RNA id: XM_026923617.2


Basic Information

Item Value
RNA id XM_026923617.2
length 2044
RNA type mRNA
GC content 0.44
exon number 5
gene id apex1
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 12430448 ~ 12435191 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atattttttttagtcagGCAAACATTTGGGCAGCACCATGCTGGGGAACATGTGCAGCACTTTGAGCACAAAGCTTTAGAGCTGAGCGGAACAGAGAACTCCTGACCTGTAGTAGTTTTTATTAAGTGTGGCTGTGTTTGGTGTGCGTGTGCGTCTGTGTGCGCGTGCTGTGTGGAGTCTCAGAAACATGCCGAAGAGAGCCAAGAAAAACGAGGAGGCTTCTGCAGAAGCAGGCAACGACAACGGAACAGAAACAAAGAAATCGAAGAAGGCAAAGGAACCCGAAGCCCCAGTTTTATATGAAGATCCCCCAGATAAGCTGACCAGCAAGGATGGCCAGCCAGCCAACTTGAAGATAACCTCTTGGAATGTAGATGGCATTCGTGCCTGGGTTAAGAAGAATGGGCTTGATTGGGTGCGTCAAGAGGCTCCAGATGTGCTTTGTCTTCAGGAGACAAAGTGTGCTGAGAGAGCTTTACCAGCAGATATCACCTCTATGCCTGAGTATCCATATAAGTATTGGGCAGGCTCAGAAGATAAAGAGGGTTACAGTGGAGTGGCCATGCTGTGCAAGACTGAGCCTCTTAAAGTCACTTATGGCATTGGAAAAGAGGAGCATGACAAAGAGGGCCGTGTGATCACTGCCGAGTTCCCTTCCTTCTTCCTGGTTACTGCATACGTGCCCAATGCTGGGCGTGGCCTGGTTCGCCTCGACTACCGCAAAACGTGGGACGTAGACTTCCGTGCGTACCTGAGCAACCTGGACAGTCGTAAGCCCCTGGTGCTGTGTGGTGACCTCAACGTGGCCCACCAGGAGATTGACCTGAAGAACCCCAAAGGCAACCGTAAGAATGCAGGCTTCACTCCTGAAGAGCGCGAGGGTTTCAGCCAGCTTCTGGCAGCCGGCTTTACCGATAGCTTCCGTGAGCTGTATCCGGAGCAGACCAACGCCTACACCTTCTGGACGTACATGATGAACGCACGGGCCAAGAACGTGGGCTGGCGCCTGGACTACTTCGTGCTCTCAGCTGCTTTGCTCCCAAGCTTGTGTGACAGCAAGATTCGTAATACAGCCATGGGGAGTGATCACTGCCCCATCACTCTCCATCTGGCTGTATAGACATATGACCACTTCTGTCAGTATGGGTTCGCATTCACTACTTCCTAAGAGCAGTGGggcttttgctttttttctaaCTTGTGTAGATTGAGGCAAACTCTTTCAATATCTATATCTCtttcctgaaatattttacaagTTAAAAAGCCCAGACCTATAATTAGGTCATTAGAGCTAAGAGGGAACCGAAGGTTGTTTTGATTCACTGTTTGTAGTTTTGTTGCAGATATTATTcccaagatgttttttttcttgttctgtgTTAGTTCTAATATTCTCTCAAAGAAGCCTGACCGCAAAGTATGGCGTATGATGGAGACTTTGATCTTGTGTATTTTTCTGACATATCTTTCTTCTGTCATTCCATGAAGCAGATGTAATGACAACATTCTAGTCATGTGAAATGGAAACAAAAGCAGATCCCTTGTACCCCAGCTGAACAACAAAGCAGACTTCATGTTGCAACTGGATCAATTTTCACAAAAGTAATGAGACATTACCACCAAATTTTGaatttcaaaaaacaaacaaaaaaaaaaaaaacactagtgaTTCTAGCACTTTATAGCTCTTATAGCGCTTCActttatagaaataattaaGAAAGACCCTAGGGTTAGGgtctaactctaaccctaaccctagtgtctaaccctaaccctagcaaGACAAGCTTTCAGACAAATGACTTTGTATCGCTGCATTGTAATACTGTCAGAAACAACAGAAGGTGATTGATAAGAGAGAAAGCTCACTTGGGGTTCAGTTTCAGGTATGAACTAGTTAAGATTTGTTAGGTTCATTTACCATCAATTGACAGTTGCTTAGTAATCATCTTCACTGTGCTTCCTACCTTTATTGCAAAACAGTtaggttatttttttattcatgtctaTTGAAACAATAAATTGCTGAACAAAGGCA

Function

GO:

id name namespace
GO:0010628 positive regulation of gene expression biological_process
GO:0080111 DNA demethylation biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0001947 heart looping biological_process
GO:0060047 heart contraction biological_process
GO:0006281 DNA repair biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016607 nuclear speck cellular_component
GO:0005730 nucleolus cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K10771 APEX1; AP endonuclease 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333597 lncRNA downstream 61183 12368959 ~ 12369265 (-) True G281486
TU333565 lncRNA downstream 176293 12251314 ~ 12254155 (-) True G281455
TU333459 lncRNA downstream 336389 12093857 ~ 12094059 (-) True G281373
TU333441 lncRNA downstream 394086 12033096 ~ 12036362 (-) True G281362
TU333155 lncRNA downstream 677556 11739730 ~ 11752892 (-) False dusp16
TU333624 lncRNA upstream 22372 12457563 ~ 12459092 (-) True G281510
TU333645 lncRNA upstream 41073 12476264 ~ 12477629 (-) True G281527
XR_003403338.2 lncRNA upstream 711091 13146282 ~ 13147358 (-) True LOC113532391
TU334183 lncRNA upstream 733484 13168675 ~ 13210493 (-) True G281964
TU334201 lncRNA upstream 823961 13259152 ~ 13285718 (-) True G281981
XM_026923527.2 mRNA downstream 15374 12411859 ~ 12415074 (-) True LOC113532240
XM_026922708.2 mRNA downstream 20918 12402179 ~ 12409530 (-) True LOC113531803
XM_034313232.1 mRNA downstream 35927 12375791 ~ 12394521 (-) False mapk11
XM_026923092.2 mRNA downstream 35927 12375791 ~ 12394521 (-) True mapk11
XM_026923091.2 mRNA downstream 56064 12369609 ~ 12374384 (-) True mapk12b
XM_026923619.2 mRNA upstream 10707 12445898 ~ 12451585 (-) True si:ch211-214j24.10
XM_026923776.2 mRNA upstream 53204 12488395 ~ 12517676 (-) True shisal1a
XM_026923775.2 mRNA upstream 60848 12496039 ~ 12517683 (-) False shisal1a
XM_026923777.2 mRNA upstream 60848 12496039 ~ 12517676 (-) False shisal1a
XM_026923774.2 mRNA upstream 60848 12496039 ~ 12517676 (-) False shisal1a
TU333129 other downstream 770121 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 842424 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 1171056 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 1423305 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU332243 other downstream 2134327 10269757 ~ 10296121 (-) False LOC113532274
XR_003403346.2 other upstream 145732 12580923 ~ 12581063 (-) True LOC113532438
TU335292 other upstream 2739157 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 4523333 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 4668374 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 5543594 17978785 ~ 17980246 (-) False LOC113532261

Expression Profile