RNA id: XM_026923665.2


Basic Information

Item Value
RNA id XM_026923665.2
length 2482
RNA type mRNA
GC content 0.46
exon number 8
gene id tspan9b
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 8358310 ~ 8388357 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGATCATAAGAGTTTGAGATCAGTCGAGGCTTATTTGCATTTCTATGACCTGAATTTTTACAACCATATGAACATGAGAAGCTGAATTTCTATGGAATAGATTTTTGAGGAGGGACCACTCACACTCCTGTTAGCAGATCCATGAGAggaggcgagagagagagagaaagagagagagagagagtagagcaGAGCACATTCAGATGCAGAGAGCGAGGTGAGGACGGTGCATTAGTTGTGCAGAGGAGAGCCGAGGGAGCACACTGAGAAGTGAAAAGCAGATCATTTCTAcgagagaagaaaggaaagatgCTCTATAGCTGCTTTTTTGGAGAATAAGAGTAGGAGGATGCAGGGCTGTTGATTGGGCGCTTCAGACCGAGTGTAACTTATGAGATTTCCAGGATGTCTTTTGGAGTGTATGGAGCAATTTGACGCTATGCACTGCGTCTTCTACATGATGCATGCGTGAGAGTTTGATTCACGATGGAGCGCTGTGAGAGCAGCGTGGCCGTGGCCGTCCAGCCGAGTCCGTCATTGGACAGCGCCGAGCTGGAGTTCGCCCAGGCTGTCCGCCGCGGACACCGCCTCGCTGTGGGCGCTTTCTACGGCTCCCGTCGCTCGAAGGTTCAGACTCAGACAAGTCCCGAGGAGAGCATAGAGGGCACGGCGGCTGTGGGCGAGAAGCCAGCGAGGCAGAGTGGGGCATGTGGAGGGAAGTTTCTTGTTTTTTACCTGGActtgtcttttgttttcttgttagaGCTGGAGAAGCTGAGGATGGCGCGCGGGTGCCTGTGCTGTGTCAAATACATGATGTTCCTCTTCAACCTGCTCTTCTGGctGTCAGGCTGTGGTCTGCTGGGAGTAGGGATCTGGCTCTCCATGTCTCAGGGGAGCTTTGccactttctctccctccttccccTCGCTCTCAGCCGCCAATCTGGTAATCATCCTGGGCTCCATCGTCATGGTGACGGGCTTCCTGGGCTGCATGGGCGCCATCAAGGAGAACAAGTGCCTGTTGCTGAGTtTCTTCATTGTCCTGTTGATAATTCTGCTGGCAGAGTTGATTCTGCTCATCCTCTTCTTTGTGTATACAGACAAGGTGAGTCAGAATGCACAGCAGGACCTGAAGGAGGGTCTGCAACTGTACAACACTGACAACAACATCGGCCTGCGCAATGCATGGAACATCATCCagtctgagtggcaGTGCTGTGGCGTAACTGGGCACACAGACTGGCACGATGCCCTGCCTGACAAGACAGTCCCAGACCGATGTTGTCAGGAGCATTATAAAGAGTGTGGGCGCAATGCAAGTAATGTCTTCTGGTCTCAGGGCTGCTACGAGAAGGTTGTGGACTGGCTGGATGATAACAAACACCTGTTGGGCACTATTGCTATGTGTGTGCTGGTCAtacagCTCCTCGGCATGGCGTTTTCCATGACCCTGTACCAGCAGATTCACAGAGCGGGGAAGAAGTACAGTGCCTAAAGGAAAGGACTTAAACCTCATTAACAAAAAATCAACAGCAGCCCAAAAACCTTTAGTCCATACTGCTTCCTGTGTCTTTCCATTTCTGGACATTACCAAGAATTATAGACTATGTGTCTATACATTAAATCCAGTAAGATTTTGTAGTGtatatgtgaaaatatatttccaAACCCATGTTAAGGAATTGTTATAGGCAGAAATAATATTTAGATGGAAGCAGAGGCAAATGAAATTTTTTGGAGAAGAAATTTTGGCACCTCTTGTATAGCAGGATTAATAAGCCACCATGGTTCCGCTGTTTGTATAATGCATTCCCTCATCGAGGAAAAGATTAGTACTCACTGCTGAAGACTGCCTATTTGTACAATAATGtaccttctctttctctcacttgcTCTCACACATGTACATTGTTTCTcatatattgattataaaagCATGTAACGCAGATCTCTTTCAGGAGCTAACTGTACATTGTTCACTTGCCCTGTTTATCCTATAAATAGATGAATATAATCCTGTTTATCATGCCggttgtatgtgtgtatgtgtgtacattcTGTGTGGGCAGAGAAAAGTTTTCCACCAAACTAACATGTTGCCTTTGGGCCACTGTGGATCAGTTTACTCTTTCCTTTttgctgtctttttctgtctggtTCTTTTGTTCTAATGTTCACTGATCTTTTCAAAGTTCCACCTCCCCAGCCGAGGTGAATGAGCCATCCCAGTGCAGATTATGAGATTCAGAGAGAGAACGATAAGCGCAGAGATCAATAAAGGACTAGCATCAGAAGAACAAACAGAACAGCACTTCAAAGTCTGGTTTTGGAAATAGTCCACGTTTATAAAGCTTTTACACATTGAGccataaatttttttaatattttccaacTGTCCCTCGTGTGCTTGTGATTGTTTTAAGTGTGATTTATTCGATATTATAATCAAGTCACGATCTAATATATTCAAACTccc

