RNA id: XM_026923621.2


Basic Information

Item Value
RNA id XM_026923621.2
length 4725
RNA type mRNA
GC content 0.46
exon number 15
gene id LOC113532299
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 17119346 ~ 17193239 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAGCCGGATCCCAAGCTTTCTCCAGGTTTTAGTGGAAGCGGCCCGGAGGGAGGGAAAGGAGACAAGGATGTTCAGTTAGCAGGACTGGAGCAATCTGCCTAGTAGTGAAAGATCAGTGGAAGGCAACGCAAAATTAGTGCAATCGAGGATTATTTTGCATGCGGCTCGTGGATGATGAGTGGTGCTATTCCCCAAGCCTGCTTTTTGATGCCAAACTCGAAGATAGCGCATTGTTTACAATGACAGTGCCATGCACTACCTGGTGAACATCTACTGCCTACACAGAGGTCTCTCAGCCTCCTGATCGCCCCCTCTCTGGCTCCAGAGGATGCTGGGAATGTGTCGTGGGCGCAGGAAGTTCCTGGCTGCATCCGTCGCCTTGCTTTTTATTCCAGGCCTCACCTGGCTATATCTGTCGAACGTCACAGTGAAGCCACTGCCTCTCTCCCCACTGGAGCCTCAATCCTCCACACTGGCCCTGGAGCTTCGGGTTCGAGAGGTAGAGGAGGAAAACCGAGCGCTCAGAAGAGAGATTAGCCAGCTGCCCAGGAGTCCTACCCACGGCAACCAGCATTCCCATCACCACAGCAGCGTACACCATGGCAACCAGTCCCAGCTTCACTCCACTGAAGAGGGTACCGGTGATAGTGAAGCTCAGAAAGCACTCTCTAAAGTCAACGGCTCCAGCTGTGTCCAGCAACCTGCTGTGGATAAATGTGAGACCATTCATGTTGCCATCGTGTGCGCGGGGTACAACGCAAGCCGAGATGTGGTGACGCTGGTCAAGTCTGTGCTTTTTCACCGtcGGAACCCTCTTCACTTCCACTTCATCACAGACTCCATCGCCAAGCAGATCCTAGCGTCCCTCTTCCACACTTGGATGGTGCCAGCTGTCCGAGTGGACTTTTACGATGCAGATGAATTGAAGtcTGAGGTGTCATGGATCCCCAACAAACATTACTCAGGTATCTACGGCCTGATGAAGCTGGTTCTGACCAAGACGCTGCCATCAGACCTGCAGAAAGTCATCGTTCTAGATACCGACATCACCTTTGCCACAGACATCGCTGAGCTGTGGGCTGTCTTTCACAAATTCAAAGgtcAGCAGGTGCTTGGGCTGGTGGAGAATCAGAGTGACTGGTATTTGGGGAACCTGTGGAAGAACCATCGACCGTGGCCTGCTCTAGGTCGAGGCTTCAACACTGgtgtgatTCTCCTGCTGTTAGATCGTTTGAGGAAGCTCAGATGGGAGCAGATGTGGAGActgacagcagagagagagctgaTGAGCATGCTGTCTACATCGCTAGCagatcagGACATCTTTAACGCTGTGATCAAACAGAACCCCTTCCTGGTGCACCAGCTGCCCTGCTTCTGGAATGTCCAGCTGTCTGATCACACACGCTCGGAGAAGTGCTATAGAGATGTGTCCGACCTCAAGGTGATCCACTGGAACTCGCCTAAAAAGCTGCGGGTGAAGAACAAGCATGTGGAGTTTTTTAGGAACCTTTATCTGACCTTCCTGGAGTATGATGGCAATCTGCTGAGGAGGGAGCTCTTTGGCTGTCCAAGTGAAACTGACCACAATAGTGAGAACCTCCAGAAGACTCTACTGGAGCTTGATGAGGACGATCCGTGTTATGAGTTCAGACGAGAGCGTTTCACTGTGCATCGCACACACCTCTACTTCCTGCACTATGAGTATGAGCCCAGCGCAGACCAGACTGATGTTACGCTCGTGGCCCAGCTCTCCATGGACAGGCTGCAGATGCTAGAGGCCATCTGTAAACACTGGGAAGGACCCATCAGTCTGGCTCTCTACCTGTCTGACGCTGAGGCACAGCAATTCCTGCGCTATGCCCAGGGCTCTGAGGTGCTCATGAGCAGAAGCAACGTGGGATACCATATTGTCTACAAAGAGGGCCAGTTCTACCCCGTCAACCTGCTGCGCAACGTTGCCATGAAACAAGTCAACACACCCTACATGTTCCTGTCTGACATTGACTTCCTGCCCATGTACGGACTCTACGAATACCTCAGGAAGTCTGTAGTACAGCTGGACATGGCGCACACTAAAAAGGCTCTGGTGGTGCCTGCATTTGAGACGCTGCGTTACCGGCTGTCCTTTCCCAAATCCAAGGCTGAGCTTCTGTCCCAGCTGGACATGGGCACTCTCTTCACCTTCAGGTATCATGTGTGGACAAAAGGTCACGCTCCAACTAACTTTGCAAAATGGCGGACAGCCACAACGCCATACAGAGTGCAGTGGGAGGCCGACTTTGAACCTTATGTGATGGTGAGGAGGGACAGTCCAGAATATGACCGCAGGTTTGTGGGATTCGGTTGGAACAAAGTGGCCCACATTATGGAGCTGGATGCACAGGAATATGAGTTTGTGGTTCTGCCCAATGCCTATATGATCCACATGCCTCATGCGCCCAGCTTCGACATCACCAAGTTCCGCTCCAATAAACAATACCGCGCTTGCCTCAAGACTCTCAAAGAAGAGTTTCAGCAGAACATGTCACGCCGCTATGGATTTGCTGCCCTCAAATACATGACGGCAGACAACAACAGCTAGCAAAGTCACCTTtatgtttttcacttttcaggTGGTTCCATTAGATATCACATAGGAAAGCAGTGCAATGGGTCTGTAATGGACCCAACAACGTGATAATGGACCCTCAGTGTAAGTCAGAGGAGTGTGTTCTTCCATTCTATCATTCAGGAAGATGCCATGGTGACCATTTTTTCACTGCTTTGGAAACAGCAATAGTGCAGTGTGTCAGCTATTGGATGTCACGGCATTCTTCTGGACGAATTCAGTCCACCCAGCTTCCCAGATTGACCTGCTCTATGAACAGGAATTGAGACGTTATTAACCATTGGGAAAGCAGAAAATTTTAATTGAACATGACTGAATATGACCAGAGGAAATGCCACTGCAGAGACTGAGCTGTGGTTTGTTGGACTATAATCTACTGATGCCTAGAAGCtgaatttagcatttttgtgtgtgctttcaGTCATAGGGCGATGTTTAGCTGTACTGGATCTCAGACTAATGACACATTAGCTCTTAGACTAAGCAACATAGAGACACAGAAAGGGATCCCCAGTCATTTTTGTAAGGAAAGTGATCACTGTAGAGATAAGgttgattaataattaataatatgatGTTTACATCTTTTACAGAATAAAcagtgttgtttaaaaaaaaaaaaaaaagaaaaaaagctaaatgtCTTAGATTTTATAGCACCTTTGTGGAATCACTTTTCCTATTAGAGCTCAGTAAGGACCCAGGTGGGCTAAAGGTTGCACCCAATACGTAGTAACTGTTCTGTTTATGGACAACGTCAGGCTATCAGCATTGACAATCCAGACACAGACAAAAGCCCCAAATCATGTATATGTAAATCTGAGTcacttttttcagcattttactgtatgttttcatATTTCTGTGCTCACTATGATATCAATGTTTTGGTGTCATTGTTCTATGTaagtattacatttacatttcttgcAGCTAACAGAAATGCACTAACTCCAAGGTTAAAAGCTGacggtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgggggatGTACAAATAATTGTGCACCATTTGCCAGGGTTagtttgcactttttttcctctaacCCTAAGATGAAGGTCTGGGTATCTCATAATGTGATGTGGAAATTCCTTCATTTATGTTGtgtttgaatgaaagaaaaCTTAATTCACACAACCACAAATCTGATAAATCAAGAATAATAATGGGATTGACCATGAAAATGGACATTTGTATTGATGGACAAATCCTAGTCCCATGTATATGGGCATGGAATTTTGCTGACATCTTCAGCAGCTGTTGAATCCTCTTACTGGTTTACAGATCACTTGTATATATGTACCTTGTAGAAACAGTGAAATGGTTCCACACGGATGActttttcactgttgatctgctgctcaaagTTTTTGAACGCAACTGTGCTAACGGCAGcaggaaaggaaaacaaaaaaaggaaacaaattgcatttttaatttctaatttcaaaattaccattaacattatttgtacaGTGTTCGATTTGATACTTCATTGTAGATCTGTTTAATCTCTTTTGTTTTAGGTCAAGATTTCCAggcttttttgtcttttggtgaAAGCAAAAGcacgtttttttgtttgtttgtttgtttgtttgttttgactgTATTCGGCCAGAATTTTTGGTGGCCAAAATGTTggtgcatccctaataaatatagttaacttcAGTTAACTATATACTTGTTTAATATACTTGCTAAGTCAAATTGCTCTTTGTGTACCTTGACACAGAGAAAGCAAGGATGCCATGTCAATCAAGTTGAGACGACAGCGGCACCCGTCTCTGGGCGGAGACGAATTCtctttggcatatttttgagtgcTGCGTAGTACTAGtatactctgatgttaaaatgcagagctcctacacaaaatgtgtgaaaGTTGGCAGGTCTGAACTACTAGCATGGCTGCTGAAAAGGTAatcaaacatactgtatgtttacttCAGTTTTTAATGCGTGCAGACAgggtttgagtgtgtgtgtgtgtgtgtgtgagaatgtgtaaGTGTGGCTAAACTGATGTGTCCAAGACTGACAGATTTTCTGCtacctgaataaaaaaaaattgtggaaaaGAA

