttgtaaatcaacTTCTGTTGTATGTATTAGTTGCAATGTCTCACTTGGAAAAGGCCAGTCAATAGTGATTATGCACTGAGAAGTCAGATACATGAGCCAAGATAATGTCAACCATATGTAGAGCATATACAGCTGGATGTATGGAATTGAAATCTCAATCTATATTAAAGTTTAGACATTTATCTAATCTCTTCTAAGTTCTTACAGATCATGTGTAGTCTCCTTTTGATCCAATATTCAAAGTCTGCAGTTTAGCATTTCTTCCATGTTTCCATGACTATCGCACAGTTCTCTGCTTTTTGGTGAAACCCATTATTCACCCACAAGATTGGACACCATCAGCCAGGGACTAAATAGCACATAGTGGGAGGCTGAGAAAGGAAGACcaacatctgtctgtctcactctcttttcctCAAATGACTCATTGGGTTTCTATGTTGGCAGTGCACTGTGTTCTCTTGCTCTACGGGCATGGACAGTGCCTGCCTGACTGTATTCTTGACTGTCCATAGTAGGGCAAGAGATCATTTTCCCcttttataaattatttgtcAATTTAAGCAAACTTAATTTTCATATCACTTCATGCAgcaatgtgaatttttttattcatcaatCAGTTTCCATAGCTAAGAGAAAGAACTGTATACATGAGTGCCATTCTATGACTGTCATACAATAGTTTCAAATTACAACAAACCAAGATGGTTGTGAAGAAATGACCCTGTACATAAAAGAATGATTTATGTATGATTTGGTAGCTATGAAGGCATtaaatttattcaatttattcaaTTTGTACActtttaactagctagctatgcCATCTAAACATATTGTAATGGTATGCTTGCACAGAAGTAATTATTGCATTGAACTCATTTACTGAAAGTATATTTAACTGGAAGAGAGCATTGTGGGTAACCAGAGACATAAAACAGGTTTGTATGATAGCTGTGGCATTAATCATAATTTCCTGCCACAAGTCCCGGGCACTGCTCAAATATATTTTGTTGATGACACACATAATCTTTCTGCAAACTCATGTCATTATATGAGAATGTGATACAGTGAAAGGACTGACTTCACCCTGTAATTATAATCTTTTCTCTCTACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU336874 lncRNA downstream 6361 17901025 ~ 17901267 (-) True G284352
TU336869 lncRNA downstream 9398 17895335 ~ 17898230 (-) True G284349
TU336843 lncRNA downstream 56734 17850457 ~ 17850894 (-) True G284323
TU336815 lncRNA downstream 116865 17790534 ~ 17790763 (-) True G284295
TU336814 lncRNA downstream 142699 17762031 ~ 17764929 (-) True G284294
TU337033 lncRNA upstream 56490 18027734 ~ 18029915 (-) False ahcyl2b
TU337055 lncRNA upstream 117410 18088654 ~ 18088942 (-) True G284520
TU337057 lncRNA upstream 120973 18092217 ~ 18092539 (-) True trnaa-ugc_14
TU337106 lncRNA upstream 209135 18180379 ~ 18184992 (-) True G284559
TU337140 lncRNA upstream 375209 18346453 ~ 18346836 (-) True G284590
XM_026923555.2 mRNA downstream 98339 17795884 ~ 17809289 (-) True gnsa
XM_026922984.2 mRNA downstream 291379 17611890 ~ 17616249 (-) True LOC113531978
XM_026922642.2 mRNA downstream 313311 17591120 ~ 17594317 (-) True ckap4
XM_034313293.1 mRNA downstream 401131 17498388 ~ 17506497 (-) True LOC113531974
XM_034313292.1 mRNA downstream 402174 17498388 ~ 17505454 (-) False LOC113531974
XM_026923556.2 mRNA upstream 7519 17978763 ~ 17988280 (-) True LOC113532261
XM_026923724.2 mRNA upstream 19385 17990629 ~ 18023472 (-) False strip2
XM_026923721.2 mRNA upstream 19385 17990629 ~ 18023472 (-) True strip2
XM_026923723.2 mRNA upstream 19385 17990629 ~ 18021740 (-) False strip2
XM_026923722.2 mRNA upstream 19385 17990629 ~ 18016794 (-) False strip2
trnar-ccg_5 other downstream 803991 17103565 ~ 17103637 (-) True trnar-ccg_5
TU336422 other downstream 942741 16958524 ~ 16964887 (-) True phf21b
TU335292 other downstream 2730015 15174348 ~ 15177613 (-) False LOC113531972
XR_003403346.2 other downstream 5326565 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 6247301 11657890 ~ 11660327 (-) True G281092
TU337036 other upstream 7541 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 7541 17978785 ~ 17980246 (-) False LOC113532261
XR_004580005.1 other upstream 99503 18070747 ~ 18082361 (-) False tmem209
trnaa-ugc_10 other upstream 111994 18083238 ~ 18083309 (-) True trnaa-ugc_10
trnaa-ugc_11 other upstream 112539 18083783 ~ 18083854 (-) True trnaa-ugc_11

Expression Profile