Function

GO: NA

KEGG:

id description
K17350 TSPAN9; tetraspanin-9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330657 lncRNA downstream 118634 8238974 ~ 8239676 (-) True G278920
TU330636 lncRNA downstream 141017 8217013 ~ 8217293 (-) True G278911
TU330235 lncRNA downstream 390889 7966819 ~ 7967421 (-) False avpr1ab
TU330151 lncRNA downstream 479293 7796835 ~ 7879017 (-) True G278520
XR_004579996.1 lncRNA downstream 824029 7530784 ~ 7534281 (-) True LOC117599592
TU330707 lncRNA upstream 16992 8389498 ~ 8390559 (-) True G278963
TU330836 lncRNA upstream 239612 8612118 ~ 8612342 (-) True G279064
XR_004579873.1 lncRNA upstream 325924 8698430 ~ 8698791 (-) True LOC117599455
TU331172 lncRNA upstream 821110 9193616 ~ 9194003 (-) True G279382
TU331392 lncRNA upstream 963830 9336336 ~ 9337530 (-) True G279588
XM_026922634.2 mRNA downstream 23821 8322995 ~ 8334489 (-) False dmtf1
XM_026922633.2 mRNA downstream 23821 8322995 ~ 8334489 (-) True dmtf1
XM_026922676.2 mRNA downstream 46641 8301479 ~ 8311669 (-) True dclre1c
XM_026922672.2 mRNA downstream 67637 8283796 ~ 8290673 (-) True cdnf
XM_026923514.2 mRNA downstream 81436 8253485 ~ 8276874 (-) False shank3b
XM_034313192.1 mRNA upstream 18172 8390678 ~ 8426367 (-) True mical3b
XM_034313193.1 mRNA upstream 18173 8390679 ~ 8426358 (-) False mical3b
XM_026922835.2 mRNA upstream 18174 8390680 ~ 8426356 (-) False mical3b
XM_026922838.2 mRNA upstream 18174 8390680 ~ 8426355 (-) False mical3b
XM_026922837.2 mRNA upstream 18174 8390680 ~ 8426355 (-) False mical3b
TU330637 other downstream 138630 8218561 ~ 8219680 (-) True G278912
TU330291 other downstream 290233 8053088 ~ 8068077 (-) True G278634
trnal-aag_11 other downstream 764502 7593727 ~ 7593808 (-) True trnal-aag_11
trnam-cau_46 other downstream 2255163 6103076 ~ 6103147 (-) True trnam-cau_46
XR_003403345.2 other downstream 2325117 6033029 ~ 6033193 (-) True LOC113532437
XR_003403340.2 other upstream 436714 8809220 ~ 8809338 (-) True LOC113532431
TU331209 other upstream 834845 9207351 ~ 9208563 (-) True G279415
trnay-gua_2 other upstream 1250027 9622533 ~ 9622619 (-) True trnay-gua_2
TU332243 other upstream 1897251 10269757 ~ 10296121 (-) False LOC113532274
XR_004579975.1 other upstream 2622599 10995105 ~ 11007143 (-) True si:ch211-51e12.7

Expression Profile