Function

GO:

id name namespace
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K09668 LARGE; glycosyltransferase-like protein LARGE

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU336452 lncRNA downstream 76066 17041627 ~ 17043280 (-) True G284003
TU336181 lncRNA downstream 269584 16838535 ~ 16849762 (-) False LOC113532230
XR_004579992.1 lncRNA downstream 499628 16618712 ~ 16619718 (-) True LOC117599589
TU335948 lncRNA downstream 669580 16448439 ~ 16449766 (-) True G283546
TU336615 lncRNA upstream 313637 17506876 ~ 17507145 (-) True G284131
TU336618 lncRNA upstream 320371 17513610 ~ 17515240 (-) True G284134
TU336619 lncRNA upstream 328187 17521426 ~ 17523643 (-) True G284135
TU336633 lncRNA upstream 355093 17548332 ~ 17553258 (-) True G284146
TU336631 lncRNA upstream 365168 17558407 ~ 17564955 (-) True G284145
XM_026923216.2 mRNA downstream 20017 17062768 ~ 17099329 (-) True kiaa0930
XM_026922958.2 mRNA downstream 91481 16958512 ~ 17027865 (-) False phf21b
XM_026922955.2 mRNA downstream 91481 16958512 ~ 17027865 (-) False phf21b
XM_026922957.2 mRNA downstream 92470 16958512 ~ 17026876 (-) False phf21b
XM_026923499.2 mRNA downstream 265951 16839401 ~ 16853395 (-) True LOC113532230
XM_026922628.2 mRNA upstream 68451 17261690 ~ 17316582 (-) True LOC113531742
XM_026923436.2 mRNA upstream 241203 17434442 ~ 17439078 (-) True sapcd1
XM_026923395.2 mRNA upstream 269716 17462955 ~ 17480834 (-) True slc37a3
XM_034313145.1 mRNA upstream 291319 17484558 ~ 17485421 (-) True LOC117599538
XM_034312988.1 mRNA upstream 293572 17486811 ~ 17494787 (-) True LOC117599443
trnar-ccg_5 other downstream 15709 17103565 ~ 17103637 (-) True trnar-ccg_5
TU336422 other downstream 154459 16958524 ~ 16964887 (-) True phf21b
TU335292 other downstream 1941733 15174348 ~ 15177613 (-) False LOC113531972
XR_003403346.2 other downstream 4538283 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 5459019 11657890 ~ 11660327 (-) True G281092
TU337036 other upstream 785546 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 785546 17978785 ~ 17980246 (-) False LOC113532261
XR_004580005.1 other upstream 877508 18070747 ~ 18082361 (-) False tmem209
trnaa-ugc_10 other upstream 889999 18083238 ~ 18083309 (-) True trnaa-ugc_10
trnaa-ugc_11 other upstream 890544 18083783 ~ 18083854 (-) True trnaa-ugc_11

Expression Profile