RNA id: XM_026923669.2


Basic Information

Item Value
RNA id XM_026923669.2
length 4237
RNA type mRNA
GC content 0.45
exon number 19
gene id prkcq
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 13621297 ~ 13648197 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCCAGCTCTGcacatgtgcatgtgcactCAGCCTTCACAAACTCACTCAGCCTCGCATAGCGAAGCACAAGTTCACCTGCTTTCCAAAATACGGGGAGATTTTTGGAGAACATTCCTGTTGGCTTCTCTGCAGATAAAGAAAGGTTGATCGAGATCTGGGGAACTAATCATCTGTGCTCACACCATCTTTCTCTACACAACTCTACCCAAAACAGAAGGGCACAGAGGCGGATCAGAAACTGACATTTcctaaacctttacacacataaacactcccacacacactcccagtcCAGCAGAAGAGTTACTCTTGGAGGGGTCGCTGTACCAAGCCAGTTCTCTGAGCTCAGAAATACACACGTGCACAGatgctcccacacacactcttgtggGTGCTACTGTATTAAAACTTCATCTTCTGCTGGAATCTTTCTGTGTTACATAAATCCAGGAATGGACTTTACTGGCATTGTCAAGATTATCTGAAGGGCACTGCTGCGATCAGCCCTGCTGAGGGAATCTGACATAATACACCGGCGCTGAAGTTTAATGCTAAAGAgaagctgagtgtgtgagatcaTGTCTCCGTTTCTGAGGATCGGCTTCTCCAGCTTTGAGATGGACCCGGGACTTGCGTACCATGAAGAGGTGCTCAACCCGTATTGTGCTGTCTACATGAAGGAGGCTGTAGAGACAgAAAAGGGTCAGGTGTATAAGCAGAAACGGCCCACCATGTACCCTCCATGGAGCAGCACATTCGATGCCCATGTTCACAAAGGGAGAGTGATGCACGTAGTGGTGAAAGATAAAACAGCTGAGTTGAAGACAGAGGCCACGGTGCAGCTGGACACACTCGCTTCCCGTTGCAAAAAGGAGAATGGCAAGCTTGAGAtctggGTGGAACTAAAGCCACAGGGTCGTCTGTTGATGGAAGCACGCTATTTCTTGGAAAAAAAGGaTGCAGGTCATGGTGAGGGAGATGTAGATGGAGACcctgagcgagagagagaggatgtgtTTGCGCTGCATCAACGACGTGGCGCGATCAAACAGGCCAAAGTGCATCTAGTGAAGTGTCATGAGTTCACggccacttttttcccccaacccACCTTCTGCTCTGTCTGCAAAGAGTTTGTCTGGGGTCTGAATAAACAGGGATATCAGTGCCGACAATGCAACGCTGCCATCCATAAGAAGTGCATTGACAAAGTGATTGCCAAATGTACAGGCTCGGCCATTAACAGCAAAGAAACAATGATCCATAAAGAGCGATTTAAGATCGACATGCCTCACCGGTTTAAAGTTTATAACTATAAGAGCCCGACCTTCTGTGAACATTGTGGCACACTACTTTGGGGTTTGGCACGTCAGGGCCTCAAATGTGAAGAATGTGGCATGAATGTTCATCACAAATGTCAAAAGAAAGTAGCAAATCTCTGTGGTGTCAACCAGAAGCTCATGGCCGAGGCTCTGGCTATGATTGAGAGCACGCAGCAGGCCCGGAGCTCCAGAGATAATGATATAATCGGACGTGAGGGACCGGTAGGTGTAGGACAGGCTGGAGTGGTCAGAGAGCCCTCGGGCTGTGTGCCATCGCTACCAATCCATACCTTATCCCCTACTCCAGCACCACCACTACCACGcaaagAGCAGCAGGGTGTAGCCTGGGATTCACCCTTAGAGGGCGACCATCTCAGTTTCGGTGAAGATTCAGAGCCACTGTATGCTGTCCCACACAAAGAGCACCACAAATTCTCCCTAGATGACTTTACCCTGCACAAGATGCTGGGAAAGGGCAGCTTTGGCAAGgTGTTTCTTGCCGAGCTGAAAACCACAGGGAAGTTCTTTGCAGTGAAGGCTCTAAAGAAAGATGTGGTTCTGATGGATGATGATGTGGAGTGCACTATGGTCGAGAGAAGTGTTCTATCTCTTGCCTGGGAACATCCCTTCCTCACACACCTTTACTGCACCTTTCAGACCAAGGAGAATCTGTTCTTTGTAATGGAGTATCTAAATGGAGGAGATTTAATGTTCCACATCCAGGCTTGCCACAGATTTGATCTCCCGCGCTCCACATTCTACGCTGCTGAAATCATCTGTGGTCTGcagtttctacatttaaaaggCATTGTGTACAGAGATCTGAAGTTGGATAATATTCTGCTAGACATCGATGGTCACATTAAGATTGCTGACTTTGGGATGTGTAAGGAGAACATGCTGGGAGGCCGAACATCCACCTTCTGTGGAACTCCAGATTACATTGCCCCTGAGATTTTGCTTGGGCAGAAATATGGCACCTCAGTGGACTGGTGGTCATTTGGAGTCCTTCTGTATgagatgctgattggtcagtcaCCGTTCCATGGGCATGACGAGGAGGAACTGTTCCAATCCATCCGCACAGATGACCCCTGTTACCCACGCTGGCTGACCAGAGATGCACGAGACATTCTCATCaagCTTTTTGTGCGGGAGCCGGAGCGGAGGCTGGGTGTGAAGGGAAATATTCGGCAACATCCTTTCTTCAGAGACACTGACTGGAATGCGCTGGAAAAGCGGCAAGTGGAGCCACCCTTCAGACCCACTGTGAAATCACCAAGTGACTGCAGTAACTTTGATAAGGAGTTCATTAACGAGAAGCCTCGGCTGTCCTGTGCTGATCGGACCCTCATCAACAGCGTGGACCAGACTATGTTCAAGAACTTTTCCTTTATTAACCCAGGGATGGCTCGCCTTAAGAACCCCtgaaacctgcacacacacacacacacacacacattacagcttCTTTACGCACACAGAAGATGCAATGAAGAAAATCAGTAAAGGAAGTACTATACTATAGTGCCAATATCTATACTGTGTTAAAAGAAGTCAGATGTGGAACATGTGGAATTTGGAATTAGTTTCAGTTGTAAGGAGTGTGCACTGATGTAAAAATCCAGCTGAGgatgtctatctgtgtgtgagagaggtttaattgttttttaattgcaGAGCCCATGTGATTAATTTCTGTTGTAGTTTGACAATAATTTGTtgtaaatgttgttttaattgGAGTTAATGAAGTATATTGGTGAAATCTTGTGACACATCAAGGTTGCAGTGTCCAAGGTATTTTAACAACCTGTAAAGAATATAGTCTACACATAAATGCCAAAATACAtgaatatatatagatatatgtatGGATGGATCTACTTAAAGgcatattatatgtattatttttattgcctAAAATGTTTGCCTGTGTAAGTTATAGAAATGGCAGTTATTactaatatttaacaaatatcTAGAGCTACTGCTAGGAATGTCTGTCTAAAGTAAAATTGTCTAGAAACAAAATAAGAAGCTAactattcagttcaattttatttatatactgctTTCAACAATagactttgtcacaaagcagctttacaaaaatctgaATGTAGATGTAGCTTTagttccctaatgagcaagccagtgacgacatgaggaagaaaccttgagaggaaccagacccaaaagggaacccatcctcttctgggtgacaccgaaTAGTGTCATTATGACTCATTAATTTTCCACAGTTGTATACTATAAACTCAAACAGTATTTAGTTTGTTGAAAGGTTGTTCATTATGAGCATCAGGGGTCTTTTATGATTACAACAGTTGTTGTTATGTATGagtctacagtatccaagtGAAGGTATCCACTAAAGAACAGGTGAGTGTTTTTGGTAAGTGCAATCATTAGGGTATCCACATGGGACTTTCCAAAGTAACTTTTAATGTATCCATTTGGggccatccacagcagcagcaagtgagtcacaagtgcaggaACCTctaagcagaagtagagcatcaggatttaccaggcaggtccagagggcagaaggagtcaggatctgGCAGGAGCACCCCATCAGACAACAGATGTAACATGTTTATttcaacagagaaaaagagagagaaaatagattATTATGTGCTTTTGTATTATAGTGGTTTAAAAGGGTGTTCTTTGTGATCAGAGAgtaagcagggactccagcaggAATAACTATGACAGTATAGCTAAAAGGTACAGAAAGTAACtctgagggcaccctgggacataaagtgtCCTGCCACTCAACCGTCACCAAACCTAAGCATGGGGGAACAACATCCTAACATCCAAGTGTACCATAGCTgtctatgcccatgaacccaCTAAATCTGCACCTTTACT

Function

GO: NA

KEGG:

id description
K18052 PRKCQ; novel protein kinase C theta type

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU334388 lncRNA downstream 45922 13573547 ~ 13575375 (-) False LOC117599591
XR_004579994.1 lncRNA downstream 47610 13571800 ~ 13573687 (-) True LOC117599591
TU334376 lncRNA downstream 57351 13559259 ~ 13563946 (-) True G282116
TU334298 lncRNA downstream 193425 13427657 ~ 13427872 (-) True G282060
TU334285 lncRNA downstream 211971 13407613 ~ 13409326 (-) True G282047
TU334559 lncRNA upstream 185051 13833248 ~ 13837431 (-) True G282279
TU334567 lncRNA upstream 190461 13838658 ~ 13840594 (-) True G282283
TU334636 lncRNA upstream 289459 13937656 ~ 13937879 (-) True G282349
TU334657 lncRNA upstream 305802 13953999 ~ 13969897 (-) False G282368
TU334658 lncRNA upstream 320326 13968523 ~ 13969897 (-) True G282368
XM_026923211.2 mRNA downstream 71794 13532919 ~ 13549503 (-) False LOC113532074
XM_026923212.2 mRNA downstream 71794 13532919 ~ 13549503 (-) False LOC113532074
XM_026923210.2 mRNA downstream 71794 13532919 ~ 13549503 (-) True LOC113532074
XM_026923213.2 mRNA downstream 72229 13532919 ~ 13549068 (-) False LOC113532074
XM_026923215.2 mRNA downstream 72230 13532919 ~ 13549067 (-) False LOC113532074
XM_026923135.2 mRNA upstream 17126 13665323 ~ 13724630 (-) False sfmbt2
XM_026923134.2 mRNA upstream 17126 13665323 ~ 13724630 (-) True sfmbt2
XM_034313246.1 mRNA upstream 17126 13665323 ~ 13724629 (-) False sfmbt2
XM_034313141.1 mRNA upstream 103326 13751523 ~ 13763790 (-) True LOC117599536
XM_026923772.2 mRNA upstream 134565 13782762 ~ 13787434 (-) True LOC113532385
XR_003403346.2 other downstream 1040234 12580923 ~ 12581063 (-) True LOC113532438
TU333129 other downstream 1960970 11657890 ~ 11660327 (-) True G281092
TU333108 other downstream 2033273 11586304 ~ 11588024 (-) True G281074
TU332827 other downstream 2361905 11238935 ~ 11259392 (-) True vegfab
XR_004579975.1 other downstream 2614154 10995105 ~ 11007143 (-) True si:ch211-51e12.7
TU335292 other upstream 1526151 15174348 ~ 15177613 (-) False LOC113531972
TU336422 other upstream 3310327 16958524 ~ 16964887 (-) True phf21b
trnar-ccg_5 other upstream 3455368 17103565 ~ 17103637 (-) True trnar-ccg_5
TU337036 other upstream 4330588 17978785 ~ 17980246 (-) False LOC113532261
TU337037 other upstream 4330588 17978785 ~ 17980246 (-) False LOC113532261

Expression Profile